mRNA_12677 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142933
Unique NamemRNA_12677
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A835YLX8_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX8_9STRA)

HSP 1 Score: 545 bits (1403), Expect = 9.960e-196
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGAPVPLPTVPLSLWG 828
            GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGAPVPLPTVPLSLWG
Sbjct:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGAPVPLPTVPLSLWG 276          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A4D9CU84_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU84_9STRA)

HSP 1 Score: 314 bits (805), Expect = 2.150e-100
Identity = 155/260 (59.62%), Postives = 198/260 (76.15%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWAT 780
            G+GA S V RC +R +G  +A K++DLRPL+ RE F+  RLRREV IM++L HP I+ +E  FE    L+LVLE+A+G ELFD+IL +KRY+E+ ARP+F+QVA AL YLH ++++HRDVKPEN+++ D +S +G +P AKLLDFGLSKM+G+D GSAARTFVGTPCYLAPEVE R+ G+GG YG  VDCWSLGAVLYVML ARFPEF    GG  +V++  P W G+S AAK L+R LM  DP  R T ++AL+  W T
Sbjct:   77 GRGAFSVVHRCTNRVTGEDFAVKLMDLRPLQLRENFDQARLRREVEIMQRLEHPHIIRLEGVFEDASTLVLVLEYARGTELFDSILQKKRYTEETARPIFVQVAHALAYLHRLHIVHRDVKPENVILLDALSPEGFYPFAKLLDFGLSKMIGQDDGSAARTFVGTPCYLAPEVEARAYGRGGGYGTKVDCWSLGAVLYVMLVARFPEFDRSQGG-MAVKLEAPAWGGVSAAAKDLLRCLMQVDPGLRFTVEEALQHPWVT 335          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: D7G8N3_ECTSI (Calcium/ calmodulin-dependent protein kinase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N3_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 4.610e-94
Identity = 166/291 (57.04%), Postives = 202/291 (69.42%), Query Frame = 1
Query:    1 GKGASSTVWRC------------------VDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMG-SAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGAPVPLPTVPL 816
            G GAS TVW+C                   D   G  YAAK+IDLRP K RERF+++RL REV+IMR+L HP+I+++  A +T +QL+L+LE+A GVELFDAIL++  +SE +ARPVF+QVARAL Y+HS +++HRDVKPEN+M+ D  + DGL+PEAKLLDFGLSK +  D G S ARTFVGTP YLAPEVE R  G+G  YG  VDCWSLGA+LYVML ARFPEF V G  R+ VRM G  WD +S  AK LIR LMA D   R+T D+ALR  W    A    P  PL
Sbjct:   47 GSGASGTVWKCRLAPGNGPPKRAGGPVAGEDPVPGRIYAAKIIDLRPFKLRERFSMQRLMREVDIMRRLRHPNIIHLVEALDTPEQLVLILEYAPGVELFDAILSKASFSESEARPVFVQVARALQYMHSKSIVHRDVKPENVMIIDRTAPDGLYPEAKLLDFGLSKAIDADTGGSVARTFVGTPSYLAPEVEERKGGKGKPYGTPVDCWSLGAMLYVMLVARFPEFQVQGA-RKHVRMHGAAWDKVSAEAKELIRNLMAFDAGARLTVDKALRHPWLGDLAARDAPPSPL 336          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A835YWD1_9STRA (Putative death-associated protein kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD1_9STRA)

