mRNA_10107 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A836CA75_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA75_9STRA) HSP 1 Score: 1189 bits (3076), Expect = 0.000e+0 Identity = 736/736 (100.00%), Postives = 736/736 (100.00%), Query Frame = 1
Query: 1 MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPXXXXXXXXXXXXXXXXXXXXXXPTHAAXXPTPALSAQQTASASLPVLEAAAPXXXPAAACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLAAPAQTGGLAVAXXXXXXXXVQPHRSNGLMGVLPPAATAAALSQCSAAGTLPLAXXXXXXXAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVAAALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALSLQFRAQWRFKRKRGAEAAEXXXXXAGGGLDLINGALPHSGHSPNARSGAADPASTYSSGASTSGSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAWRMRRRLPVDGFGMVPGNGRGWAPPEPEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQVLHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS 2208
MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPXXXXXXXXXXXXXXXXXXXXXXPTHAAXXPTPALSAQQTASASLPVLEAAAPXXXPAAACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLAAPAQTGGLAVAXXXXXXXXVQPHRSNGLMGVLPPAATAAALSQCSAAGTLPLAXXXXXXXAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVAAALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALSLQFRAQWRFKRKRGAEAAEXXXXXAGGGLDLINGALPHSGHSPNARSGAADPASTYSSGASTSGSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAWRMRRRLPVDGFGMVPGNGRGWAPPEPEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQVLHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS
Sbjct: 1 MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPXXXXXXXXXXXXXXXXXXXXXXPTHAAXXPTPALSAQQTASASLPVLEAAAPXXXPAAACALEAPRLVPTSTVEGAPAAVAGPPQEAPPSPLLDRVSQLMAAAQSLAAPAQTGGLAVAXXXXXXXXVQPHRSNGLMGVLPPAATAAALSQCSAAGTLPLAXXXXXXXAAGAPSLLAPVHHCHVRGTLLRLRHAARELLPAEGAGAVAAALDGVEGALTCTPELKDFGENVQAALSAAGGGVWEALQCEFEEAMHALSLQFRAQWRFKRKRGAEAAEXXXXXAGGGLDLINGALPHSGHSPNARSGAADPASTYSSGASTSGSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAWRMRRRLPVDGFGMVPGNGRGWAPPEPEPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNVTLLLGCTSCVPGVVCVTQVLHEDTVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAEAELWDDVTDILQALRKHMTS 736
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A2P6NNA0_9EUKA (Peregrin-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNA0_9EUKA) HSP 1 Score: 87.4 bits (215), Expect = 5.710e-14 Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 1390 DDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRLLVNV 1743
+D C C +G S + + +V CDGC +AVH++CYG+ ++PEG+ W C PC +L +P CALC Q GA KP + +WAHV+CA W P + L ++V
Sbjct: 171 EDVLCSVCGNGDSDETNMIVFCDGCDIAVHQQCYGVSSIPEGE--WLCEPCELKL---------------QPNCALCKQSGGAFKPTT-------EKKWAHVVCALWIPGMGILDLSV 264
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: R1DEX7_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEX7_EMIHU) HSP 1 Score: 76.3 bits (186), Expect = 1.090e-12 Identity = 43/114 (37.72%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 1399 ACC-ACSSGHSHDDDALVGCDGCGVAVHERCYGIQA--VPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRL 1731
ACC C G +D+ ++ CD C +AVH+ CYG A +PEGD PW C C F +KRA + C LC ++ GAMK +WAH+ CA W P+ L
Sbjct: 5 ACCNVCGEGDWEEDNKIIFCDSCDLAVHQVCYGAGARVIPEGDAPWFCDMCKF--SKRAGGSSRRV----EQECILCPEKGGAMKRTT-------DGRWAHITCALWVPNAQFL 105
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A8C4Z4D3_GADMO (Jade family PHD finger 1 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4Z4D3_GADMO) HSP 1 Score: 83.2 bits (204), Expect = 1.110e-12 Identity = 46/112 (41.07%), Postives = 55/112 (49.11%), Query Frame = 1
Query: 1390 DDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 1725
DD C C S D++ +V CD C + VH+ CYGIQ VPEG W C C L+ PRC LC QR GAMKP +WAHV CA W P+V+
Sbjct: 195 DDVVCEVCHSPDGEDNNEMVFCDKCNICVHQACYGIQKVPEGS--WLCRTCALGLS---------------PRCQLCPQRGGAMKPTRSG------TKWAHVSCALWIPEVS 283
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A7J7QJJ8_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QJJ8_9CHLO) HSP 1 Score: 82.8 bits (203), Expect = 2.240e-12 Identity = 46/120 (38.33%), Postives = 55/120 (45.83%), Query Frame = 1
Query: 1366 RPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 1725
+P Q DR CC C S +D D LV CDGCGV VH+ CYGI +PE D W C C + AP+P+C LC G +KP WAH C W P+V
Sbjct: 561 KPIQVRWAGDR-CCVCDSDVDYDCDRLVSCDGCGVTVHQSCYGIPELPEEDDMWLCRACELK-----------EPGAPEPQCCLCPLVGGGLKPTTLP------GLWAHAACMQWIPEVT 662
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A662WMH0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH0_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.860e-12 Identity = 53/141 (37.59%), Postives = 64/141 (45.39%), Query Frame = 1
