mRNA_12688 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149483
Unique NamemRNA_12688
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A836CA60_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA60_9STRA)

HSP 1 Score: 322 bits (825), Expect = 1.980e-111
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM
Sbjct:    1 KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 161          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A835YGJ9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGJ9_9STRA)

HSP 1 Score: 313 bits (803), Expect = 4.310e-98
Identity = 157/161 (97.52%), Postives = 159/161 (98.76%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            KAMELFCGAGGLSEGAKPFVHTVLASDI+ERACKLFASNH GTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKG+QCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVIS NDCGLPTKRRRVFIM
Sbjct:  607 KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGLQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 767          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A835ZBI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI0_9STRA)

HSP 1 Score: 275 bits (702), Expect = 3.640e-84
Identity = 139/152 (91.45%), Postives = 141/152 (92.76%), Query Frame = 1
Query:   28 GGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            GG +     FVHTVLASDI+ERACKLFASNH GT VMPANINDR AQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQ LDLAQGLGFDHSHNVIS NDCGLPTKRRRVFIM
Sbjct:  529 GGSARAQNRFVHTVLASDISERACKLFASNHCGTAVMPANINDRCAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIM 680          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A835YZF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF8_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.750e-83
Identity = 142/162 (87.65%), Postives = 144/162 (88.89%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANIND--RSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFI 480
            KAMELFCGA GLSEGAKPFV TVLASDI ERACKLFASNH GTTVMPANIND  RSAQLHIIAEA RLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIIS LQVSAA+STVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVIS ND       R V +
Sbjct:   28 KAMELFCGAEGLSEGAKPFVDTVLASDICERACKLFASNHCGTTVMPANINDGHRSAQLHIIAEACRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISKLQVSAAISTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDVTKRIPHRHVVV 189          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A835ZBG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.320e-57
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 303
            KAME FCGAGGLSEGAKPFVHTVLASDI+ERACKLFASNH GTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV
Sbjct:  642 KAMERFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 742          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A835YYY1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY1_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.400e-55
Identity = 84/159 (52.83%), Postives = 117/159 (73.58%), Query Frame = 1
Query:    7 MELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            ME++CGAGG + G K ++ T LA+D ++ A  L+A NH    V+  + N+R  QL +I EA RLGVEV  GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q TL  A+ LGF  SH+V++ +DCGLPT RRRVF++
Sbjct:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLV 159          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A836C7I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.590e-28
Identity = 64/79 (81.01%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPF--VHTVLASDINERACKLF--ASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGP 225
            KAMELFCGAGGLSEGA PF  V TVLASDI+ERAC LF  ASNH GTTVMPANINDRSA+LHI AEARRLGVEV    P
Sbjct:  403 KAMELFCGAGGLSEGATPFQIVDTVLASDISERACNLFQVASNHCGTTVMPANINDRSARLHISAEARRLGVEVQRWTP 481          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A835YXD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.810e-19
Identity = 56/160 (35.00%), Postives = 75/160 (46.88%), Query Frame = 1
Query:    4 AMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            AME++CGAGG + GAK ++ T LA+D ++ AC  +A NH    V+  + N+R  QL +IAEA RLGVE                                                       +Q TL  A+ LGF  SH+VI  +DCGLPT RRRVF++
Sbjct: 2222 AMEMYCGAGGFTHGAKEYLDTALATDFSQSACARYARNHPAARVIQGDANERRVQLALIAEATRLGVE-------------------------------------------------------WQHTLGAARTLGFSFSHHVIRGDDCGLPTMRRRVFLV 2326          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: A0A3L6JLL9_THOAR (DNA (cytosine-5-)-methyltransferase n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A3L6JLL9_THOAR)

HSP 1 Score: 91.3 bits (225), Expect = 1.310e-18
Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    7 MELFCGAGGLSEGAKPFVHTVL-ASDINERACKLFASNHRGTTVMPANINDRSAQLHII--AEARRLG--VEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPE---FQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            ++LFCGAGGLSEG +   H VL A+D+N   C+ +  NH   TV+ AN+ + +   ++I   E++  G  + + +GGPPC  FS +GKR        +I    V         VL+ENV G     +    +  LD     G+ HS  V+   + G+P +RRRVFIM
Sbjct:  159 VDLFCGAGGLSEGLRQAGHRVLVATDLNRHMCETYRLNHENATVVQANVLNEADTDNLIDTIESKLKGRTLNLLAGGPPCQGFSTAGKRSPSDVRNSLIFRTLVFIHKLRPENVLIENVPGIRWIRQGRLLKTMLDALTREGYHHSTLVLKAEEYGVPQRRRRVFIM 325          
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Match: UPI001EFACA08 (DNA cytosine methyltransferase n=1 Tax=Campylobacter sp. RM12651 TaxID=1660079 RepID=UPI001EFACA08)

