mRNA_9692 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136365
Unique NamemRNA_9692
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136365 vs. uniprot
Match: A0A836C9R5_9STRA (UBA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R5_9STRA)

HSP 1 Score: 426 bits (1096), Expect = 9.870e-151
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 
Query:    1 PCVDVWDQQSLVYTTAHPGADEVLWNADEGFFFHKINRALCGDFVIVVRFGXXXXXXXXAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSARYADGFDGGFCMTAVFDTVDGSAIQDDQYFSDALEPLLRGAAAARQGLLDIASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLIEEGLGAKLSTKTQFSPMSGSDVSVSPVS 666
            PCVDVWDQQSLVYTTAHPGADEVLWNADEGFFFHKINRALCGDFVIVVRFGXXXXXXXXAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSARYADGFDGGFCMTAVFDTVDGSAIQDDQYFSDALEPLLRGAAAARQGLLDIASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLIEEGLGAKLSTKTQFSPMSGSDVSVSPVS
Sbjct:    1 PCVDVWDQQSLVYTTAHPGADEVLWNADEGFFFHKINRALCGDFVIVVRFGXXXXXXXXAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSARYADGFDGGFCMTAVFDTVDGSAIQDDQYFSDALEPLLRGAAAARQGLLDIASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLIEEGLGAKLSTKTQFSPMSGSDVSVSPVS 222
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BLAST of jgi.p|Trimin1|136365 vs. uniprot
Match: A0A1V9YVV8_9STRA (Formin-homology 2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVV8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.270e-6
Identity = 52/206 (25.24%), Postives = 84/206 (40.78%), Query Frame = 1 
Query:    1 PCVDVWDQQSLVYTTAHPGADE------VLWNADEGFF--FHKINRALCGDFVIVVRFGXXXXXXXXAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSARYADGF-DGGFCMTAVF---DTVDGSAIQDDQYFSDALEPLLRGAAAARQGLLDIASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLI 582
            P + +WD   +++TT  P          V WN ++GF          L G F I+  FG                 +RVL RY +   F+ PG+ + L    +D+  +Y  GF D  F +  VF   +T     +  D            G  A +QG+++IAS HV+  +       +  G+   A+T  LQ + N    A+ ++
Sbjct:  243 PLIQIWDDWRMIFTTGKPAISSTYSSPVVDWNPEDGFLAILWDTGIPLDGGFSILCSFGDDYTENEDDPA------SRVLFRYMDSTWFLTPGL-VTLKKSNLDMMKQYEHGFEDENFSVDMVFHNSNTPQRCYVPVDY----------TGNYAVKQGIVEIASHHVVAPDPSMYLNFVKNGFDTTASTFALQRSQNAPNLALDIL 431
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BLAST of jgi.p|Trimin1|136365 vs. uniprot
Match: A0A1V9ZJH8_9STRA (Formin-homology 2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJH8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-6
Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1 
Query:    1 PCVDVWDQQSLVYTTAHPGADEVL----WNADEGFF--FHKINRALCGDFVIVVRFGXXXXXXXXAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSARYADGF-DGGFCMTAVFDTVDGSAIQDDQYFSDALEPL-LRGAAAARQGLLDIASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLIEEGLGAKLSTKTQFSPMSGSDVSVSPV 663
            P V +WD   LV++ A   A + +    WN ++GF          L G F I+  FG        +    P S  RVL RY +   F+ PG+ + L    +D+  +Y  GF D  F +  VF +   S +    Y      P+   G  A +QG+++IAS HV+  +       +  G+   A+T  LQ   N    A+ ++       + ++   SP+ G D ++ PV