Query: 1306 FGMVPGNGRGWAPPEP-EPGARPFQDMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 1725
G VP R P P G + E +D +C C S+DDD +V CDGC VAVH+ CYGI+ VP G W C C A AS +PRC LC R GA K A +W HV C W P++
Sbjct: 1374 LGPVPAAPRDETPQLPAHVGRKESNAEEAEDESCSICRESESYDDDPIVFCDGCSVAVHQFCYGIRVVPSGK--WFCEVCAEASAGAGASRSS------QPRCHLCPLRGGAFKRTACG-------RWVHVQCFLWIPELE 1499
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A8J5XAH8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAH8_DIALT) HSP 1 Score: 80.9 bits (198), Expect = 4.220e-12 Identity = 51/138 (36.96%), Postives = 64/138 (46.38%), Query Frame = 1
Query: 1402 CCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHG--WGGKAQWAHVLCAWWDPDVN-------------RLLVNVTLLLGCTSC 1770
CC C SG S +D+ +V C GC +AVH+ CY + +VPEGD W C C A+ A + RCA+C GA K R G WGG W HVLCA W P + +L+ L L C C
Sbjct: 317 CCVCGSGESEEDNLIVFCAGCQLAVHQVCYAVASVPEGD--WLCDRCALGPAEAA-----------RVRCAVCPSARGAFK---RTEGGRWGG---WMHVLCAQWIPGLGFRKADTLEAAAGVDVLLPARLKLSCALC 435
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A7S0DPL2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DPL2_9EUKA) HSP 1 Score: 80.9 bits (198), Expect = 5.180e-12 Identity = 45/118 (38.14%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 1378 DMELDDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVNRL 1731
D ELDDR C C S + D+D ++ CDGC VAVH+ CYG+ +PEG+ W C C +LA +C LCC + GA K K +W H CA+W P+ L
Sbjct: 83 DDELDDR-CNICFSAEADDEDLIIYCDGCDVAVHQLCYGVPKIPEGE--WLCRKCEAKLADSDV------------KCFLCCTKGGAFKKDL-------KGRWVHCACAYWLPETYFL 178
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: UPI000719DA46 (protein Jade-1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DA46) HSP 1 Score: 81.3 bits (199), Expect = 5.570e-12 Identity = 43/112 (38.39%), Postives = 54/112 (48.21%), Query Frame = 1
Query: 1390 DDRACCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLAKRAASXXXXXXXAPKPRCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDPDVN 1725
DD C C S + + +V CDGC +AVH+ CYGIQ +P GD W C C + +P+C C QR GAMKP +WAHV CA W P+V
Sbjct: 211 DDTICTVCRSPDYEEGNEMVFCDGCDIAVHQACYGIQVIPPGD--WLCRCCALGI---------------RPQCMFCPQRGGAMKPTKSG------TKWAHVSCALWIPEVR 299
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Match: A0A4D9CXG7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXG7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 5.760e-12 Identity = 84/269 (31.23%), Postives = 111/269 (41.26%), Query Frame = 1
Query: 1402 CCACSSGHSHDDDALVGCDGCGVAVHERCYGIQAVPEGDLPWCCAPCTFQLA---KRAASXXXXXXXAPKP---------RCALCCQRFGAMKPLARAHGWGGKAQWAHVLCAWWDP-----DVNRLLVNVTLLLGCTSCVPGVVCVTQVLHED---TVVEPMVFNKPPAPARTTMCFDQRGCLRAAAPFDIQIYETYCAAHQHCRADAGAVVAALRRACVHATPHALLAKNAALVALVEKKLAAPPGDPNAYPDFVAFERHIRAVAAE 2148
C C S +D+A+V CDGC VAVH+RCYG+ A P G W C C ++ A K AA+ AP C C Q GAMK G K W HV+C DP D NRL V L+ P + + H+ TV P K AR C + G + A F + YC H+ R D ++V+ A P + ALV +E+KL+ G AY + AF R + + E
Sbjct: 992 CDVCGRNDSMEDNAMVLCDGCHVAVHQRCYGLPAAPRG--MWFCEKCKWEKANDFKSAAAAPPPEEGAPASITPTSFPPIACHFCGQTSGAMK------GSRDKRLWGHVVCVRHDPEAFFQDPNRLAV---LVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHAR---CAQRHGLVHLDASFGHALPLIYCPDHESRRLDPFSLVSL-------AKPALAGSAGRALVQAMEEKLS---GQGTAYEEVDAFGRDLAGIVEE 1236 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350483 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10107 ID=mRNA_10107|Name=jgi.p|Trimin1|350483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2376bp|location=Sequence derived from alignment at Contig_64:257155..265135+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGTTAGGAGGCAGCCTGCCGCCGCAGTCTCGGGATCTCAGTGCGCAback to top protein sequence of jgi.p|Trimin1|350483 >Trimin1|350483|estExt_Genemark1.C_Ctg_640035 ID=Trimin1|350483|estExt_Genemark1.C_Ctg_640035|Name=jgi.p|Trimin1|350483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=737bp MLLGGSLPPQSRDLSAQDTQPRAAEALPEPAGAARAAAPAAIPAVAVAAAback to top mRNA from alignment at Contig_64:257155..265135+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10107 ID=mRNA_10107|Name=jgi.p|Trimin1|350483|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7981bp|location=Sequence derived from alignment at Contig_64:257155..265135+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_64:257155..265135+ >mRNA_10107 ID=mRNA_10107|Name=jgi.p|Trimin1|350483|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2211bp|location=Sequence derived from alignment at Contig_64:257155..265135+ (Tribonema minus UTEX_B_3156 )back to top |