HSP 1 Score: 277 bits (708), Expect = 1.730e-91
Identity = 138/173 (79.77%), Postives = 158/173 (91.33%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEV 519
            GKGASSTVWRC  R  G A AAKV+DLRPLKFRERF++ERLRREV+IMR+L HP+IV +E+ FET+DQL+LVLE+A+GVELFDAIL R RY+EDDARP+FLQVARALYYLHS+ ++HRDVKPENIMV +  +ADGL+PEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEV
Sbjct:    1 GKGASSTVWRCARRADGDALAAKVMDLRPLKFRERFSMERLRREVDIMRQLRHPNIVRLEDVFETDDQLVLVLEYARGVELFDAILTRGRYTEDDARPIFLQVARALYYLHSLQIVHRDVKPENIMVSE--TADGLYPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEV 171          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: W7TL39_9STRA (Protein serine threonine kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL39_9STRA)

HSP 1 Score: 278 bits (710), Expect = 4.120e-90
Identity = 132/207 (63.77%), Postives = 168/207 (81.16%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPE 621
            G+GA S V RC +R +G  +A K++DLRPL+ RE F+  RLRREV IM++L HP I+ +E  FE    L+LVLE+A+G ELFD+IL +KRY+E++ARP+F+QVA AL YLH ++++HRDVKPEN+++ D +S +G +P AKLLDFGLSKM+G+D GSAARTFVGTPCYLAPEVE R+ G+GG YG  VDCWSLGAVLYVML ARFPE
Sbjct:   77 GRGAFSVVHRCTNRITGEDFAVKLMDLRPLQLRENFDQARLRREVEIMQRLEHPHIIRLEGVFEDASTLVLVLEYARGTELFDSILQKKRYTEEEARPIFVQVAHALAYLHRLHIVHRDVKPENVILLDALSPEGFYPFAKLLDFGLSKMIGQDDGSAARTFVGTPCYLAPEVEARAYGRGGGYGTKVDCWSLGAVLYVMLVARFPE 283          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A7S3HNC2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNC2_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.740e-88
Identity = 148/261 (56.70%), Postives = 187/261 (71.65%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQ 783
            GKG  STV++  DRR+G  YA K++DLRPL+ RERFN  RLRREV+IM++LHHP+I+   + FE  D L++V+E+  G ELFD IL RK + E+DARP+F+Q+ARALYYLHS+N+LHRDVKPEN++V  +  A G    AKLLDFGLSK  G   GSAA+TFVGTPCY+APEVE  S+G GG+Y    DCWSLGA+LYVML ARFPEF     G+  V+++  +W  +S  AK LIR LM  +P  R+T    L   W  Q
Sbjct:   75 GKGGFSTVYQTKDRRTGKDYAVKIVDLRPLRLRERFNPLRLRREVDIMKRLHHPNIIQFVDVFEDNDNLMMVMEYCPGQELFDVILDRKFFHEEDARPIFVQIARALYYLHSLNILHRDVKPENVLVSSIPDAQGNIV-AKLLDFGLSKNAGN--GSAAKTFVGTPCYVAPEVEYTSKGLGGTYSFPADCWSLGALLYVMLVARFPEFEQDSSGKIVVKLSPSLWGSVSSEAKDLIRSLMNTNPAARLTMGSTLMHPWLKQ 332          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A7S3XLU5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLU5_HETAK)

