mRNA_9640 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169653
Unique NamemRNA_9640
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA)

HSP 1 Score: 456 bits (1174), Expect = 1.400e-160
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
Query:    1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGPPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRTGVCPCAMWCCRALLGARCVARVCSQPHLVTWSSTIF 849
            RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGPPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRTGVCPCAMWCCRALLGARCVARVCSQPHLVTWSSTIF
Sbjct:    1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGPPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRTGVCPCAMWCCRALLGARCVARVCSQPHLVTWSSTIF 283          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI)

HSP 1 Score: 232 bits (591), Expect = 1.470e-69
Identity = 124/210 (59.05%), Postives = 149/210 (70.95%), Query Frame = 1
Query:    1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAA-----------PVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESAL 597
            RK+KILMLGDTGVGKSSL+ RFT+D F  G+VGTVGVDFK+RT+++ GE++ VQVWDTAGQERFHKITRAYY G  GILLAYDVGEP TLENISYWI NI+DNAS  V TCLVGNK DL+    +                     L+ CVSASP+ +            V T+SG+ IA++YGV FFE SAKTG+NV+ AF+SL+E  +
Sbjct:  254 RKIKILMLGDTGVGKSSLIQRFTDDTFHAGMVGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNASKDVRTCLVGNKADLKVRAISPYQ------------------LNWCVSASPQGSGRKRSWECPPVQVETESGQQIAEEYGVNFFEASAKTGYNVNEAFLSLLEGVV 445          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.030e-47
Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 1
Query:    1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 603
            RK+K+LMLGD+GVGKSSLM+RF ED F    V T+GVDFK++T+ L  E V +QVWDTAGQ++FHKIT+AYYRGSHGI+L YD+ +P TL+N +YW+ +I+D A S  V  CLVGNK+DLR E                                  A  V T +GR +A+++G  +FE SAKTG  V  AF++    A EA
Sbjct:   52 RKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKVDLREEVGLEGQQQDL------------------------AGMVETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEA 229          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.390e-46
Identity = 96/202 (47.52%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 603
            RK+K+LMLGD+GVGKSSLM+RF ED F    V T+GVDFK++T+ L  E V +QVWDTAGQ++FHKIT+AYYRGSHGI+L YD+ +P TL+N +YW+ +I+D A S  V  CL+GNK+DLR E                                     V T +GR +A+++G  +FE SAKTG  V  AF++    A EA
Sbjct:  942 RKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKVDLREEVGREEQQQDLSGM------------------------VETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEA 1119          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A836C8W2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.160e-46
Identity = 87/205 (42.44%), Postives = 120/205 (58.54%), Query Frame = 1
Query:    7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASS----GVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAAD 609
            ++IL+LGD+GVGK+SLM R+TED F P L+ T GVDFK+R LD+ G RV  Q+WDTAGQE+FH ITRAYYRG+HGI L YDV +  + +N++YW+ NIQ +A +    G+C  L+GNK+DL  E                                     V + +G  + +++GV +FE SAK G  V  AF +L    +E  +
Sbjct:    3 IRILLLGDSGVGKTSLMLRYTEDHFSPNLLSTAGVDFKVRHLDINGRRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVADADSFKNVNYWVANIQTHAPAAGREGICKVLLGNKVDLPAEHRE----------------------------------VSSAAGNEVGEEFGVRYFEVSAKDGTGVQDAFDTLAREIVEGLE 173          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A6P6SVL0_COFAR (ras-related protein RABE1a-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6SVL0_COFAR)

HSP 1 Score: 162 bits (411), Expect = 7.640e-46
Identity = 87/192 (45.31%), Postives = 116/192 (60.42%), Query Frame = 1
Query:    7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSL 582
            VK+L++GD+GVGKS ++ RF ED F    + T+G+D K+RT++L G+R+ +Q+WDTAGQERF  IT AYYRG+ GILL YDV + ++  NI  WI NI+ +AS  V T LVGNK D+                                  S +A P  T  G+A+A +YGV FFETSAKT HNV+  F S+
Sbjct:   16 VKLLLIGDSGVGKSCILLRFCEDSFTTSFISTIGIDLKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNTILVGNKADM--------------------------------DESKRAVP--TSRGQALANEYGVKFFETSAKTNHNVNEVFFSI 173          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A482RSH1_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSH1_9ARCH)