Sbjct:  228 PLVQIWDDWRLVFSNAKDAAHDAVPVIDWNPEDGFLAILWDTGIPLDGGFSILCSFGDDYGD---SEDNDPAS--RVLFRYMDSTWFLSPGL-VTLKKATLDMMKQYEHGFEDDNFSVDMVFHS---SVMPARGYV-----PVDYTGNYAVKQGVVEIASHHVVAPDPSIYLNFVKNGFDATASTFALQRASNAPNLALDILHSDGLTTIFSRLPPSPV-GKDDTLQPV 441
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BLAST of jgi.p|Trimin1|136365 vs. uniprot
Match: A0A6G0WC67_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC67_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.290e-6
Identity = 54/208 (25.96%), Postives = 92/208 (44.23%), Query Frame = 1 
Query:    1 PCVDVWDQQSLVYTTA---HPGADEVL--WNADEGFF--FHKINRALCGDFVIVVRFGXXXXXXXXAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSARYADGF-DGGFCMTAVFDTVDGSAIQDDQYFSDALEPL-LRGAAAARQGLLDIASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLIE-EGL 594
            P V +WD   +V++TA   +P +   +  WN  +GF     +    L G F I+  FG          G P    +RVL R+ +   F   G+     LD +D+   Y  GF D  F    +F         + +    +  P+   G  A +QG+++IAS H+++ +       +  G+ P+A+T  LQ + N    A+ ++  EG+
Sbjct:  234 PLVQIWDDTQMVFSTASDENPNSQRPVIDWNPQDGFLAILWETGILLDGGFSILCSFGDDYDDHQ---GDP---SSRVLFRHMDSTWFHSEGLVTLKKLD-LDMMKEYEHGFEDEHFSADIIF--------HESKTTPKSYVPVDFTGNYAVKQGIIEIASHHIVSPDPTMYSNFVKNGFDPDASTFALQRSQNAPNVALDILHSEGI 426
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136365 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836C9R5_9STRA9.870e-151100.00UBA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A1V9YVV8_9STRA1.270e-625.24Formin-homology 2 domain-containing protein n=1 Ta... [more]
A0A1V9ZJH8_9STRA1.700e-627.07Formin-homology 2 domain-containing protein n=1 Ta... [more]
A0A6G0WC67_9STRA2.290e-625.96Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:495619..498891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136365|gw1.66.80.1
BRITEko00000,ko01009
KEGG koko:K18080
Descriptionphosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2453@1|root,KOG2283@2759|Eukaryota
Evalue8.63e-26
Seed ortholog2880.D8LT96
Hectar predicted targeting categoryother localisation
TranscriptId136687
TrackFilteredModels1
ProteinId136365
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136365gene_9692Tribonema minus UTEX_B_3156 geneContig_66 495619..498891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9692_1exon_9692_1Tribonema minus UTEX_B_3156 exonContig_66 495619..495723 +
exon_9692_2exon_9692_2Tribonema minus UTEX_B_3156 exonContig_66 496457..496732 +
exon_9692_3exon_9692_3Tribonema minus UTEX_B_3156 exonContig_66 497993..498196 +
exon_9692_4exon_9692_4Tribonema minus UTEX_B_3156 exonContig_66 498811..498891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9692CDS_9692Tribonema minus UTEX_B_3156 CDSContig_66 495619..495723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136365Trimin1|136365|gw1.66.80.1Tribonema minus UTEX_B_3156 polypeptideContig_66 495619..498891 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9692 ID=mRNA_9692|Name=jgi.p|Trimin1|136365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_66:495619..498891+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGTGCGTGGACGTGTGGGACCAGCAGTCGCTCGTCTACACGACGGCGCA
