Trimin1|352204|estExt_Genemark1.C_Ctg_1120004 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352204
Unique Name	Trimin1\|352204\|estExt_Genemark1.C_Ctg_1120004
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	107

Homology

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BLAST of jgi.p|Trimin1|352204 vs. uniprot
Match: A0A836CNE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.110e-20
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query:    1 WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN 106
            WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN
Sbjct:    1 WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN 106

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352204 vs. uniprot

BLAST of jgi.p|Trimin1|352204 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CNE3_9STRA	1.110e-20	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..63

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:21454..22479 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352204	mRNA_15501	Tribonema minus UTEX_B_3156	mRNA	Contig_112 21453..22724 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352204|estExt_Genemark1.C_Ctg_1120004 ID=Trimin1|352204|estExt_Genemark1.C_Ctg_1120004|Name=jgi.p|Trimin1|352204|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
WCTPARCAGAAAAAAAAAAAAAAAARRRRRQRRRQVSAATPTRRRRRRRR
RRRRRQRRRQRQRRQWWRWREQQCWSSSRGCCAAPANTRSGQGTLGALLH
TVAIGN*