HSP 1 Score: 165 bits (417), Expect = 8.880e-46
Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 603
            R+VKIL+LGD+GVGKSSL+ R+T D F P L  TVGV+FK + +  +GE + VQVWDTAGQE+FHKIT +YY+G+ GI+L YDV +  +L N+ YWI NI+ +AS  V   LVGNK+DLR                                A P    +  + G+ I+ ++GV FFETSAK   NV  AF++LV    +A
Sbjct:   51 RRVKILLLGDSGVGKSSLIVRWTHDTFSPSLASTVGVNFKNKKIAYKGECLQVQVWDTAGQEQFHKITTSYYKGAQGIMLVYDVADANSLANVEYWIKNIKTHASDSVHVVLVGNKIDLR-------------------------------HADPDKKYIDMNRGKEISHKFGVPFFETSAKDSSNVEHAFMTLVGDIADA 220          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: C1E6E1_MICCC (Ras-related gtp-binding protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6E1_MICCC)

HSP 1 Score: 162 bits (409), Expect = 9.750e-46
Identity = 84/208 (40.38%), Postives = 124/208 (59.62%), Query Frame = 1
Query:    7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSL---VESALEAADAGCG 621
            +K+L++GD+GVGKS L+ RF+ED+F    + T+G+DFK+RT++L G+RV +Q+WDTAGQERF  IT AYYRG+HGILL YDV +  +  N+  W+ NI+ +AS GV   LVGNK D   +                                     + T+ G A+A+++G+ FFETSAK   NV+ AF ++   +++ L+ +  G G
Sbjct:   12 IKLLLIGDSGVGKSCLLLRFSEDQFTSSFITTIGIDFKIRTVELDGKRVKLQIWDTAGQERFRTITNAYYRGAHGILLTYDVTDEGSFNNVRNWMRNIEQHASDGVSKVLVGNKSDAEEKRV-----------------------------------ISTEQGEALAKEFGIPFFETSAKANTNVNDAFFAIARIIKAGLKTSGDGGG 184          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: UPI0009017E4D (ras-related protein RABE1c-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009017E4D)

HSP 1 Score: 161 bits (407), Expect = 2.540e-45
Identity = 89/211 (42.18%), Postives = 125/211 (59.24%), Query Frame = 1
Query:    7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSL---VESALEAADAGCGPPT 630
            +K+L++GD+GVGKS L+ RF+ED F    + T+G+DFK+RT++L G+R+ +Q+WDTAGQERF  IT AYYRG+ GILL YDV + ++ +NI  W+ NI+ +AS  V   L+GNK D+                                  S K  P  T  G+A+A +YGV FFETSAKTG+NV   F ++   ++  L  AD+   P T
Sbjct:   11 IKLLLIGDSGVGKSCLLLRFSEDSFTQSYITTIGIDFKVRTIELDGKRMKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFDNIRNWMKNIEQHASDTVNKILIGNKADM--------------------------------DESKKVVP--TSRGQALADEYGVKFFETSAKTGYNVEQGFFAIAGDIKQRLAEADSKAEPST 187          
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A1E3QB79_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3QB79_LIPST)