HSP 1 Score: 257 bits (657), Expect = 1.400e-81
Identity = 144/274 (52.55%), Postives = 185/274 (67.52%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKR--YSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVL-GGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGAPVPLPTVP 813
            G GASS V+ C + ++GV YA KV+D+RPLKFR  F+  ++  EV+I++K  HP+IV + +     D+L L++E+A G ELFD IL +    Y+E+ ARP+F QVA+AL YLHS+ ++HRD+KPENI++ D    +   P AK+LDFGLSK V   M S A+TFVGTPCYLAPEVE  SR    +YG  VD WSLGAVL+VML ARFPEF  L GG +  VR +  +W G S AAK LI GLM   P +R+T  QAL   W T G P+ LP  P
Sbjct:   45 GSGASSIVYTCTNMKNGVEYAVKVMDIRPLKFRADFSKSKMINEVHILQKAKHPNIVQLVDTILEGDRLYLIMEYAPGEELFDGILNQPEGHYTEEKARPIFHQVAQALVYLHSVGIIHRDIKPENILLLDNPDPNST-PVAKILDFGLSKNVESGM-SMAKTFVGTPCYLAPEVES-SRQTKAAYGKEVDAWSLGAVLWVMLVARFPEFEPLPGGAKGPVRFSPEIWSGASAAAKDLIAGLMCPSPQRRLTVAQALAHPWLTAGPPLALPRPP 315          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A7S2WFE1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFE1_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.070e-79
Identity = 145/262 (55.34%), Postives = 178/262 (67.94%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFP-EAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGS---YGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVW 774
            GKGA STV RCV   +G A A KVIDLRPL+ R+ F+  RL REV IMR+L HP+IV + + FE  D L+LV+E   GVELFD+IL++ RY+ED+ARPVF+Q+A AL YLH  N++HRD+KPENI++ +    +       KLLDFGLSK +  + GSAA+TFVGTPCYLAPEVE      G S   YG AVD WSLGAVL+V LAA+FP F     G   V + G  W+G +   K LIR LM  DP QR+T DQAL   W
Sbjct:   62 GKGAFSTVHRCVRHDTGEACAVKVIDLRPLRLRQHFDAHRLLREVTIMRRLDHPNIVKLYDVFEEPDSLLLVMELVPGVELFDSILSKSRYTEDEARPVFIQIASALKYLHDQNIVHRDIKPENIVLVEYSKGERKNGCTVKLLDFGLSKSLDSEFGSAAKTFVGTPCYLAPEVESLKTTNGTSGQTYGLAVDVWSLGAVLFVTLAAQFPAFD-RATGVPLVLLDGKAWEGATPVVKDLIRNLMHPDPAQRLTMDQALSHPW 322          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A7S1UJ38_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ38_9STRA)

HSP 1 Score: 245 bits (625), Expect = 8.490e-72
Identity = 140/285 (49.12%), Postives = 184/285 (64.56%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMV-----------RDVVSADGLFPEAKLLDFGLSKMVG-EDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGA---PVPLPTV 810
