mRNA_9656 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: A0A835YWB9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB9_9STRA) HSP 1 Score: 490 bits (1261), Expect = 2.380e-174 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1
Query: 1 MAEGVRRXXXXXXXXXXXXXXVNGFKHEQEAALLDEFSSGSEDDGPATLPQNHHLESGLRQAWSSSAKEWAAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLAALREDPVRCLVLAAVCMALAALLV 804
MAEGVRRXXXXXXXXXXXXXXVNGFKHEQEAALLDEFSSGSEDDGPATLPQNHHLESGLRQAWSSSAKEWAAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLAALREDPVRCLVLAAVCMALAALLV
Sbjct: 1 MAEGVRRXXXXXXXXXXXXXXVNGFKHEQEAALLDEFSSGSEDDGPATLPQNHHLESGLRQAWSSSAKEWAAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLAALREDPVRCLVLAAVCMALAALLV 268
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: D8LIG9_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG9_ECTSI) HSP 1 Score: 202 bits (515), Expect = 6.650e-57 Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 1
Query: 193 SSAKEWAAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLA 732
S ++W V+ + RN+ T VYA+SYT ++PVLPFMA R +Y + G G S GV EAWRG+ YG VMSGYY TKMI+AP IGFLSDR+GR+ LVVT LG ++F +T L G++S+HGL++CRLL+GCFAANGALM AYIRD+VP E Q+SAF+QHSA+WG AY+ A L+A
Sbjct: 119 SRKRDWFKVLLAARNLATCVYAVSYTTTMPVLPFMANRLIYPRGPDGAGDPG------SEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIA 292
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: A0A1H6EWG4_9ACTN (MFS transporter, DHA1 family, tetracycline resistance protein n=1 Tax=Nonomuraea solani TaxID=1144553 RepID=A0A1H6EWG4_9ACTN) HSP 1 Score: 81.3 bits (199), Expect = 6.280e-14 Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 235 NVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPL 726
+ V L +TL +P LPF A S G W +G +MS Y +++AAP++G LSDR GR+ L+++ GS V+ T T L SL GL++CR+L G + ++ AY+ D+VP E + A AQ AA G+A+VV L
Sbjct: 10 SATVFVDLLGFTLILPALPFYA---------------------SSLGATGLW----FGALMSAYSVAQLVAAPVLGRLSDRYGRRPLVLLALAGSVVSMTFTGL--ATSLAGLLVCRMLAGACGGSISVAQAYLADAVPAERRTGAMAQLGAAIGLAFVVGPAL 146
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: UPI00110C4F11 (MFS transporter n=1 Tax=Nonomuraea basaltis TaxID=2495887 RepID=UPI00110C4F11) HSP 1 Score: 80.9 bits (198), Expect = 8.100e-14 Identity = 58/164 (35.37%), Postives = 83/164 (50.61%), Query Frame = 1
Query: 235 NVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPL 726
+ V L +TL +P LPF Y EF G W +G +MS Y +++AAP++G LSDR GR+ L+++ GS ++ TLT L SL GL+ CR L G + ++ AY+ D+VP E + A AQ AA GMA+V+ L
Sbjct: 10 SATVFVDLLGFTLILPALPF--------YAAEF-------------GATGLW----FGALMSAYSVAQLVAAPVLGRLSDRYGRRPLVLLALAGSVLSMTLTGL--TTSLAGLLACRALAGACGGSISVAQAYLADAVPAERRTGAMAQMGAAIGMAFVIGPAL 146
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: UPI001568539D (MFS transporter n=1 Tax=Nonomuraea antri TaxID=2730852 RepID=UPI001568539D) HSP 1 Score: 75.9 bits (185), Expect = 4.260e-12 Identity = 57/162 (35.19%), Postives = 82/162 (50.62%), Query Frame = 1
Query: 241 VTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPL 726
V V L +TL +P LPF A G AW +G +MS Y +++AAP++G LSDR GR+ L+++T GS V+ LT L SL L++ RLL G + ++ AY+ D+VP E + A AQ AA G+A+V+ L
Sbjct: 12 VVFVDLLGFTLILPTLPFYAA---------------------GLGATGAW----FGALMSAYSVAQLLAAPVLGRLSDRYGRRPLVLLTLAGSAVSLALTGL--ADSLVLLLVTRLLAGACGGSISVAQAYLADAVPAERRTGAMAQMGAAIGLAFVLGPAL 146
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: UPI00166125B2 (MFS transporter n=1 Tax=Nonomuraea sp. SYSU D8015 TaxID=2593644 RepID=UPI00166125B2) HSP 1 Score: 75.5 bits (184), Expect = 5.990e-12 Identity = 60/172 (34.88%), Postives = 84/172 (48.84%), Query Frame = 1
Query: 211 AAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPL 726
A VV S V L L +TL +P LPF A G W +G +MS Y ++ AAP++G LSDR GR+ L+++ GS V+ LT L SL L++CRLL G + ++ AY+ D+VP E + A A+ AA GMA+V+ L
Sbjct: 5 AQVVVSATVFVDL---LGFTLILPALPFYAA---------------------GLGATGLW----FGALMSAYSVAQLAAAPVLGRLSDRYGRRPLVLLALAGSAVSMALTGL--AASLAWLLVCRLLAGACGGSISVAQAYLADAVPEERRTGAMARMGAAIGMAFVIGPAL 146