HSP 1 Score: 160 bits (406), Expect = 2.750e-45
Identity = 85/206 (41.26%), Postives = 116/206 (56.31%), Query Frame = 1
Query:    7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGP 624
            +K+L++GD+GVGKS L+ RF+ED F P  + T+G+DFK+RT+DL G+R+ +Q+WDTAGQERF  IT AYYRG+ GILL YDV +  +  NI  W +N++ +AS GV   L+GNK D   + A                                   V T+ G+A+A + G+ F E SAK   NV  AFVSL     +  D    P
Sbjct:   11 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIDLDGKRIKMQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIRNWFSNVEQHASEGVNKLLIGNKCDWEEKRA-----------------------------------VSTEQGKALANELGIPFIEASAKANINVEEAFVSLARQIKQRVDLASEP 181          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLY5_9STRA1.400e-160100.00P-loop containing nucleoside triphosphate hydrolas... [more]
H6WB87_VAULI1.470e-6959.05Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID... [more]
D8LMQ2_ECTSI1.030e-4748.51Rab8E, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KJK4_9PHAE1.390e-4647.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8W2_9STRA3.160e-4642.44Ras family-domain-containing protein n=1 Tax=Tribo... [more]
A0A6P6SVL0_COFAR7.640e-4645.31ras-related protein RABE1a-like n=3 Tax=Coffea Tax... [more]
A0A482RSH1_9ARCH8.880e-4645.27GTP-binding protein n=1 Tax=archaeon TaxID=1906665... [more]
C1E6E1_MICCC9.750e-4640.38Ras-related gtp-binding protein n=1 Tax=Micromonas... [more]
UPI0009017E4D2.540e-4542.18ras-related protein RABE1c-like n=2 Tax=Ipomoea Ta... [more]
A0A1E3QB79_LIPST2.750e-4541.26Uncharacterized protein n=1 Tax=Lipomyces starkeyi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:72536..74829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169653|e_gw1.66.25.1
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
KEGG koko:K07901,ko:K07903,ko:K07976
DescriptionGTPase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0078@1|root,KOG0078@2759|Eukaryota
Evalue1.69e-48
Seed ortholog2880.D8LMQ2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall GTPase superfamily, Ras type
Ec32 orthologEc-00_005220.1
TranscriptId169975
TrackFilteredModels1
ProteinId169653
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169653gene_9640Tribonema minus UTEX_B_3156 geneContig_66 72536..74829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169653Trimin1|169653|e_gw1.66.25.1Tribonema minus UTEX_B_3156 polypeptideContig_66 72536..74829 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9640_3exon_9640_3Tribonema minus UTEX_B_3156 exonContig_66 72536..73084 -
exon_9640_2exon_9640_2Tribonema minus UTEX_B_3156 exonContig_66 73742..73882 -
exon_9640_1exon_9640_1Tribonema minus UTEX_B_3156 exonContig_66 74668..74829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9640CDS_9640Tribonema minus UTEX_B_3156 CDSContig_66 74668..74829 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_66:72536..74829- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAAGGTCAAGATCCTCATGCTGGGCGACACGGGCGTGGGCAAGAGCTC
GCTCATGAACCGCTTCACAGAGGACGAGTTCTTCCCCGGGCTCGTGGGGA
CGGTCGGCGTCGACTTCAAGATGCGCACGCTGGACCTGCGCGGCGAGCGC
GTCCTGGTGCAGGTCTGGGACACGGCGGGGCAGGAGCGCTTCCACAAGAT
CACGCGCGCGTACTACAGGGGCTCGCACGGCATACTGCTCGCGTACGACG
TCGGCGAACCCGCGACGCTCGAGAATATCTCCTACTGGATAAATAACATC
CAGGATAATGCATCGAGCGGCGTGTGCACGTGCCTCGTTGGCAACAAGAT
GGACCTGCGCGGCGAGACCGCTGCCGCCGCCGCGTCCGACAACTCCGCCG
ATGCCGCTGCCGCGCCGCCGCCGCCAGCCGCCAACCCGCTCTCCTGCTGC
GTCTCCGCGAGCCCCAAGGCGGCGCCCGTGGGCACGGACAGCGGGCGCGC
CATCGCTCAGCAGTACGGCGTCGCCTTCTTCGAGACGAGCGCCAAGACGG
GGCACAATGTGCACGCCGCGTTCGTGAGCCTCGTGGAGAGCGCGCTCGAG
GCGGCGGACGCGGGCTGCGGCCCGCCGACGACGCCCGCGTCGCAGCAGCG
GCGGCGCGGCGCGCGGCGCGGCGGCAGCGGCGGCGCCGGCGCCGGCGGCG
ACCGCGCGCACTCCACGCCGCCGCCGTCGTCGCTGCGCACAGGTGTGTGT
CCCTGCGCCATGTGGTGCTGCCGCGCTCTTCTCGGCGCACGCTGTGTGGC
ACGCGTCTGCAGCCAACCACACCTTGTCACCTGGAGCTCTACGATCTTTT
GA
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protein sequence of jgi.p|Trimin1|169653