            G+GA STV++C  R +G+ +AAKVIDLRPL+ R+ F ++RLRRE  IMRKL +P I+ +E  FET D LILV+E+  GVELFDAI+A++   E  A  +F Q   AL YLH  +++HRD+KPENI++            D  +A   +P  KLLDFGLSK +   + GSAARTFVGTPCY+APEVE  ++G+   YG  VD WS GA+LYVML ARFPE   +      V M      G+S  A+ LIR LM  DP +R+TAD A+   W  + A   PVP+ ++
Sbjct:   30 GRGAFSTVYKCGHRGTGMEFAAKVIDLRPLRLRQAFKIDRLRREYEIMRKLKNPHIIQLEEVFETADTLILVMEYCPGVELFDAIIAQRSCPEPAAAIIFYQCLVALSYLHRKHIIHRDIKPENILLCKADAEGRSTADDPTAASRDYPMVKLLDFGLSKTLSPSEGGSAARTFVGTPCYVAPEVEANAQGKKQEYGTKVDLWSAGALLYVMLIARFPE---VDRETYDVSMKTLERAGVSAGAQDLIRKLMEADPEKRLTADAAMAHPWLAEAARVVPVPVTSI 311          
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Match: A0A7S2C7L0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7L0_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.410e-70
Identity = 134/268 (50.00%), Postives = 178/268 (66.42%), Query Frame = 1
Query:    1 GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRKLHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVFLQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKMVGEDMGSAARTFVGTPCYLAPEVEM---RSRGQG-GSYGAAVDCWSLGAVLYVMLAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTADQALRSVWATQGAP 792
            GKGA S V +CV+  +G  YA KVID+RP + R  F+  R+ REV I+R++ HP+++ +   ++  D  +LV+E+ +G ELFDAI+ R R++EDDA+ V  Q+A AL  LHS  + HRDVKPENI +   V  DG     KLLDFGLSK++  ++GS ART VGTPCY+APE+E    R +  G  +YG  VDCWSLG VL VML ARFPEF    G    V++ G  ++ +S  AK++IRGLM  DPT+RMT +QAL   W T G P
Sbjct:  144 GKGAFSVVHKCVELATGNLYAVKVIDIRPFRLRPNFDERRMLREVKILRQIDHPNVIKLHEVYQENDVFMLVMEYCEGTELFDAIIRRGRFAEDDAKDVLAQIADALASLHSHFIAHRDVKPENIQLLPAV--DGEPAVVKLLDFGLSKVIDSEVGSEARTMVGTPCYIAPEIETLKERRKTDGTATYGIEVDCWSLGCVLLVMLVARFPEFDRTSG-VPIVKLDGKGFEHMSSGAKSMIRGLMNPDPTKRMTMNQALSHPW-TVGEP 407          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142933 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLX8_9STRA9.960e-196100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A4D9CU84_9STRA2.150e-10059.62Protein kinase domain-containing protein n=1 Tax=N... [more]
D7G8N3_ECTSI4.610e-9457.04Calcium/ calmodulin-dependent protein kinase 1 n=1... [more]
A0A835YWD1_9STRA1.730e-9179.77Putative death-associated protein kinase (Fragment... [more]
W7TL39_9STRA4.120e-9063.77Protein serine threonine kinase n=1 Tax=Nannochlor... [more]
