Trimin1|350473|estExt_Genemark1.C_Ctg_640008 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350473
Unique NameTrimin1|350473|estExt_Genemark1.C_Ctg_640008
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length124
Homology
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A835YN84_9STRA (RNase III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN84_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.330e-82
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MALQRWLGDSFDEGDGAADKEGLQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVLQCAWLVSDKVKADTFEAVLGAVHLDCREAAATAVPSPVARILAKELWD 123
            MALQRWLGDSFDEGDGAADKEGLQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVLQCAWLVSDKVKADTFEAVLGAVHLDCREAAATAVPSPVARILAKELWD
Sbjct:    1 MALQRWLGDSFDEGDGAADKEGLQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVLQCAWLVSDKVKADTFEAVLGAVHLDCREAAATAVPSPVARILAKELWD 123          
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A835ZIJ8_9STRA (RNase III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.710e-37
Identity = 87/156 (55.77%), Postives = 95/156 (60.90%), Query Frame = 0
Query:   17 AADKEGLQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVLQCA---WL--------------------------------------------------VSDKVKADTFEAVLGAVHLDCREAAATAVPSPVARILAK 119
            +AD+EGLQSLVPAAEEALGYEF D+MLLLQALTLKS+VNEVE+ATGDNGA+EWLGD VLQ A   WL                                                   S KV+AD FEAVLGAVHLDCR+AAA AVPSPV RILAK
Sbjct:   54 SADEEGLQSLVPAAEEALGYEFLDQMLLLQALTLKSYVNEVESATGDNGAMEWLGDCVLQHAVSDWLYTSTAATHRQEGRMTERRKAYVDTTACARYAQCLGLPRLLRTGAGASASLTSRKVQADAFEAVLGAVHLDCRDAAAAAVPSPVVRILAK 209          
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A835Z0E4_9STRA (RNase III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.050e-15
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 0
Query:   19 DKEGLQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVLQCA---WL 80
            D + LQ LVPAAE AL Y F++K+LLLQALT +S+ NE  TATGDN ALEWLGDSVLQ A   WL
Sbjct:  384 DVKALQQLVPAAEAALRYTFSNKLLLLQALTHRSYCNENRTATGDNDALEWLGDSVLQHAISDWL 448          
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A7G9WDS0_9FIRM (Ribonuclease 3 n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A7G9WDS0_9FIRM)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-5
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 0
Query:   23 LQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVL 75
            ++ + P  EE LGY F +K LLL ALT  SF NE     G N  LE+LGDSVL
Sbjct:    1 MKDMAPL-EEKLGYTFQNKQLLLNALTHSSFANETHAPGGSNERLEFLGDSVL 52          
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A859DPW1_9FIRM (Ribonuclease 3 n=2 Tax=Oscillospiraceae TaxID=216572 RepID=A0A859DPW1_9FIRM)

HSP 1 Score: 52.0 bits (123), Expect = 2.070e-5
Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 0
Query:   31 EEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVL 75
            E+ LGY F DK LLL ALT  SF NE     G N  LE+LGDS+L
Sbjct:    8 EKNLGYTFQDKQLLLNALTHSSFANETHAPGGSNERLEFLGDSIL 52          
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A533SEV8_9BACT (Ribonuclease 3 n=1 Tax=bacterium TaxID=1869227 RepID=A0A533SEV8_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 8.020e-5
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0
Query:   24 QSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEV-ETATGDNGALEWLGDSVL 75
            + L+   EEAL Y F  + +LL+ALT +SFVNE+ ET + DN  LE+ GD+VL
Sbjct:    6 EELLKGLEEALDYRFTKREVLLEALTHRSFVNELRETDSRDNQRLEFFGDAVL 58          
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Match: A0A355B488_9BACT (Ribonuclease 3 n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A355B488_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 9.310e-5
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   17 AADKEGLQSLVPAAEEALGYEFNDKMLLLQALTLKSFVNEVETATGDNGALEWLGDSVLQ 76
            AA+K  + S +   E+ +G++F DK L++QALT +S+  EV     DN  LE+LGDSVLQ
Sbjct:   38 AAEK--ISSPLSELEQYIGHKFFDKKLIIQALTHRSYSQEVIPPEADNERLEFLGDSVLQ 95          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350473 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YN84_9STRA1.330e-82100.00RNase III domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZIJ8_9STRA3.710e-3755.77RNase III domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z0E4_9STRA1.050e-1567.69RNase III domain-containing protein n=1 Tax=Tribon... [more]
A0A7G9WDS0_9FIRM1.090e-552.83Ribonuclease 3 n=3 Tax=Oscillospiraceae TaxID=2165... [more]
A0A859DPW1_9FIRM2.070e-557.78Ribonuclease 3 n=2 Tax=Oscillospiraceae TaxID=2165... [more]
A0A533SEV8_9BACT8.020e-550.94Ribonuclease 3 n=1 Tax=bacterium TaxID=1869227 Rep... [more]
A0A355B488_9BACT9.310e-546.67Ribonuclease 3 n=1 Tax=Nitrospinae bacterium TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 23..80
e-value: 7.9E-12
score: 47.1
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 28..109
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 27..76
score: 11.364824

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:64548..68648 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350473mRNA_10085Tribonema minus UTEX_B_3156 mRNAContig_64 64337..68648 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350473|estExt_Genemark1.C_Ctg_640008 ID=Trimin1|350473|estExt_Genemark1.C_Ctg_640008|Name=jgi.p|Trimin1|350473|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
MALQRWLGDSFDEGDGAADKEGLQSLVPAAEEALGYEFNDKMLLLQALTL
KSFVNEVETATGDNGALEWLGDSVLQCAWLVSDKVKADTFEAVLGAVHLD
CREAAATAVPSPVARILAKELWD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036389RNase_III_sf
IPR000999RNase_III_dom