>Trimin1|169653|e_gw1.66.25.1 ID=Trimin1|169653|e_gw1.66.25.1|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp
RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGER
VLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNI
QDNASSGVCTCLVGNKMDLRGETAAAAASDNSADAAAAPPPPAANPLSCC
VSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALE
AADAGCGPPTTPASQQRRRGARRGGSGGAGAGGDRAHSTPPPSSLRTGVC
PCAMWCCRALLGARCVARVCSQPHLVTWSSTIF*
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mRNA from alignment at Contig_66:72536..74829-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2294bp|location=Sequence derived from alignment at Contig_66:72536..74829- (Tribonema minus UTEX_B_3156 )
CGCAAGGTCAAGATCCTCATGCTGGGCGACACGGGCGTGGGCAAGAGCTC GCTCATGAACCGCTTCACAGAGGACGAGTTCTTCCCCGGGCTCGTGGGGA CGGTCGGCGTCGACTTCAAGATGCGCACGCTGGACCTGCGCGGCGAGCGC GTCCTGGTGCAGGTATGCGTTTCTGCGATAGTGTTTCTGCGAGAGTGGCG CTTACACTCAGCATGCTAGTACTCAGCGTCGCCGCCGCCGCCTCGTATAT GCGGCGTACTTCGCAAACAACAACGCTTACACTGAGCATGCTGGCACTCA GCGCTGGGACGAGGTTTGAGGTGATGCTCGGCGTCTGGTGCGGAGCGGTG TGGACTCCAAGATGCGCGCGCTGGACCCGCACGTCTGAGGCGGGATGCTG GGGTTGATGTCCTAACCCTAACCCTAACCCTACCCCGACGAAGTCGCAGC ACAGAGCGAGGGCGCGTGCACGTCTCACAGCGGTCCGTCCGCATGTGAAG GCGGACTTGAAGTTGTTGACGGCGGGCGCTGGCGCCAAGCGGTGGCCTGC TGCTCATGCGCAATTGCGCTGTCATCTACACGTTCGCCGACTCCTCTACT TCCCAAGTGCTTGCCTGCACCCACAAACACGCATGCGTGCAGCCGCTTGT CCAGCAGCGCGCGTCTGCATTCACCGGCCCCTCGCGGGCCAGGGCACCGG GGTTCAGCCTTCGCCTCGGCGCCGCTGCTGCAGTCTGAAGCACGCACGCA GCTACACCCCCGCGCGCCTGTTTGAGCCGCCGCTCCTATGCGATGAACGC GCGACTGAACGCACCCTGAGCACTGTTGCTGAGCGCTGCTGTCGCCGCCG CTGCGCTGCTGCTGCTGCCGCCGGCCTGCGGCGCGCACCCCTGAGCACCT ATTTCTGAGCCCTGCTGCCGCTGTCGCCCCCCCCCCCCCCCCCGCAGGTC TGGGACACGGCGGGGCAGGAGCGCTTCCACAAGATCACGCGCGCGTACTA CAGGGGCTCGCACGGCATACTGCTCGCGTACGACGTCGGCGAACCCGCGA CGCTCGAGAATATCTCCTACTGGATAAATAACATCCAGGTGAGACATGTT CATGTGTACATGTATGTACACTGAAGTATACATCTTTCATGCGTGCGTTG CACTGTCGGCGTACAACGACGGCGAGCCCGCGACGATCGAGAACATCTCC TGCTGGATCAACAACATCAAAATATTTGGTGCTTTGCACATGATGTGAGG TGTTTAGATGCGTGTGTGCGCTGTGCTGCCACCGAGTCTGCAGCACTCGA CAACATGTCCTACCGACTAGACGACATCCAGGCAGAGTGCGCGTGCTGAA TGCATACATTCACACTAGAGGTATACATTACAGAGTGCGCAGCACTGGAA AGCGTCTCCCGCTGCACGTGTAGAATCCAGGTGAGCAGCGCTCAAAGCCC AGTGTCGAACCACGGCTATTCCGCACGACAAGTGCGAATCTGCCGCGTTT GAGACCACCTGCCGCTCGACGCACGGCACTCACAGCGCAGCATGCATCAA GAGTACCGCTGCGGTCACGTCAGTTGCGCTGGCCGGCGCAAGCGCGACAC CGCCTCCCCGTCCACGACAACGCGCCGCGCACGCCGCCCCTGCCCCGGTG ACGCACGCGCCTGCACCCGCTGATGGCCACTCATGGCCCCCTCCCCGGCT GCCCCCCCCCCCCCCCCCCCCCGCCCCCTCCTTTTCACTGCGCAGGATAA TGCATCGAGCGGCGTGTGCACGTGCCTCGTTGGCAACAAGATGGACCTGC GCGGCGAGACCGCTGCCGCCGCCGCGTCCGACAACTCCGCCGATGCCGCT GCCGCGCCGCCGCCGCCAGCCGCCAACCCGCTCTCCTGCTGCGTCTCCGC GAGCCCCAAGGCGGCGCCCGTGGGCACGGACAGCGGGCGCGCCATCGCTC AGCAGTACGGCGTCGCCTTCTTCGAGACGAGCGCCAAGACGGGGCACAAT GTGCACGCCGCGTTCGTGAGCCTCGTGGAGAGCGCGCTCGAGGCGGCGGA CGCGGGCTGCGGCCCGCCGACGACGCCCGCGTCGCAGCAGCGGCGGCGCG GCGCGCGGCGCGGCGGCAGCGGCGGCGCCGGCGCCGGCGGCGACCGCGCG CACTCCACGCCGCCGCCGTCGTCGCTGCGCACAGGTGTGTGTCCCTGCGC CATGTGGTGCTGCCGCGCTCTTCTCGGCGCACGCTGTGTGGCACGCGTCT GCAGCCAACCACACCTTGTCACCTGGAGCTCTACGATCTTTTGA
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Coding sequence (CDS) from alignment at Contig_66:72536..74829-