A0A7S3HNC2_9STRA1.740e-8856.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3XLU5_HETAK1.400e-8152.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WFE1_9STRA1.070e-7955.34Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1UJ38_9STRA8.490e-7249.12Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C7L0_9STRA1.410e-7050.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:399993..404846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142933|gw1.65.60.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04020,ko04024,ko04211,ko04371,ko04380,ko04720,ko04722,ko04725,ko04921,ko04925,ko05031,ko05034,map04020,map04024,map04211,map04371,map04380,map04720,map04722,map04725,map04921,map04925,map05031,map05034
KEGG koko:K05869
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
Evalue7.55e-95
Seed ortholog2880.D7G8N3
Hectar predicted targeting categoryother localisation
TranscriptId143255
TrackFilteredModels1
ProteinId142933
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142933gene_12677Tribonema minus UTEX_B_3156 geneContig_65 399993..404846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142933Trimin1|142933|gw1.65.60.1Tribonema minus UTEX_B_3156 polypeptideContig_65 399993..404846 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12677_6exon_12677_6Tribonema minus UTEX_B_3156 exonContig_65 399993..400151 -
exon_12677_5exon_12677_5Tribonema minus UTEX_B_3156 exonContig_65 400649..400801 -
exon_12677_4exon_12677_4Tribonema minus UTEX_B_3156 exonContig_65 401363..401500 -
exon_12677_3exon_12677_3Tribonema minus UTEX_B_3156 exonContig_65 402471..402542 -
exon_12677_2exon_12677_2Tribonema minus UTEX_B_3156 exonContig_65 403655..403780 -
exon_12677_1exon_12677_1Tribonema minus UTEX_B_3156 exonContig_65 404667..404846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12677CDS_12677Tribonema minus UTEX_B_3156 CDSContig_65 404667..404846 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12677 ID=mRNA_12677|Name=jgi.p|Trimin1|142933|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_65:399993..404846- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAAGGGGGCCAGCAGCACGGTATGGCGCTGCGTGGACCGCAGATCAGG
CGTCGCGTATGCGGCCAAGGTCATCGACCTGCGCCCGCTAAAGTTCAGGG
AGAGGTTCAACGTGGAGCGCCTCCGGCGCGAGGTGAACATCATGAGGAAG
CTCCACCACCCGAGCATCGTCAACATGGAGAACGCCTTCGAGACGGAGGA
CCAGCTGATACTGGTGCTGGAGTTCGCGCAGGGCGTGGAGCTCTTTGACG
CGATCCTCGCGCGCAAGCGCTACAGCGAGGACGATGCGCGGCCCGTTTTC
CTGCAGGTGGCGCGCGCGCTGTACTACCTGCACTCCATGAACGTCCTTCA
CAGAGATGTAAAGCCCGAAAACATAATGGTGCGCGACGTGGTCTCAGCGG
ACGGGCTCTTCCCGGAGGCCAAGCTGCTGGACTTCGGGCTCAGCAAGATG