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: A0A1G8A8K1_9ACTN (Major Facilitator Superfamily protein n=1 Tax=Nonomuraea jiangxiensis TaxID=633440 RepID=A0A1G8A8K1_9ACTN) HSP 1 Score: 73.9 bits (180), Expect = 2.530e-11 Identity = 61/172 (35.47%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 211 AAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPL 726
A VV S V L L +T+ +P LPF A R +G DG +G VMS Y + APL+G LSDR GR+ L+++ GS V+ LT G + L+ CRLL G + ++ AY+ D+VP E + A AQ AA G+A+VV L
Sbjct: 5 AQVVISATVFVDL---LGFTVILPGLPFFAAR---------LGADGAA----------------FGLVMSAYSIAQFACAPLLGRLSDRYGRRPLVLLALAGSAVSLALTGAAGSPA--WLLACRLLAGACGGSISVAHAYVADTVPAERRTGAMAQLGAAIGVAFVVGPAL 146
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: A0A366LM25_9ACTN (MFS transporter n=1 Tax=Spongiactinospora rosea TaxID=2248750 RepID=A0A366LM25_9ACTN) HSP 1 Score: 73.6 bits (179), Expect = 2.810e-11 Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 394 GIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVV 714
G+ +G ++S Y + +AAP++G LSDR GR+ +L++ GS V+ LT + G SL L+ CR+L G + ++ AY+ D+VP + + A AQ AA GMA+++
Sbjct: 38 GVWFGALVSAYAVAQFVAAPVLGRLSDRYGRRSVLLMALAGSAVSMALTGMAG--SLGALLACRVLAGASGGSISVAQAYLADAVPADRRTQAMAQMGAAIGMAFMI 142
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: UPI0018A85CA5 (MFS transporter n=1 Tax=Nonomuraea cypriaca TaxID=1187855 RepID=UPI0018A85CA5) HSP 1 Score: 70.9 bits (172), Expect = 7.620e-11 Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 1
Query: 235 NVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPL 726
+ V L +TL +P LPF A G W G +MS Y +++AAP +G LSDR GR+ L+++ GS ++ LT L SL L+ CR+L G + ++ AY+ D+VP E + A AQ AA G+A+V+ L
Sbjct: 11 SATVFVDLLGFTLVLPALPFYAA---------------------DLGATGLWL----GALMSAYSVAQLVAAPALGRLSDRYGRRPLVLLALAGSVLSMALTGL--ATSLGWLLACRMLAGACGGSISVAHAYLADAVPAERRTGAMAQMGAAIGLAFVIGPAL 147
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Match: A0A1H2PPR8_9BURK (MFS transporter, DHA1 family, tetracycline resistance protein n=1 Tax=Chitinasiproducens palmae TaxID=1770053 RepID=A0A1H2PPR8_9BURK) HSP 1 Score: 72.4 bits (176), Expect = 7.950e-11 Identity = 61/178 (34.27%), Postives = 89/178 (50.00%), Query Frame = 1
Query: 256 ALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLAALREDPVRCLVLAAVCMAL 789
A+ L++P+LP + R+ VG DG +PG WR YG ++ Y + + +P +G LSDR GR+ +L+++ LG C ++ L L +L L+L R L G A GA+ AY+ D P +A F Q A G+ Y+ L AL E VR LAA +AL
Sbjct: 16 AMGVALTLPILPALLRQ---------VGHDG------APG----WR---YGGFLALYALMQFLLSPTLGALSDRHGRRPVLLLSLLGQCASYLLLALAPNFTL--LMLGRALAGATGATGAVAAAYLADVTPPAGRARRFGQLGACVGLGYIAGPALGGALGEHGVRLPFLAAAALAL 169 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350548 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9656 ID=mRNA_9656|Name=jgi.p|Trimin1|350548|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=805bp|location=Sequence derived from alignment at Contig_66:197887..199503- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCAGAAGGCGTCAGACGGCGTCGCAAGGAGCAGCAGGAGCAGCAGCAback to top protein sequence of jgi.p|Trimin1|350548 >Trimin1|350548|estExt_Genemark1.C_Ctg_660029 ID=Trimin1|350548|estExt_Genemark1.C_Ctg_660029|Name=jgi.p|Trimin1|350548|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp MAEGVRRRRKEQQEQQQQQQQVNGFKHEQEAALLDEFSSGSEDDGPATLPback to top mRNA from alignment at Contig_66:197887..199503- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9656 ID=mRNA_9656|Name=jgi.p|Trimin1|350548|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1617bp|location=Sequence derived from alignment at Contig_66:197887..199503- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_66:197887..199503- >mRNA_9656 ID=mRNA_9656|Name=jgi.p|Trimin1|350548|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_66:197887..199503- (Tribonema minus UTEX_B_3156 )back to top |