mRNA_12641 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A835YNR1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR1_9STRA) HSP 1 Score: 874 bits (2258), Expect = 7.500e-315 Identity = 541/541 (100.00%), Postives = 541/541 (100.00%), Query Frame = 1
Query: 1 MSLEKPPSAGDAETEPATEAANRLATRWRDQSRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRICWAPPGTPGIDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAAALRCVKTLDVKAAAGGDGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAALQAQALAVSVRERLRCAANTQYGDHLPAAAHSRPVYGVMFCASAPQLLLSWSSDGTLKAWDWGAAANDMNGGDFAPLQQRSTAAQLVDVMRITCQHREVLSSGDYPILHCALARDASSVVVAGGDSGARGAAMTGVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQPAGENCTCRSRV 1623
MSLEKPPSAGDAETEPATEAANRLATRWRDQSRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRICWAPPGTPGIDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAAALRCVKTLDVKAAAGGDGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAALQAQALAVSVRERLRCAANTQYGDHLPAAAHSRPVYGVMFCASAPQLLLSWSSDGTLKAWDWGAAANDMNGGDFAPLQQRSTAAQLVDVMRITCQHREVLSSGDYPILHCALARDASSVVVAGGDSGARGAAMTGVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQPAGENCTCRSRV
Sbjct: 1 MSLEKPPSAGDAETEPATEAANRLATRWRDQSRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRICWAPPGTPGIDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAAALRCVKTLDVKAAAGGDGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAALQAQALAVSVRERLRCAANTQYGDHLPAAAHSRPVYGVMFCASAPQLLLSWSSDGTLKAWDWGAAANDMNGGDFAPLQQRSTAAQLVDVMRITCQHREVLSSGDYPILHCALARDASSVVVAGGDSGARGAAMTGVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQPAGENCTCRSRV 541
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: D7FSW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSW0_ECTSI) HSP 1 Score: 203 bits (517), Expect = 5.420e-55 Identity = 171/498 (34.34%), Postives = 213/498 (42.77%), Query Frame = 1
Query: 70 LATRWRDQSRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKG--SKDEVLRICWAPPGTPG--IDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAA----ALRCVKTLDVKAAAGG-DGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRV-QPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAALQAQALAVSVRERLRCAANTQYGDHLPAAAHSRPVYGVMFCASA----------------------PQLLLSWSSDGTLKAWDWGAAANDMNGGDFAPLQQRSTAAQLVDVMRITCQHREVLSSGDYPILHCALARDASSVVVAGGDSGARGAAMTGVPV 1467
LA + D+ ++L+GH+ R FDFQFHPT + A S SEDGT RVWD+ G S +G K EVLR CWAPPG + +A+GSADG+VRLW + R GRD S +L+ V L + A G DGQVY+ FI GG+ L+ A+D +V LWDV T A S H+ GG RNPD+ FVFDAK GSG S LA ALSDGTVRV L A+ L HLT++AW+ DG+ LA+CG + VWD RTWT R+ L HSRPVYG F + A PQLLLSWSSD T+ AWD G A D APL S +P+ C+++ D +AGG + A GVP+
Sbjct: 14 LAACFNDKRCHRRLIGHRARTFDFQFHPTEDA-AISASEDGTARVWDLSSGKCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSADGIVRLWGI--------RHGDGRDEKSGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMC--------------------------LLTASDSSVHLWDVETRKRVSSRALSKVGAHSIGGE-RNPDDLAFVFDAKPRPGSGSS-----VLAVALSDGTVRVGDVLQQGEKAAVLR-----------------GVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLW---------------------------GHSRPVYGAAFYSCAGNGXXXXXXXXXXXXXXGQDCPPQLLLSWSSDETVCAWDTGRATGDAT----APLATLSVEE-------------------GFPVYSCSVSADGRRFALAGGGGDEKSAGFLGVPI 403
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A7S2S0D4_9STRA (Peroxin-7 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0D4_9STRA) HSP 1 Score: 100 bits (248), Expect = 8.050e-19 Identity = 82/291 (28.18%), Postives = 118/291 (40.55%), Query Frame = 1