GTCGGCGAAGACATGGGTTCCGCAGCGCGGACGTTCGTTGGCACGCCGTG
TTACCTCGCTCCTGAGGTGGAGATGCGCAGCCGCGGGCAGGGCGGCAGCT
ACGGCGCGGCGGTGGACTGCTGGAGCCTCGGCGCGGTGCTGTACGTGATG
CTAGCGGCGCGCTTCCCGGAGTTCACCGTGCTGGGCGGGGGGCGCCAGTC
CGTACGCATGGCAGGCCCGGTCTGGGACGGCATCAGCGACGCAGCCAAGG
CGCTCATCCGCGGCCTCATGGCGCATGACCCGACGCAGCGCATGACAGCG
GACCAGGCGCTGCGCTCCGTGTGGGCCACGCAGGGGGCGCCGGTCCCCCT
CCCCACCGTCCCCCTGTCGCTCTGGGGG
back to top

protein sequence of jgi.p|Trimin1|142933

>Trimin1|142933|gw1.65.60.1 ID=Trimin1|142933|gw1.65.60.1|Name=jgi.p|Trimin1|142933|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
GKGASSTVWRCVDRRSGVAYAAKVIDLRPLKFRERFNVERLRREVNIMRK
LHHPSIVNMENAFETEDQLILVLEFAQGVELFDAILARKRYSEDDARPVF
LQVARALYYLHSMNVLHRDVKPENIMVRDVVSADGLFPEAKLLDFGLSKM
VGEDMGSAARTFVGTPCYLAPEVEMRSRGQGGSYGAAVDCWSLGAVLYVM
LAARFPEFTVLGGGRQSVRMAGPVWDGISDAAKALIRGLMAHDPTQRMTA
DQALRSVWATQGAPVPLPTVPLSLWG
back to top

mRNA from alignment at Contig_65:399993..404846-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12677 ID=mRNA_12677|Name=jgi.p|Trimin1|142933|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4854bp|location=Sequence derived from alignment at Contig_65:399993..404846- (Tribonema minus UTEX_B_3156 )
GGCAAGGGGGCCAGCAGCACGGTATGGCGCTGCGTGGACCGCAGATCAGG CGTCGCGTATGCGGCCAAGGTCATCGACCTGCGCCCGCTAAAGTTCAGGG AGAGGTTCAACGTGGAGCGCCTCCGGCGCGAGGTGAACATCATGAGGAAG CTCCACCACCCGAGCATCGTCAACATGGAGGTGGGTGCGGCGCGCGCATG GAGCGCGAAACACGTCAATGTTGAAAGCGCGCTCGAGTGTGCTGCGCATT AAATGTCCCAGCGGCCGCGCTTGGGAAGCGCTTTGGGTATGGACGGGTCT AGCATCGCCGGAGCGCACCGAAGCGCGCTCGCTGCAGCAGCGCTTGCTCG GTGTGGGCGGAGTACGCACAGGAGCGGTCAATGCGGCACAGCGCAGCAGA TGAGGTGCGGCATTTTTGCGGCACGATACCTGCCCTGCGCATGCTCGTCG ACCGCAGCACGATGGCGGTGTTGCTGTGTGAATCGGGCCGCATGCCTGCC AGAGCACTGCCGCGGATGCCCATCTACGCCCGCCGTAGGCAGAACTAGCG GGAGCAGCGAGTGGCGCAGCCGATGCGCTGCACGGTGCTGCGCTGCGCGC GCGCGCAGTGGGTCAGACCTAGCACCTGTGACGCTGACGACCCTGCTTGC TGCAATTATTGAACAGGTCACGCAGCGAATTGCAGTGACATGTGTCGGCC GTGCGCATCGGACGCCGTGCGCCAGGCAGGGCGCTCGTACGCAACGGCCG CTGCCGCTGACCCGGCAACAGTGCGGCTGTGACACCCCCCTGACTGCCAC TGAGCAGCTGCTGTGCATTGCTTGGGCAGTTGCTGTACGTTGCTGAGCGC TGCTGCTGCTTGCGCGCGCTGCTGCTGCTGCTTGTGCGCGCGCACATCTG CCGCTTTCGCGTCAGACGCAGCGCGGCCGCGGTTATGCCGCGCCACACCG CCGCTGCTCGCCAAACGCTGTTGCGGCAATTCATCGCGCCTGACCCAGGC TGACCCAGGCTGACCCAGCTGCTGCATGTTGCTGAGCGCTGCTGCTGCTG CTTCCCGCTTGCGCAGAACGCCTTCGAGACGGAGGACCAGCTGATACTGG TGCTGGAGTTCGCGCAGGGCGTGGAGCTCTTTGACGCGATCCTCGCGCGC AAGCGCTACAGCGAGGACGATGCGCGGCCCGTTTTCCTGCAGGTGAGCGC