mRNA_10097 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|82612
Unique Name	mRNA_10097
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A835YMA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA0_9STRA)

HSP 1 Score: 545 bits (1405), Expect = 3.200e-193
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 2

Query:  131 MVQGKKGSGSGSAKAKGKEPAKGARSSVRKGKKPDNYNPSDPPKKPAAPRESKSGEHEVYEERKPIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQNGKRMGFKGM 916
            MVQGKKGSGSGSAKAKGKEPAKGARSSVRKGKKPDNYNPSDPPKKPAAPRESKSGEHEVYEERKPIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQNGKRMGFKGM
Sbjct:    1 MVQGKKGSGSGSAKAKGKEPAKGARSSVRKGKKPDNYNPSDPPKKPAAPRESKSGEHEVYEERKPIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQNGKRMGFKGM 262

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A7S1NPW1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NPW1_9EUGL)

HSP 1 Score: 280 bits (715), Expect = 1.010e-88
Identity = 128/199 (64.32%), Postives = 148/199 (74.37%), Query Frame = 2

Query:  305 VYEERKPIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYK-DAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQNGKR 898
            V  +R PIP++N +G+LVF D P+FRPNLTPKEVLQ GSFGGTYFR I SGVTG+ Y  D  KEFP DWFEGLN+  ++TS  Y   VNTY V CG DL  WE  GWI E DP+GWFQWYCR+YLGRRT+DDERQ+GR  RC GP GRWRI+L N + + G  +DD SISPVIRQ LQHWG+ LTE  Y  H K+ G R
Sbjct:   56 VLPKRMPIPKRNANGELVFPDYPEFRPNLTPKEVLQMGSFGGTYFRSIKSGVTGKTYAADQWKEFPADWFEGLNINAKITSQTYREQVNTYKVNCGGDLYMWESSGWINECDPYGWFQWYCRFYLGRRTTDDERQVGRGLRCMGPTGRWRIRLCNMIAQKGKKFDDPSISPVIRQTLQHWGFKLTEPLYLQHCKKYGYR 254

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A7S0ZFX9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFX9_9RHOD)

HSP 1 Score: 277 bits (708), Expect = 3.500e-87
Identity = 124/194 (63.92%), Postives = 149/194 (76.80%), Query Frame = 2

Query:  305 VYEERKPIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQ 886
             + ER+ IP + ++  L+F D P+FRPNLTPKEVLQ GSFGGTY+RPI+S V  Q YKD  KEFP DWFEGLN+  +VTS IY T+VN YGVK G DL  WE KGWI++LDP+GWFQWYCR+YLGRR+ DDERQ+ R  + FGP GR+R QLMNK+  +   ++DKSISPVIRQ LQHWGY LTE D   HKK+
Sbjct:   93 AFPERQEIPNRGKNQSLIFPDHPEFRPNLTPKEVLQLGSFGGTYWRPIYSSVNKQHYKDQWKEFPLDWFEGLNIPLQVTSKIYRTEVNLYGVKSGADLEMWESKGWISDLDPYGWFQWYCRFYLGRRSDDDERQIARGLQVFGPTGRFRTQLMNKIIMSDAKFNDKSISPVIRQTLQHWGYQLTEDDLNKHKKK 286

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: UPI001E1CD374 (uncharacterized protein LOC123508704 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD374)

HSP 1 Score: 271 bits (692), Expect = 1.880e-85
Identity = 120/188 (63.83%), Postives = 142/188 (75.53%), Query Frame = 2

Query:  323 PIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQ 886
            P P +N  GQLVF+ AP+F PNLTPK+VLQ GSFGGTYFRPI SGVTG+ Y+D  KE P DW EGLN+  +V SSIYDT+VN + VKCG  L  WEE GWI + DP+GWF WYCRYY GRR+ DDERQ+GR +RC G KGRWR  L+ KV RA + +DD S+SPV+RQ LQHWGY L + DY L  K+
Sbjct:   46 PPPTRNALGQLVFEGAPEFCPNLTPKQVLQMGSFGGTYFRPIKSGVTGESYRDVWKELPSDWLEGLNIKTQVASSIYDTEVNKFKVKCGGSLEMWEESGWIDKQDPYGWFMWYCRYYQGRRSEDDERQIGRWSRCAGLKGRWRQNLVTKVFRASSKFDDASVSPVVRQTLQHWGYELNKHDYDLGVKR 233