CCCGGGCGCGGACGAGGTGCTGTGGAACGCCGACGAGGGCTTCTTCTTCC
ACAAGATCAACCGCGCGCTCTGCGGCGACTTTGTCATCGTCGTGCGCTTT
GGCGGCGGCGACGACGACGATAATGCGGCGGCGGGCCTGCCGCCGTACAG
CGACACGCGCGTGCTGCTGCGCTACGCCAACTGCGCGGGCTTCGTGCTGC
CGGGCGTGCCGCTGCGCCTGTCACTCGACGAGATCGACGTCAGCGCGCGC
TACGCGGACGGCTTCGACGGCGGCTTCTGCATGACGGCCGTCTTCGACAC
GGTCGACGGCAGCGCGATACAGGACGACCAGTACTTTAGCGACGCGCTGG
AGCCGCTGCTGCGCGGCGCCGCCGCGGCGCGGCAGGGCCTCCTGGACATT
GCCTCCTTCCACGTCCTCACCGCCAACATGCGCCGGCTCGACAAGCTGCT
GGCGATGGGATACCCGCCCGAGGCCGCGACGCTGGGACTGCAGCTCACCG
GCAACGACTCCGCGCGCGCGGTGCAGCTCATCGAGGAGGGCCTGGGGGCG
AAGCTCAGCACCAAGACCCAGTTCTCCCCCATGTCTGGCTCGGACGTCTC
CGTCTCGCCTGTGAGT
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protein sequence of jgi.p|Trimin1|136365

>Trimin1|136365|gw1.66.80.1 ID=Trimin1|136365|gw1.66.80.1|Name=jgi.p|Trimin1|136365|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
PCVDVWDQQSLVYTTAHPGADEVLWNADEGFFFHKINRALCGDFVIVVRF
GGGDDDDNAAAGLPPYSDTRVLLRYANCAGFVLPGVPLRLSLDEIDVSAR
YADGFDGGFCMTAVFDTVDGSAIQDDQYFSDALEPLLRGAAAARQGLLDI
ASFHVLTANMRRLDKLLAMGYPPEAATLGLQLTGNDSARAVQLIEEGLGA
KLSTKTQFSPMSGSDVSVSPVS
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mRNA from alignment at Contig_66:495619..498891+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9692 ID=mRNA_9692|Name=jgi.p|Trimin1|136365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3273bp|location=Sequence derived from alignment at Contig_66:495619..498891+ (Tribonema minus UTEX_B_3156 )
CCGTGCGTGGACGTGTGGGACCAGCAGTCGCTCGTCTACACGACGGCGCA
CCCGGGCGCGGACGAGGTGCTGTGGAACGCCGACGAGGGCTTCTTCTTCC
ACAAGGTATGTGGGTGTATAGTTCTAACACTGAGGCAGCTGCTTCTCCCG
CGAGGCGCGCGCGCGGCAAGGGGTGCCTAGGAGTGAGGGCTGCGGCGGAG
GCGCGATCGGATGAGACGCACGCGGGGCGGATTTGTATAGAAGTACATTT
CAAATACATGACTGTCTCAATGTGTTTACGAAGCGTGTAGTGAGGGTTGG
ACGCGAAATCAGACGGTGTGGAACTAGTATTGTGGGGCGCGAGCGTCGGC
TTCCTCTTTAGAATGGTGCGTGGGGGGGATTACGTGGGCTCGTCGTCAGA
TGGTGTGCACGCAGGCACTTCGGAACGCGATCGGCGGTGTTTGGTTTCAC
TCAAGGCGCCGGGGCACAATTGGATTGCCATAGCTGAGGCGCCATCACAT
GTGATACATGGGGGTAGGCTTGTATATGTTCGTTCAGGGGCTTGCGCCAG
TGTGGCAGGCACGCTGGGAAGTCACAGTTCACAGCCACGTGACTCGACAC
CACATTCGCCTGTCCTCTGCGTGAATGACAGCCCCAGTGTTTTCGGCGCA
CACACATGTGGAACTGAAATCGCGTTCGGACTGCGCGCGTGGGGGTCCTT
TTACGAGGTGCGCACGCGGGGCTTGCGGTGACCGTGAGGTGGCACGGCTC
GGCGGCTGCAGACTGGCTGCTACACATGTGCGGCCTCAACATACCAATGT
ACCCCCCCACACACACACGCCCCCCGCCGCGCGAGCAGATCAACCGCGCG
CTCTGCGGCGACTTTGTCATCGTCGTGCGCTTTGGCGGCGGCGACGACGA
CGATAATGCGGCGGCGGGCCTGCCGCCGTACAGCGACACGCGCGTGCTGC
TGCGCTACGCCAACTGCGCGGGCTTCGTGCTGCCGGGCGTGCCGCTGCGC
CTGTCACTCGACGAGATCGACGTCAGCGCGCGCTACGCGGACGGCTTCGA
CGGCGGCTTCTGCATGACGGCCGTCTTCGACACGGTCGACGGCAGCGCGA
TACAGGACGACCAGGTGCGCTGCGCGCGCGGCGCCCTCCCCCCGTGCTGA
GCACTGCAATGCTTGAAGTTGGTGTCTCATTTCCTTCTCAAGGTGAAGTC
GGGGTCAGTCCCTGCCAGCATAGCAGCAGCGGCGGCGACGGCAGCGCGAT
ACAGGACGACCAGGTGCGTGGCTCCCGCGCTGAAGAAGCGGGTGAAGCAT
TGGTCGCGGCTCTCGATGCTGCTGGCCTGCCGCCGTGAAGTGCGGTACGG