GCTGGGGGGGGGGGGGGGGGGTTGAGCACTGCTGCTGCTACAGCGAGCAC GACGCGCGGCTCCGTATTCCTGCAGGTGAGCGCTTGGGGGGGGGGGGGGG GGGATGAAGGGGGCAGCGCGGGGGGGGGGGGGGGGGCAGCGGGGGGGGGG GCAGAAGGGGTCATTGAGCTCTGCTACAGCGAGGACGACGCGCGGCCCCC CGTGTTCCTGCAGGTGAGCGTGGGGGGAAGGGGGGGGGCAGGGGGGGGGG GGCTTGAGCACTATTGCTGTGTACTGCGGCGGCGCGTTTTGGTCAGACCT TCGCACGAGGTGTCGTGTCTGAACTACACGTGCGTGTGCCTGTGGATCGA GACGGCGGTTTTGTTGCACGCTTTGATTGGCTGCGACGGCAGGTGGGCGA GAGTGATGTTGGAGCACTGCTGCATGGCAGCATCTTTGTGCGCAGGTGTG CTGCATGGCACGGCAGTGCTCACGACGCAGGCGCGTATCTTTGTGAAGCA AGACGTGCACGTGCGTATCTTTGTGAAGCAAGACGGTGGTGTCGGCGTGC CTGTTGTAGGACCGTTCGCGTCGCCGATTAGGTGTTCGCAGCCCCCCCTG CTGCGCTGACAAAGACACAGGGGTGTTTCAGAGTAGCCGCTAGCGGCAAA TGCGTGACTGACGACGTTGTCATGAGGGGAACTGCGTGCGTTACGTCGTT CAGGTGCTTGTGGTGTGCCCCGTTGACGGCAATGTTCACATGCGGTCAAA CCCATTTGCTGCGCTGTGGGGGAGTCGGGCCAGCTTAGGGCCAGGGTTAG GGTTAGCTGGCAGTGGCCTTCTTGTGAAAGGCGCACCCCCGCTTGCCGCC TGAGTGTTAGTCTAGGGTTAGTTTTAGTGTAAGGGTTGGGATTTGTTGCC CGGTGAGCGCTGGCGCTTGCCTGAGCGACTCTGACTCTGACTCTCCTGTC CGCTGCTGAGCCCTGCGCTGCAGGTCGCGCGCGCGCGCGCTGTACTACCT GCACTCCATGTCAGTCATACACAGGGATGTAAAGCCGGAGAACTGAGCTA GAGCGGCTGGCATACACTGACTCTCGTGTCCGCTGCTGTCCGCTGTGCGC ACAGGTGGCGCGCGCGCTGTACTACCTGCACTCCATGAACGTCCTTCACA GAGATGTAAAGCCCGAAAACATAATGGTGGGTGCCTTCCCGGACCGTATG ACGGTTCTCTACTTGTGTAGTACCTATTCATTACCGTAAATGCCCGAGTT AGCGCCCCCCCCCCGTACAGGTCCATCCCCCTTGCAAACGCCCATGGGCA TGCTTGCCAGGGCAAAGTGGGCAACAACGCCCACCCCCCCCCTGCCCCCT AGCAACCATAATGGCTGCAGGTTTGGCTCCGGGGCCTCGCAGAAAATTAA GCGAAGTTCAAGCCGAACTTGAAGTCATTATCGCTGAGATTCTCGACTGC CGACGATGGCAGGCAACAATGCTTGCTTGATAAGAGCTGTCGTAGCTGCA GCAGCTTCGCCAGTACCGCCATTGCCGTTGTCAGGGATGCCCGCTATTGC CACCACAACTTTGCGCACCTGTAAACGCCATGGTGGGTGCGTTGCGCAGA TACTGCCCCCTTCATCCGTACTGCCTTCAATACTTGGCGCGAAATTAAGG TCATTGTCACTGGCGTAGAAAATTGTGGTAGACCTGGATCATATTCTGGT ATCATGTGATGGTGGGTGCCTCCGTACGGTCTTGGTGATAGTGCATTTTG AAACATTTTTTAAGGTCACTGTCTGTTTTAATGTACTTGCTATAATACAA TTTTATGAGTTCTCGCTCAGGGCGCGAAAAAGACCAGATGAATGGCATCT AAGCTTTCTGCACGGAATTTACATGTCGTGTGATAGCTTGCTGTTCGGAA TGCGCATGTTATGTGACAGTCTTAAAGTGTCTCAATGACAACAACTCAAA CAACGCCGCCGCCAAATGCACTTCGCACCTAGCCAATGAAAGGGTGGTGG ATGTGAAGCATATTTCGTGCGACTGACCAAGGTGGACGCATTAAGCGTCG AGCAGGAGGTACCAATCCCCGGCGTGCCATGCTGCCCTCCGTCAGCTCTC AATCAGCACGATAACTTCAACTAAACTTCAACTTGAATGGTGGCAGGTGC GCGACGTGGTCTCAGCGGACGGGCTCTTCCCGGAGGCCAAGCTGCTGGAC TTCGGGCTCAGCAAGATGGTCGGCGAAGACATGGGTTCCGCAGCGCGGAC GTTCGTTGGCACGCCGTGTTACCTCGCTCCTGAGGTGCGTCACTTGTCGA AGTAGTACACAAGTCCTTGTTGTTAATCTGTGTTGCCTGTCTCCAGATGT