Trimin1|350504|estExt_Genemark1.C_Ctg_640092 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350504
Unique Name	Trimin1\|350504\|estExt_Genemark1.C_Ctg_640092
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	667

Homology

[Close]

BLAST of jgi.p|Trimin1|350504 vs. uniprot
Match: A0A835YM59_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM59_9STRA)

HSP 1 Score: 920 bits (2378), Expect = 0.000e+0
Identity = 666/666 (100.00%), Postives = 666/666 (100.00%), Query Frame = 0

Query:    1 MNPVDDNLQDEFDFEAGAPYPPKPSADSASTTYRDAFFAVIFALHLAVILALAIFKGIPAVAQGGIDQVDVDPAGGSETPVNDGDNPIPLVLSLGVVMVLGAFLSTVWVKVLVSHGESVVRCTILSTVAWFVLSAVAAALLGQSGGAVALLVLAGIAYWYYVLINSHIEFAGKNLKVACSAVLAMPGTVTVAVTLLTVQALWCMIWGLAMXXXXXXXXXXMLGVATNFSAPITAADGTVYDADDCTTYETQRPNPTFSAACTGYYGGGTCFKCVCGGATVYDDAECRSERVSAGVYALMLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIWGCGVIANISHCTTAGAVAAWWFAGRNGPAADASSPVTASLRRACTTXXXXXXXXXXXXXXXXXXXXXXXXLRRSRRGMGALWAAAAECLAHAAERVVRVFSRYALVHAAVYGTTLPVAGSEVEVESNLXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVXXXXXXXXXXXXXXXXXXXXXXXXXVEVESNLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXMCELVLAGAACLTAAHGRRAHRQSSPKVWALFKRRGWSAIVNDQLCDNALALACAVVAALCGLAGXXXXXXXXXXXXXXXXXASFGVLMGYNLAAVAVSVVILMSRTFDHLNE 666
            MNPVDDNLQDEFDFEAGAPYPPKPSADSASTTYRDAFFAVIFALHLAVILALAIFKGIPAVAQGGIDQVDVDPAGGSETPVNDGDNPIPLVLSLGVVMVLGAFLSTVWVKVLVSHGESVVRCTILSTVAWFVLSAVAAALLGQSGGAVALLVLAGIAYWYYVLINSHIEFAGKNLKVACSAVLAMPGTVTVAVTLLTVQALWCMIWGLAMXXXXXXXXXXMLGVATNFSAPITAADGTVYDADDCTTYETQRPNPTFSAACTGYYGGGTCFKCVCGGATVYDDAECRSERVSAGVYALMLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIWGCGVIANISHCTTAGAVAAWWFAGRNGPAADASSPVTASLRRACTTXXXXXXXXXXXXXXXXXXXXXXXXLRRSRRGMGALWAAAAECLAHAAERVVRVFSRYALVHAAVYGTTLPVAGSEVEVESNLXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVXXXXXXXXXXXXXXXXXXXXXXXXXVEVESNLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXMCELVLAGAACLTAAHGRRAHRQSSPKVWALFKRRGWSAIVNDQLCDNALALACAVVAALCGLAGXXXXXXXXXXXXXXXXXASFGVLMGYNLAAVAVSVVILMSRTFDHLNE
Sbjct:    1 MNPVDDNLQDEFDFEAGAPYPPKPSADSASTTYRDAFFAVIFALHLAVILALAIFKGIPAVAQGGIDQVDVDPAGGSETPVNDGDNPIPLVLSLGVVMVLGAFLSTVWVKVLVSHGESVVRCTILSTVAWFVLSAVAAALLGQSGGAVALLVLAGIAYWYYVLINSHIEFAGKNLKVACSAVLAMPGTVTVAVTLLTVQALWCMIWGLAMXXXXXXXXXXMLGVATNFSAPITAADGTVYDADDCTTYETQRPNPTFSAACTGYYGGGTCFKCVCGGATVYDDAECRSERVSAGVYALMLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIWGCGVIANISHCTTAGAVAAWWFAGRNGPAADASSPVTASLRRACTTXXXXXXXXXXXXXXXXXXXXXXXXLRRSRRGMGALWAAAAECLAHAAERVVRVFSRYALVHAAVYGTTLPVAGSEVEVESNLXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVXXXXXXXXXXXXXXXXXXXXXXXXXVEVESNLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXMCELVLAGAACLTAAHGRRAHRQSSPKVWALFKRRGWSAIVNDQLCDNALALACAVVAALCGLAGXXXXXXXXXXXXXXXXXASFGVLMGYNLAAVAVSVVILMSRTFDHLNE 666