HSP 1 Score: 88.6 bits (218), Expect = 7.840e-18
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPF--VHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCII--SMLQVSAAVSTVRMVLLENVVGFLSTPE---FQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 483
            K ++LFCGAGG S G +       VL  D N+ A + F  NH+    +  +I+    +  II+ A+ L V    GGPPC  FS+ GKR      +  +    L+V   ++  ++V++ENV   +ST     F + ++  + LG+   + V++  D G+P  R R+FI+
Sbjct:    3 KVLDLFCGAGGFSNGLEQIDDFTCVLGVDFNKHALETFEYNHKNAQALFCDISQDKNKKQIISLAKELCVNTIIGGPPCQGFSLQGKRLGLNDPRNYLFKDFLEVVKGINP-KLVIIENVKTLVSTSSGYFFNEIINTLRKLGYSSDYRVLNAKDFGIPQNRERLFIV 169          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA60_9STRA1.980e-111100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YGJ9_9STRA4.310e-9897.52S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZBI0_9STRA3.640e-8491.45S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZF8_9STRA1.750e-8387.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBG8_9STRA2.320e-5797.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYY1_9STRA3.400e-5552.83S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836C7I0_9STRA4.590e-2881.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXD3_9STRA2.810e-1935.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3L6JLL9_THOAR1.310e-1835.93DNA (cytosine-5-)-methyltransferase n=1 Tax=Thorar... [more]
UPI001EFACA087.840e-1831.55DNA cytosine methyltransferase n=1 Tax=Campylobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:566948..567430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149483|gw1.65.82.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
COG categoryH
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2U0FE@28211|Alphaproteobacteria
Evalue1.28e-15
Seed ortholog766499.C357_17920
Hectar predicted targeting categoryother localisation
TranscriptId149805
TrackFilteredModels1
ProteinId149483
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149483gene_12688Tribonema minus UTEX_B_3156 geneContig_65 566948..567430 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12688_1exon_12688_1Tribonema minus UTEX_B_3156 exonContig_65 566948..567430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12688CDS_12688Tribonema minus UTEX_B_3156 CDSContig_65 566948..567430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149483Trimin1|149483|gw1.65.82.1Tribonema minus UTEX_B_3156 polypeptideContig_65 566948..567430 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12688 ID=mRNA_12688|Name=jgi.p|Trimin1|149483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_65:566948..567430- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAAGCCATGGAACTCTTTTGTGGTGCAGGGGGGCTCAGCGAGGGCGCAAA
ACCGTTTGTGCACACAGTGCTGGCGTCAGACATTAACGAGCGGGCGTGCA
AACTGTTTGCCAGCAACCACCGCGGCACTACAGTAATGCCTGCTAACATC
AACGACCGCAGCGCTCAACTGCACATCATAGCGGAGGCACGCCGACTTGG
GGTTGAAGTCTCCAGCGGTGGACCCCCATGCACTGACTTCAGCATGTCAG
GCAAACGATGCTCTCAGAAGGGCATACAGTGCATCATCAGCATGCTGCAG
GTCTCAGCGGCGGTCAGCACAGTGCGCATGGTGCTATTGGAGAACGTGGT
GGGATTCCTGAGCACACCTGAGTTCCAGCAGACTCTAGACCTAGCTCAGG
GCTTAGGGTTTGACCACAGCCACAACGTCATCAGTGTCAACGACTGCGGC
CTGCCTACAAAGCGGCGCCGTGTATTCATCATG
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protein sequence of jgi.p|Trimin1|149483

>Trimin1|149483|gw1.65.82.1 ID=Trimin1|149483|gw1.65.82.1|Name=jgi.p|Trimin1|149483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANI
NDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQ
VSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCG
LPTKRRRVFIM
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mRNA from alignment at Contig_65:566948..567430-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12688 ID=mRNA_12688|Name=jgi.p|Trimin1|149483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_65:566948..567430- (Tribonema minus UTEX_B_3156 )
AAAGCCATGGAACTCTTTTGTGGTGCAGGGGGGCTCAGCGAGGGCGCAAA ACCGTTTGTGCACACAGTGCTGGCGTCAGACATTAACGAGCGGGCGTGCA AACTGTTTGCCAGCAACCACCGCGGCACTACAGTAATGCCTGCTAACATC AACGACCGCAGCGCTCAACTGCACATCATAGCGGAGGCACGCCGACTTGG GGTTGAAGTCTCCAGCGGTGGACCCCCATGCACTGACTTCAGCATGTCAG GCAAACGATGCTCTCAGAAGGGCATACAGTGCATCATCAGCATGCTGCAG GTCTCAGCGGCGGTCAGCACAGTGCGCATGGTGCTATTGGAGAACGTGGT GGGATTCCTGAGCACACCTGAGTTCCAGCAGACTCTAGACCTAGCTCAGG GCTTAGGGTTTGACCACAGCCACAACGTCATCAGTGTCAACGACTGCGGC CTGCCTACAAAGCGGCGCCGTGTATTCATCATG
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Coding sequence (CDS) from alignment at Contig_65:566948..567430-

>mRNA_12688 ID=mRNA_12688|Name=jgi.p|Trimin1|149483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_65:566948..567430- (Tribonema minus UTEX_B_3156 )
AAAGCCATGGAACTCTTTTGTGGTGCAGGGGGGCTCAGCGAGGGCGCAAA
ACCGTTTGTGCACACAGTGCTGGCGTCAGACATTAACGAGCGGGCGTGCA
AACTGTTTGCCAGCAACCACCGCGGCACTACAGTAATGCCTGCTAACATC
AACGACCGCAGCGCTCAACTGCACATCATAGCGGAGGCACGCCGACTTGG
GGTTGAAGTCTCCAGCGGTGGACCCCCATGCACTGACTTCAGCATGTCAG
GCAAACGATGCTCTCAGAAGGGCATACAGTGCATCATCAGCATGCTGCAG
GTCTCAGCGGCGGTCAGCACAGTGCGCATGGTGCTATTGGAGAACGTGGT
GGGATTCCTGAGCACACCTGAGTTCCAGCAGACTCTAGACCTAGCTCAGG
GCTTAGGGTTTGACCACAGCCACAACGTCATCAGTGTCAACGACTGCGGC
CTGCCTACAAAGCGGCGCCGTGTATTCATCATG
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