GCGTGACATCACATCTGTACTACTTCGTGAAGCGGTGCATTGCAGGAGGA GAGGTATTTGTTAAGATCAGAGTAAAGTGCTGGCCTCACGAAAGCGTCGC CTGTGCGTGATAACATTGCCGACGCAGGTGGAGATGCGCAGCCGCGGGCA AACTTCAAGTTGAAGTTGAATTATGTTTCTAATTGCTTTCATCATCACGG AACGCCGCTGTGCGTGACTTTGACGTCGCGGCAGGTGGAGATGCGCAGCC ACGGGCAGGGCGGCAGCTACGGCGCGGCGGTGGACTTCAATTTAAAGTTG AAGTTGCTCTAGTCGCCCTCAGAATTTCACCTGCGTGACCGCTTCTGACC GCGTCGTCGCTGCAGATGGAGATGCGCAGCTGCGGGCAGGGCGGCAGCTA CGGGCGCTGCGGTGGATCTTGGTGGATCACAAACTTCAATCTGAAGTAGA AGTTACATTCCTAACGCTTTCATCATCACGAAAACGCCGCCGCAGGTGGA GATGCGCAGCCGCGGGCAGGGCGGCAGCTACGGCGCGGCGGTGGACTGCT GGAGCCTCGGCGCGGTGCTGTACGTGATGCTAGCGGCGCGCTTCCCGGAG TTCACCGTGCTGGGCGGGGGGCGCCAGTCCGTACGCATGGCAGGCCCGGT GGGTGCCTCAAAACTCAAGTTGAAGTGCTTTAAATTCAAGTTGAAGTGCC TAATCTTTATTACTGGAGGAGCTAGTAGCTACGTGTGAAGCTTGCAGGGA GGTGGCAAAGCATTAGACGTCAATCTCGGCTGCCTTGCACTTTTGCAAGT GCTTCTTTGGCAAGTATTGAAGCTGATTGCTGAGGCGCCCTGCACACACG CACGCGGCCATTCGCGAGCGTCTGTGACGGCATCAGCGACTCAGGCGCGC ACATGTCGGTGGCCTCATGGCGCACGACCTCTCACACTGGTGCATTTTGA CTCCCAAAGTTCAAGGATCCACGTTGCTGAAGTCACACTATGGTCAACTT GCACTTGCATGCAGGTCTGGGATGGCATCAGCGACGTGGCCAAGGCGCTC ATCCGCGGCCTCATGGCGCACGACCCCACTTTCAATGATCCGCAATCAAA CTTCAAGTACTCAAACTTCAATGCGGCCAACCCCCCCCCGCGCAGGTCTG GGACGGCATCAGCGACGCAGCCAAGGCGCTCATCCGCGGCCTCATGGCGC ATGACCCGACGCAGCGCATGACAGCGGACCAGGCGCTGCGCTCCGTGTGG GCCACGCAGGGGGCGCCGGTCCCCCTCCCCACCGTCCCCCTGTCGCTCTG GGGG
back to top

Coding sequence (CDS) from alignment at Contig_65:399993..404846-

>mRNA_12677 ID=mRNA_12677|Name=jgi.p|Trimin1|142933|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_65:399993..404846- (Tribonema minus UTEX_B_3156 )
GGCAAGGGGGCCAGCAGCACGGTATGGCGCTGCGTGGACCGCAGATCAGG
CGTCGCGTATGCGGCCAAGGTCATCGACCTGCGCCCGCTAAAGTTCAGGG
AGAGGTTCAACGTGGAGCGCCTCCGGCGCGAGGTGAACATCATGAGGAAG
CTCCACCACCCGAGCATCGTCAACATGGAGAACGCCTTCGAGACGGAGGA
CCAGCTGATACTGGTGCTGGAGTTCGCGCAGGGCGTGGAGCTCTTTGACG
CGATCCTCGCGCGCAAGCGCTACAGCGAGGACGATGCGCGGCCCGTTTTC
CTGCAGGTGGCGCGCGCGCTGTACTACCTGCACTCCATGAACGTCCTTCA
CAGAGATGTAAAGCCCGAAAACATAATGGTGCGCGACGTGGTCTCAGCGG
ACGGGCTCTTCCCGGAGGCCAAGCTGCTGGACTTCGGGCTCAGCAAGATG
GTCGGCGAAGACATGGGTTCCGCAGCGCGGACGTTCGTTGGCACGCCGTG
TTACCTCGCTCCTGAGGTGGAGATGCGCAGCCGCGGGCAGGGCGGCAGCT
ACGGCGCGGCGGTGGACTGCTGGAGCCTCGGCGCGGTGCTGTACGTGATG
CTAGCGGCGCGCTTCCCGGAGTTCACCGTGCTGGGCGGGGGGCGCCAGTC
CGTACGCATGGCAGGCCCGGTCTGGGACGGCATCAGCGACGCAGCCAAGG
CGCTCATCCGCGGCCTCATGGCGCATGACCCGACGCAGCGCATGACAGCG
GACCAGGCGCTGCGCTCCGTGTGGGCCACGCAGGGGGCGCCGGTCCCCCT
CCCCACCGTCCCCCTGTCGCTCTGGGGG
back to top