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A8J5CNP2_CHIOP (Uncharacterized protein n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CNP2_CHIOP)

HSP 1 Score: 270 bits (690), Expect = 8.070e-85
Identity = 118/188 (62.77%), Postives = 140/188 (74.47%), Query Frame = 2

Query:  323 PIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQ 886
            P P +N  GQLVF+D PDFRPNL+PK+V+Q GSFGGTYFRPI S VTG+ Y    KE P+DW +GLNV  ++ SSIYDT+VN Y VKCG  L  WE  GWI + DP+GWF WYCRYY GRRT DDERQ+GR +RC G KGRWR  L+ KV RAG S+D  ++SPV+RQ LQHWGY L + DY L  K+
Sbjct:   75 PAPSRNHLGQLVFEDVPDFRPNLSPKQVVQMGSFGGTYFRPIKSSVTGESYNQVWKELPDDWLKGLNVKTQIASSIYDTEVNKYKVKCGGSLDMWESSGWINKQDPYGWFMWYCRYYQGRRTEDDERQIGRWSRCAGLKGRWRQNLITKVYRAGASFDAAAVSPVVRQTLQHWGYELNKHDYDLGVKR 262

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A1W0E686_9MICR (Uncharacterized protein n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E686_9MICR)

HSP 1 Score: 269 bits (687), Expect = 9.300e-85
Identity = 117/187 (62.57%), Postives = 142/187 (75.94%), Query Frame = 2

Query:  335 KNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQNGK 895
            +++ G++VFDD PDF+PNLTPKEVLQ GSFGGTYFRPI S +T + Y+D  KEFP DWFEGLN+ K VTS  Y  DVN Y VKCG  L  WEE GWI + DP+GWFQWYCR+YLGRR  DD RQ+ R  +C GPKGRW+  L+NK  ++  ++DD S+SPVIRQVLQHW YVLTE DY+ + + N K
Sbjct:   51 RDKDGKIVFDDYPDFKPNLTPKEVLQLGSFGGTYFRPIESSITNKSYRDVWKEFPSDWFEGLNITKEVTSLTYYNDVNKYKVKCGGSLQMWEESGWIKKEDPYGWFQWYCRFYLGRRCKDDTRQIERWMKCAGPKGRWKNNLINKCYKSEKNFDDFSVSPVIRQVLQHWAYVLTENDYKKYLESNNK 237

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: UPI001E1DF070 (uncharacterized protein LOC123552860 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF070)

HSP 1 Score: 269 bits (688), Expect = 2.240e-84
Identity = 116/192 (60.42%), Postives = 145/192 (75.52%), Query Frame = 2

Query:  323 PIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQNGKR 898
            P+P++N  GQLVF D P+ RPN+TPKEVLQ GSFGGTYFRPI S VTG+ Y    KE P+DW EGLN+ K+V+SS YD  VNTYGVKCG  L  WEE GWI + DP+GWF WYCR+Y GRRTSDDERQ+GR  RC G  GRWR  L++K  R+G ++D+  +SPV+RQ LQHWGY L + D++ ++K+  K+
Sbjct:   81 PLPKRNAKGQLVFPDHPELRPNMTPKEVLQAGSFGGTYFRPIKSSVTGKSYTQVWKELPKDWLEGLNIGKQVSSSTYDEKVNTYGVKCGGSLEMWEESGWIHKQDPYGWFMWYCRFYQGRRTSDDERQIGRWLRCAGETGRWRNNLISKCVRSGCAFDNPGVSPVVRQTLQHWGYKLNKEDFEAYQKKMKKK 272

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A8B8ADK5_CRAVI (uncharacterized protein LOC111101371 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ADK5_CRAVI)

HSP 1 Score: 270 bits (691), Expect = 4.100e-84
Identity = 121/187 (64.71%), Postives = 143/187 (76.47%), Query Frame = 2

Query:  329 PEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKD-AHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQ 886
            P +N+ G+LVF D P+ RPN+TPKEVLQ GSFGGTYFRPI+S  TG+ YKD A+ E P+DW EGLN+ K+VTSS YD  VNTY VKCG  L  WEE GWI + DP+GWFQWYCR+Y GRR++DD+RQ+GR  RC GP GRW+  L+ K  RAG  YDD +ISPV+RQ LQHWGY LTE DYQ   KQ
Sbjct:  133 PSRNKKGELVFTDCPELRPNMTPKEVLQAGSFGGTYFRPIYSSATGKQYKDEAYLELPKDWTEGLNIKKKVTSSKYDESVNTYKVKCGGSLEMWEESGWIHKQDPYGWFQWYCRFYRGRRSADDDRQVGRWLRCAGPTGRWKNNLIMKCYRAGARYDDPNISPVVRQTLQHWGYRLTEEDYQAKVKQ 319