Query: 613 LMVAADDAVSLWDV------GTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAALQAQALAVSVRERLRCAANTQYGDHLPAAAHSRPVYGVMFCASAPQLLLSWSSDGTLKAWDWGAAANDMNGGDFAPLQQRSTAAQLVDVMRITCQHREVLSSGDYPILHCALARDASSVVVAGGDSGARGAAMTGVPV 1467
++ AA V+LWD+ TG + W ++S G RN + +VFD ++ G +AAALSDG+ R+ G + H+T+V+WA DG +LA + +WD RTW R LQ H RPV+G F ++P L+SWSSDG++ AW+ +A DM+ APL ST RE DYPIL C + ++++AGG G + G PV
Sbjct: 173 VIAAAGSKVNLWDLDATSAPATGRLIAEWEYASLPSGQVYGGERNAAQENYVFDLQISS----LGASHTLIAAALSDGSTRIT--------------GGHGGAVHQNVVALTTSDMVHVTSVSWAADGLSLACSRGDGSIVIWDTRTWRSRGVLQ--------------------------GGHQRPVFGAKFHPASPHFLVSWSSDGSMGAWNTSVSAEDMD----APLSMFST--------------RE---GADYPILSCDFSSAGDALLIAGGSGS--GNSFLGTPV 396
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A2V0NRP3_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRP3_9CHLO) HSP 1 Score: 72.0 bits (175), Expect = 1.880e-9 Identity = 39/84 (46.43%), Postives = 45/84 (53.57%), Query Frame = 1
Query: 106 QLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQ-----RGVSIASAKGSKDEVLRICWAPPGTPGIDLASGSADGLVRLW 342
+ GH RVFD F P ASCSEDGT RVW + R +A G EVLR+ W+P G LA+G ADG VRLW
Sbjct: 9 EAWGHTSRVFDLAFAPADPGLLASCSEDGTARVWSQRHSEGGRWDQVACCSGHTAEVLRVTWSPDGGR---LATGGADGTVRLW 89
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: UPI001C82811D (uncharacterized protein n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C82811D) HSP 1 Score: 64.3 bits (155), Expect = 6.050e-7 Identity = 34/97 (35.05%), Postives = 50/97 (51.55%), Query Frame = 1
Query: 52 TEAANRLATRWRDQSRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRICWAPPGTPGIDLASGSADGLVRLW 342
T +A+R W++Q+ +Q +GH V +P SR ASCS DGT++VWD+ I + G + V I AP G D+ S D +R+W
Sbjct: 164 TASADRTIRLWQNQTEVRQFIGHNDVVRKILLYPDDPSRFASCSNDGTIKVWDIDSANCIQTLSGHESFVYDIALAPTG----DIISTGEDRSIRVW 256
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A6A6WJP0_9PEZI (THO complex subunit 3 n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WJP0_9PEZI) HSP 1 Score: 60.8 bits (146), Expect = 2.900e-6 Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 49 ATEAANRLATRWRDQSRR----KQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRICWAPPG 288
AT AA+R W + +L GH G V +F+PT S ASCS DGTVR+WDV+R SI K + + + W P G
Sbjct: 54 ATGAADRTLRIWNPERTNVKYSTELRGHSGPVEKVEFNPTHESELASCSADGTVRLWDVRRKESIVEIKPNIGGIDLLAWKPDG 137
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A7S4E2U9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2U9_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 6.470e-6 Identity = 73/268 (27.24%), Postives = 105/268 (39.18%), Query Frame = 1
Query: 94 SRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGV---SIASAKGSKDEVLRICWAPP---GTPGIDL-ASGSADGLVRLWAMSAATSTATRGAPGRDGSSAAALRCVKTLDVKAAAGGDGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTL 876
+++++ GH GRVFD + SEDGT +VW + G +A ++ +KDEVLR+ WAPP G L A ADG LW G +A + ++ LD GGD QVY + G + G L+ AA AV WDV G ++W++ Q G +Q +VFD + T+A A+SDGT RV+ + + A L
Sbjct: 11 AKQREFAGHTGRVFDVDLGQD--GLCVTASEDGTAKVWRLADGRLEGEVAQSQ-TKDEVLRVAWAPPIVRDAAGASLLAVAGADGFCNLWR----------------GDDWSAPKSLQRLDH----GGD-QVYGCAWSAC---GDAYGAW------------------------------LLTAAGAAVRTWDVNAGKSIKQWSY----QEPRG-------DQAYVFDVQPAP-RDADDALRATIACAVSDGTARVRDVRLDYDARVL 209