[Close]

BLAST of jgi.p|Trimin1|350504 vs. uniprot
Match: A0A7S1CLT9_9STRA (Choline transporter-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLT9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.780e-5
Identity = 41/129 (31.78%), Postives = 54/129 (41.86%), Query Frame = 0

Query:  331 LIWGCGVIANISHCTTAGAVAAWWFAGRNGPAADASSPVTASLRRACTTXXXXXXXXXXXXXXXXXXXXXXXXLR---RSRRGMGALWAAA-AECLAHAAERVVRVFSRYALVHAAVYGTTLPVAGSEV 455
            L WG  VI NI HCT AG V +WWFAG        + P   +L+R+CTT                             R R G GA +      C+    ER+V  F+++A  +  +YG     AGS V
Sbjct:  299 LFWGQQVIQNIVHCTIAGTVGSWWFAGDT-----VAKPTWGALKRSCTTSLGSIAFGSLIVAIIKTLRALARNAENEARKRGGAGAAFVLCFVRCMLDCLERLVEYFNKWAFCYVGIYGKDFRSAGSAV 422

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350504 vs. uniprot

BLAST of jgi.p|Trimin1|350504 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YM59_9STRA	0.000e+0	100.00	Choline transporter-like protein n=1 Tax=Tribonema...	[more]
A0A7S1CLT9_9STRA	1.780e-5	31.78	Choline transporter-like protein n=1 Tax=Bicosoeci...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007603	Choline transporter-like	PFAM	PF04515	Choline_transpo	coord: 149..447 e-value: 1.3E-30 score: 106.8
IPR007603	Choline transporter-like	PANTHER	PTHR12385	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	coord: 575..654 coord: 25..212
IPR007603	Choline transporter-like	PANTHER	PTHR12385	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	coord: 304..450
None	No IPR available	PANTHER	PTHR12385:SF4	PROTEIN PNS1	coord: 575..654
None	No IPR available	PANTHER	PTHR12385:SF4	PROTEIN PNS1	coord: 304..450
None	No IPR available	PANTHER	PTHR12385:SF4	PROTEIN PNS1	coord: 25..212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_64	contig	Contig_64:728444..737002 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350504	mRNA_10158	Tribonema minus UTEX_B_3156	mRNA	Contig_64 728444..737002 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350504|estExt_Genemark1.C_Ctg_640092 ID=Trimin1|350504|estExt_Genemark1.C_Ctg_640092|Name=jgi.p|Trimin1|350504|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=667bp
MNPVDDNLQDEFDFEAGAPYPPKPSADSASTTYRDAFFAVIFALHLAVIL
ALAIFKGIPAVAQGGIDQVDVDPAGGSETPVNDGDNPIPLVLSLGVVMVL
GAFLSTVWVKVLVSHGESVVRCTILSTVAWFVLSAVAAALLGQSGGAVAL
LVLAGIAYWYYVLINSHIEFAGKNLKVACSAVLAMPGTVTVAVTLLTVQA
LWCMIWGLAMALWCMVWGLAMLGVATNFSAPITAADGTVYDADDCTTYET
QRPNPTFSAACTGYYGGGTCFKCVCGGATVYDDAECRSERVSAGVYALML
LSERVSAGVYALMLLSEHVSAGVYALMLLSLIWGCGVIANISHCTTAGAV
AAWWFAGRNGPAADASSPVTASLRRACTTSLGTVCLAALAAAVARLLAAA
ATRLRRSRRGMGALWAAAAECLAHAAERVVRVFSRYALVHAAVYGTTLPV
AGSEVEVESNLVERVVREFSRYALVHAAVYGTTLPVAGSERVVRVFSRYV
LVHAAVYGTTLPVAGSEVEVESNLVERVVREFSRYALVHAAVYGTPLPVA
GSEMCELVLAGAACLTAAHGRRAHRQSSPKVWALFKRRGWSAIVNDQLCD
NALALACAVVAALCGLAGAAAGALCGMSGLLTALLASFGVLMGYNLAAVA
VSVVILMSRTFDHLNE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007603	Choline_transptr-like