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: A0A7S3YJK8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YJK8_9EUKA)

HSP 1 Score: 270 bits (689), Expect = 1.150e-83
Identity = 124/202 (61.39%), Postives = 150/202 (74.26%), Query Frame = 2

Query:  290 SGEHEVYEERK-PIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYK--DAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHKKQ 886
            S E  +YE+ K P+P++N+HG+LVF+DAPDFRPNLTPKEVLQ G+FGGTYFR IHS VTG+ +K  ++  EFP+DWFEGL+    V S IYD  VN YGV+CG  L  WE  GWI+  DPFGWFQWYCR+YLGRR+SDDERQL R     GPKGRWR  L+ K  R G  +DD ++SPV+RQ L HWGY LTERD   + K+
Sbjct:   95 SPESSIYEDEKAPLPKRNKHGELVFEDAPDFRPNLTPKEVLQAGAFGGTYFRTIHSSVTGETHKGNESIAEFPKDWFEGLDKKTEVCSPIYDPAVNRYGVRCGGGLDMWETSGWISSQDPFGWFQWYCRFYLGRRSSDDERQLKRGMGVIGPKGRWRNNLIAKCARQGKPFDDYTVSPVVRQALLHWGYHLTERDANAYVKK 296

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BLAST of jgi.p|Trimin1|82612 vs. uniprot
Match: UPI001C0859F1 (uncharacterized protein zgc:113208 isoform X1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C0859F1)

HSP 1 Score: 267 bits (683), Expect = 2.050e-83
Identity = 116/178 (65.17%), Postives = 136/178 (76.40%), Query Frame = 2

Query:  335 KNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGGTYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGVKCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCFGPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDY 868
            KN+ GQLVF D P+FRPN+TPKEVLQ GSFGGTYFRPI+S VT Q+YKD  KE PEDW EGLN++K+V S  Y T VNTY VKCG  L  WE  GWI   DP+GWFQWYCR+Y GRRT DDERQ+ R A+C G KGRWR  L+ K+ R+G  YD+ ++SPV+RQ LQHWGY L + DY
Sbjct:  103 KNEKGQLVFKDFPEFRPNMTPKEVLQAGSFGGTYFRPIYSSVTKQNYKDVFKELPEDWLEGLNISKQVASPTYRTSVNTYEVKCGGSLEMWESSGWIVSQDPYGWFQWYCRFYQGRRTKDDERQISRWAKCAGVKGRWRNNLITKIVRSGCGYDNHTVSPVVRQTLQHWGYRLCQEDY 280

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|82612 vs. uniprot

BLAST of jgi.p|Trimin1|82612 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YMA0_9STRA	3.200e-193	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1NPW1_9EUGL	1.010e-88	64.32	Hypothetical protein n=1 Tax=Eutreptiella gymnasti...	[more]
A0A7S0ZFX9_9RHOD	3.500e-87	63.92	Hypothetical protein (Fragment) n=1 Tax=Timspurcki...	[more]
UPI001E1CD374	1.880e-85	63.83	uncharacterized protein LOC123508704 n=1 Tax=Portu...	[more]
A0A8J5CNP2_CHIOP	8.070e-85	62.77	Uncharacterized protein n=1 Tax=Chionoecetes opili...	[more]
A0A1W0E686_9MICR	9.300e-85	62.57	Uncharacterized protein n=1 Tax=Enterocytozoon hep...	[more]
UPI001E1DF070	2.240e-84	60.42	uncharacterized protein LOC123552860 n=1 Tax=Merce...	[more]
A0A8B8ADK5_CRAVI	4.100e-84	64.71	uncharacterized protein LOC111101371 n=2 Tax=Crass...	[more]
A0A7S3YJK8_9EUKA	1.150e-83	61.39	Hypothetical protein n=1 Tax=Lotharella globosa Ta...	[more]
UPI001C0859F1	2.050e-83	65.17	uncharacterized protein zgc:113208 isoform X1 n=2 ...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_64	contig	Contig_64:171417..174814 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|82612\|CE82611_79
Max annot lvl	33208\|Metazoa
EggNOG OGs	2AUXR@1\|root,2RZV2@2759\|Eukaryota,39BV2@33154\|Opisthokonta,3BKHA@33208\|Metazoa
Evalue	2.04e-86
Seed ortholog	45351.EDO46670
Hectar predicted targeting category	other localisation
TranscriptId	82934
Track	FilteredModels1
ProteinId	82612