>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_66:72536..74829- (Tribonema minus UTEX_B_3156 )
CGCAAGGTCAAGATCCTCATGCTGGGCGACACGGGCGTGGGCAAGAGCTC
GCTCATGAACCGCTTCACAGAGGACGAGTTCTTCCCCGGGCTCGTGGGGA
CGGTCGGCGTCGACTTCAAGATGCGCACGCTGGACCTGCGCGGCGAGCGC
GTCCTGGTGCAGGTCTGGGACACGGCGGGGCAGGAGCGCTTCCACAAGAT
CACGCGCGCGTACTACAGGGGCTCGCACGGCATACTGCTCGCGTACGACG
TCGGCGAACCCGCGACGCTCGAGAATATCTCCTACTGGATAAATAACATC
CAGGATAATGCATCGAGCGGCGTGTGCACGTGCCTCGTTGGCAACAAGAT
GGACCTGCGCGGCGAGACCGCTGCCGCCGCCGCGTCCGACAACTCCGCCG
ATGCCGCTGCCGCGCCGCCGCCGCCAGCCGCCAACCCGCTCTCCTGCTGC
GTCTCCGCGAGCCCCAAGGCGGCGCCCGTGGGCACGGACAGCGGGCGCGC
CATCGCTCAGCAGTACGGCGTCGCCTTCTTCGAGACGAGCGCCAAGACGG
GGCACAATGTGCACGCCGCGTTCGTGAGCCTCGTGGAGAGCGCGCTCGAG
GCGGCGGACGCGGGCTGCGGCCCGCCGACGACGCCCGCGTCGCAGCAGCG
GCGGCGCGGCGCGCGGCGCGGCGGCAGCGGCGGCGCCGGCGCCGGCGGCG
ACCGCGCGCACTCCACGCCGCCGCCGTCGTCGCTGCGCACAGGTGTGTGT
CCCTGCGCCATGTGGTGCTGCCGCGCTCTTCTCGGCGCACGCTGTGTGGC
ACGCGTCTGCAGCCAACCACACCTTGTCACCTGGAGCTCTACGATCTTTT
GA
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