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: L1JGK7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JGK7_GUITC) HSP 1 Score: 60.1 bits (144), Expect = 7.030e-6 Identity = 48/222 (21.62%), Postives = 81/222 (36.49%), Query Frame = 1
Query: 112 LGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRICWAPPGTPGIDLA--------SGSADGLVRLWAMSAATSTATRGAPGRDGSSAAALRCVKTLDVKAAAGGDGQVYALQFIGADGGGSSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVF 753
L G + + P + A+CSED T RVWD+ + +G + + + W+P G + L + +DG +++W R G +K+L K G V+A ++ GN++ AAD+ VSLWD+ G + + ++ + GG +RNPD +VF
Sbjct: 4 LNKVGELRGHESSPVDETLLATCSEDNTCRVWDIAHCEQLKILRGHAEAIYAVSWSPDGRWTLSLLVVMELSVLTAGSDGEIKIWDW-------------RKGKE------IKSLKPK------GDVFAASYV--------------------------------------DNGNIVSAADNVVSLWDLEAGCIIKERTINAETDYVFGGESRNPDKIPWVF 162
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A7S2YZT2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2YZT2_9CHLO) HSP 1 Score: 58.5 bits (140), Expect = 2.810e-5 Identity = 33/98 (33.67%), Postives = 48/98 (48.98%), Query Frame = 1
Query: 103 KQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKGSKDEVLRI----CWAPPGTPGIDLASGSADGLVRLWAMSAATSTATRGAP 384
++ GH + Q+HPT +AA+CSEDGTVR+WDV V K + R+ C P G LA+G DG +++W+ + G P
Sbjct: 67 RKTKGHTAGLTGGQWHPTDREQAATCSEDGTVRIWDVNNMVQKLVLKPQLGKASRVAASTCAFSPS--GALLAAGMVDGTIQVWSAPSGAKAGQTGKP 162
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Match: A0A7S3IVR9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IVR9_9SPIT) HSP 1 Score: 57.4 bits (137), Expect = 3.290e-5 Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 49 ATEAANRLATRWRDQSRRK--QLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWD---VQRGVS----IASAKGSKDEVLRICWAPPGTPGIDLASGSADGLVRLWAM 348
AT + ++ WR + + QL GHK ++D QF P+ + + S D ++VWD ++ GV IA+ +G +D++++ W G+ +AS S DG+V++W M
Sbjct: 3 ATASQDKSIKIWRSKDLHQLGQLKGHKKNIWDLQFSPS-DKQLVTVSGDNFIKVWDLHDIESGVEKQRCIATLQGHQDQLVKALWI---NMGMQIASASVDGVVKIWNM 107 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350507 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12641 ID=mRNA_12641|Name=jgi.p|Trimin1|350507|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2027bp|location=Sequence derived from alignment at Contig_65:20076..28260- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCCTGGAGAAGCCTCCGTCTGCTGGCGACGCAGAAACTGAGCCAGCback to top protein sequence of jgi.p|Trimin1|350507 >Trimin1|350507|estExt_Genemark1.C_Ctg_650004 ID=Trimin1|350507|estExt_Genemark1.C_Ctg_650004|Name=jgi.p|Trimin1|350507|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=542bp MSLEKPPSAGDAETEPATEAANRLATRWRDQSRRKQLLGHKGRVFDFQFHback to top mRNA from alignment at Contig_65:20076..28260- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12641 ID=mRNA_12641|Name=jgi.p|Trimin1|350507|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8185bp|location=Sequence derived from alignment at Contig_65:20076..28260- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_65:20076..28260- >mRNA_12641 ID=mRNA_12641|Name=jgi.p|Trimin1|350507|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1626bp|location=Sequence derived from alignment at Contig_65:20076..28260- (Tribonema minus UTEX_B_3156 )back to top |