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|82612	gene_10097	Tribonema minus UTEX_B_3156	gene	Contig_64 171417..174814 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|82612	Trimin1\|82612\|CE82611_79	Tribonema minus UTEX_B_3156	polypeptide	Contig_64 171866..174684 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10097_4	exon_10097_4	Tribonema minus UTEX_B_3156	exon	Contig_64 171417..172040 -
exon_10097_3	exon_10097_3	Tribonema minus UTEX_B_3156	exon	Contig_64 172941..173049 -
exon_10097_2	exon_10097_2	Tribonema minus UTEX_B_3156	exon	Contig_64 173563..173840 -
exon_10097_1	exon_10097_1	Tribonema minus UTEX_B_3156	exon	Contig_64 174458..174814 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10097	UTR3_10097	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_64 171417..171865 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10097	CDS_10097	Tribonema minus UTEX_B_3156	CDS	Contig_64 174458..174684 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10097	UTR5_10097	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_64 174685..174814 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_64:171417..174814-
coding sequence from alignment at Contig_64:171417..174814-

spliced messenger RNA

>mRNA_10097 ID=mRNA_10097|Name=jgi.p|Trimin1|82612|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1368bp|location=Sequence derived from alignment at Contig_64:171417..174814- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAGAGCGCTAGCACAAACCTGAGGCGTATCGCAGCTATAGCGCTTGTGA
GCCTTTGCACGGCCTTGGTAGCGCAGGCGTGGGCCAAACCTCCCTTTCGC
TCGTCAGTTGCCAGGCTTGGCAGTTTGCAGATGGTGCAAGGGAAGAAAGG
CAGTGGCAGTGGCAGTGCCAAGGCCAAAGGCAAGGAGCCTGCCAAAGGCG
CACGATCGTCTGTGAGAAAGGGCAAGAAACCCGACAACTACAATCCCAGC
GATCCGCCGAAGAAGCCTGCTGCCCCTCGGGAATCGAAGTCTGGCGAGCA
CGAGGTTTACGAAGAAAGGAAGCCCATCCCCGAAAAGAATCAGCATGGGC
AGCTAGTCTTCGATGACGCCCCCGACTTCCGCCCCAATCTCACCCCCAAA
GAGGTACTGCAACGCGGCAGCTTCGGTGGCACCTACTTCCGCCCCATACA
CAGCGGCGTCACCGGCCAAGACTACAAGGACGCGCACAAGGAGTTTCCGG
AAGACTGGTTTGAGGGGCTCAATGTAGCCAAGCGAGTTACATCGTCTATT
TACGACACTGACGTCAACACGTATGGGGTCAAGTGCGGGACGGACCTGTC
TGACTGGGAGGAGAAGGGCTGGATCACTGAGCTGGACCCCTTTGGCTGGT
TCCAGTGGTACTGCCGCTATTACCTTGGGAGGCGCACATCTGACGATGAG
CGGCAATTGGGCCGTGCTGCGCGCTGCTTCGGGCCAAAGGGCAGGTGGCG
CATCCAGCTCATGAACAAGGTGGGCCGTGCGGGCACGTCCTACGACGACA
AGAGCATCAGTCCCGTGATCCGCCAGGTGCTGCAGCACTGGGGCTACGTC
CTCACCGAGAGGGACTACCAGCTGCACAAGAAGCAGAACGGCAAGAGGAT
GGGGTTCAAGGGCATGTAGGCATGCAGTAAAGTGCCAGCCGGCACGGCAA
TTTTTACCATCTGCTACTGCAATGGATGCGCTGTGATGAGGCAGGGCTCG
GAAGCAGGTTTCCACCTTACCTTTGCTGAGCAATGGTAACTGCCAAGTCC
ACTGGTGGCACACAATCACGGTCGCCGTGCGTTCTTTGGAGTTGGTCCGC
ATGCGTGTGCCCTCCAACTGCGAAAGCTCAAGGGCAGCTGCAGCTACATG
AAGGTTTATGCGGTGGTCGGAGAGAAGGCAGCCATACTCACCTGCCGCCA
TCGATCGACTGGCTTGTTGACTGTGGTTGTCAGGCCGGTATGCGGCGCCA
CAGTGATTTACATGTCAAATCTAGCCTTGTACAGCTGCAAACACATGGCA
GTAGACTACACCGTTCGGCGGTGACCACTTCTAAATGCACGTACCCCATG
CAAACCCATGTACAGCTG