GTACGCGACAGGCTTTGCTCATGCGTCCTGCATGACGGCTGTCTTGGACA
CGGTCGACGGCAGCGCGATACAGGACGACCAGGTGCGCGCGCGCCCCCCC
ATGCTGCGCACCGCAATACAGTACTTGAAGTTGGTGTTTCGCTCCCCCTC
TCAAGGTGAAGTTGGGGCTCTCAGTTCAGTAGCGACACCATACAGCCACC
GGGAGCGGCAGCGGTCCTGCATGACGGCCGTCTTCGACACGGTCGACGGC
AGCGTGATACAGGACGACCAGGTGCGTAGCCCCCGCCGTGCTGAGCGTTT
GTTCCCCTCATGTGAAGTTGGGGCTTTCTCAGCTATTGTTGAAGTTCGGT
GGCAAGGTAATACAGCCACTTGGGGAGCGCGGCAGTGGCGGCGCAGCGCG
CCGATGGCGATACAGGACGTCCAGGTGCGCGGGCATCGCCGTGCTGAGCG
CTGCGGCGGCGGGTGAAGCGTCCATTGCGGCTCTCGGCGCTGTTGGCCTG
CCGCTGTGAGGTGCGCTACGCGACGGTCCCTGACGACGCATCCTTCATGA
TGGTCGTCTTCGAGACCATCGACGGCAACGCCGTTCCGAATGATCAGGCC
CCCCTCCGCTGGGTGTTGCGATGGATGATGTCGACGCAGTCCCTCGCAGC
CTGGCTCTGGCAGCACTGGCAGCGCTTGCGTAACCTGCCTGTGCCTTCTG
CGTCGCGTCTGGCTCGGCCCTTGTCTTGTGCCTCGCACAACATTACTGTG
ACAACACCTCTGCGACCGATAGCGCCTAACATATCATGGCCCGCTTCGCC
GCCTCTCGCGCCATGACAGTACTTCAGCGACGCGCTGGAGCCGCTGCTGC
GCGGCGCTGCCGCCGCCGCTGCTGCTGCCGCTGCCGCCGCCATCTGTCAC
CACGGTTTTCGTCACATCCCGGCATCGGCAGCACAGCTACAGTAGCGCCT
GACGTGCCTGCACTTGGAAATATATGTTCATGCACGTCACATTTAGCCTC
GCCGTGTCTTGTGTCGCGCAACAGTACTTTAGCGACGCGCTGGAGCCGCT
GCTGCGCGGCGCCGCCGCGGCGCGGCAGGGCCTCCTGGACATTGCCTCCT
TCCACGTCCTCACCGCCAACATGCGCCGGCTCGACAAGCTGCTGGCGATG
GGATACCCGCCCGAGGCCGCGACGCTGGGACTGCAGCTCACCGGCAACGA
CTCCGCGCGCGCGGTGCAGCTCATCGAGGTGCGCCGACGATGACAATTCG
CCACGTCCTAGGACTGCAGCCAGTTCATGTCCAATTGTACTTTCTGATGA
AATGTGCTGTGAGTGATGACATACTGATCGCTTCGGAAACAGATGTGTCA
AAGGCACTGGCGGCGGGCGACGGCGACGCGCAATCCATGCGTCTCATTGA
TGCGCGTCGTCGATCCACTGCCGCAACATCTGCGGCTATGCGCTGCGGCC
GCGCCGCGAGACGCGGCGGCAGCGCGCTCACTGACTGCAGCGTGGTGCCG
CGGTTGCGTTTGTCGGTGTTTGTCGGCGGTGCCGTCAGCAGAGCTGCTCA
GCGAGGTGCATCGGCAGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCG
TGGTGGCCCGCAGCGGTAGCCTTGCACTTCAACTGCATCCCGAGACACGC
CGCAGCGTGCGCAGCTCGCCGAGGTGCGGCGGCGCCAAGGGCCCGCTGCC
TGACGACCGCCGCAGCGCGCTGTGATCACGCGTTGACGAAGCGCCACAGC
AGAGCGCGCCTTGCAGCGTACGCGGCTCTCACTACTTTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGTGTGCGCGCCGTGCTGCCGGCAGGAGGGCCT
GGGGGCGAAGCTCAGCACCAAGACCCAGTTCTCCCCCATGTCTGGCTCGG
ACGTCTCCGTCTCGCCTGTGAGT
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Coding sequence (CDS) from alignment at Contig_66:495619..498891+

>mRNA_9692 ID=mRNA_9692|Name=jgi.p|Trimin1|136365|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_66:495619..498891+ (Tribonema minus UTEX_B_3156 )
CCGTGCGTGGACGTGTGGGACCAGCAGTCGCTCGTCTACACGACGGCGCA
CCCGGGCGCGGACGAGGTGCTGTGGAACGCCGACGAGGGCTTCTTCTTCC
ACAAGATCAACCGCGCGCTCTGCGGCGACTTTGTCATCGTCGTGCGCTTT
GGCGGCGGCGACGACGACGATAATGCGGCGGCGGGCCTGCCGCCGTACAG
CGACACGCGCGTGCTGCTGCGCTACGCCAACTGCGCGGGCTTCGTGCTGC
CGGGCGTGCCGCTGCGCCTGTCACTCGACGAGATCGACGTCAGCGCGCGC
TACGCGGACGGCTTCGACGGCGGCTTCTGCATGACGGCCGTCTTCGACAC
GGTCGACGGCAGCGCGATACAGGACGACCAGTACTTTAGCGACGCGCTGG
AGCCGCTGCTGCGCGGCGCCGCCGCGGCGCGGCAGGGCCTCCTGGACATT
GCCTCCTTCCACGTCCTCACCGCCAACATGCGCCGGCTCGACAAGCTGCT
GGCGATGGGATACCCGCCCGAGGCCGCGACGCTGGGACTGCAGCTCACCG
GCAACGACTCCGCGCGCGCGGTGCAGCTCATCGAGGAGGGCCTGGGGGCG
AAGCTCAGCACCAAGACCCAGTTCTCCCCCATGTCTGGCTCGGACGTCTC
CGTCTCGCCTGTGAGT
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