Trimin1|352218|estExt_Genemark1.C_Ctg_1120037 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352218
Unique Name	Trimin1\|352218\|estExt_Genemark1.C_Ctg_1120037
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	265

Homology

[Close]

BLAST of jgi.p|Trimin1|352218 vs. uniprot
Match: A0A835ZJ42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ42_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.780e-16
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0

Query:    1 MVYTRTLATVAAALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRTFSKAGRYFDNVVTDLTDRAQHAKENVQDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKVKHAAVDIKDAVGDGINNVKDAVKDVFRD 264
            MVYTRTLATVAAALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRTFSKAGRYFDNVVTDLTDRAQHAKENVQDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKVKHAAVDIKDAVGDGINNVKDAVKDVFRD
Sbjct:    1 MVYTRTLATVAAALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRTFSKAGRYFDNVVTDLTDRAQHAKENVQDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKVKHAAVDIKDAVGDGINNVKDAVKDVFRD 264

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352218 vs. uniprot

BLAST of jgi.p|Trimin1|352218 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZJ42_9STRA	1.780e-16	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 164..184
None	No IPR available	COILS	Coil	Coil	coord: 128..148
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 78..183 e-value: 6.6E-7 score: 31.3 coord: 184..264 e-value: 4.1E-5 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..235
None	No IPR available	PANTHER	PTHR47372:SF11	DAUER UP-REGULATED-RELATED	coord: 39..261
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 39..261

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:307211..310716 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352218	mRNA_15527	Tribonema minus UTEX_B_3156	mRNA	Contig_112 306930..310716 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352218|estExt_Genemark1.C_Ctg_1120037 ID=Trimin1|352218|estExt_Genemark1.C_Ctg_1120037|Name=jgi.p|Trimin1|352218|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
MVYTRTLATVAAALALISASSGFVIAGSRAGLTTSRPASTLRMSSDVERD
VKRTARDASETASDLGNQAEGAARDAGDSANRTFSKAGRYFDNVVTDLTD
RAQHAKENVQDAVNHGTNDARDYARKAKASAEDIAHRAEDQYNNITGEAK
DRINDLSRSTRNAADSAQQRAAEFGDKAKSYEKKSEASAREVSERARREA
DGIASEASDRANELARNSKKGAEEAQRKAEGFGGKVKHAAVDIKDAVGDG
INNVKDAVKDVFRD*