protein sequence of jgi.p|Trimin1|82612

>Trimin1|82612|CE82611_79 ID=Trimin1|82612|CE82611_79|Name=jgi.p|Trimin1|82612|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp
MVQGKKGSGSGSAKAKGKEPAKGARSSVRKGKKPDNYNPSDPPKKPAAPR
ESKSGEHEVYEERKPIPEKNQHGQLVFDDAPDFRPNLTPKEVLQRGSFGG
TYFRPIHSGVTGQDYKDAHKEFPEDWFEGLNVAKRVTSSIYDTDVNTYGV
KCGTDLSDWEEKGWITELDPFGWFQWYCRYYLGRRTSDDERQLGRAARCF
GPKGRWRIQLMNKVGRAGTSYDDKSISPVIRQVLQHWGYVLTERDYQLHK
KQNGKRMGFKGM*

mRNA from alignment at Contig_64:171417..174814-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10097 ID=mRNA_10097|Name=jgi.p|Trimin1|82612|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3398bp|location=Sequence derived from alignment at Contig_64:171417..174814- (Tribonema minus UTEX_B_3156 )
GTAGAGCGCTAGCACAAACCTGAGGCGTATCGCAGCTATAGCGCTTGTGA
GCCTTTGCACGGCCTTGGTAGCGCAGGCGTGGGCCAAACCTCCCTTTCGC
TCGTCAGTTGCCAGGCTTGGCAGTTTGCAGATGGTGCAAGGGAAGAAAGG
CAGTGGCAGTGGCAGTGCCAAGGCCAAAGGCAAGGAGCCTGCCAAAGGCG
CACGATCGTCTGTGAGAAAGGGCAAGAAACCCGACAACTACAATCCCAGC
GATCCGCCGAAGAAGCCTGCTGCCCCTCGGGAATCGAAGTCTGGCGAGCA
CGAGGTTTACGAAGAAAGGAAGCCCATCCCCGAAAAGAATCAGCATGGGC
AGCTAGTGTGAGTGCGTTGTACAGAGTTGCTTGGCGTTGCCTGCTTCTAA
TGAGCATGCTCTGGTCTTTAGAAAGCTGGCAGTTGGTTTGAACTCGGAAT
GTGTTTAGGTTTGTCTCCTTATCATTCTACCTGCCTCCCTTTTGCCAGCT
CAATGCAGCGTGTAGCCGCACAAATGATACTAGTGTGCTATTTGTTGTAG
TCTGCTTTTCGATTCATGTGGCACAGGGCCAGAATGCGTAGTGATGCCTC
TTTGATCGCACACAAGTCAGCTTTCTGTGTTGTTGATGCGTCGTCTGTGC
ACTGTCTGCGCCGGTCCCTACACGTCAGACTACTCGAGAGACGACTTGCT
ACCATTTTGTTAACCCCACAAACCCATCCACTATCAGTACCTGCATGCAT
GCCAGTTTTCCTGAAGCAGACGAGTTGAGGTGGAAGCTTCACCCACACAC
GCCAACGCCTGGGCTCGCATTTCAAATCTACAAGAACACTGCTTCAAGAA
CATAGCCAACGCACCAATAACCTGATGTCAGCTGCTGCTGAACTGCATGC
CCCCTTCGCCCCCCCCCTCCTCCCCCCCTTCCCCACTGCATACCACCCCC
CCCCCCCCCCCTTCCCCTCTGCAGCTTCGATGACGCCCCCGACTTCCGCC
CCAATCTCACCCCCAAAGAGGTACTGCAACGCGGCAGCTTCGGTGGCACC
TACTTCCGCCCCATACACAGCGGCGTCACCGGCCAAGACTACAAGGACGC
GCACAAGGAGTTTCCGGAAGACTGGTTTGAGGGGCTCAATGTAGCCAAGC
GAGTTACATCGTCTATTTACGACACTGACGTCAACACGTATGGGGTCAAG
TGCGGGACGGACCTGTCTGACTGGGAGGAGAAGGGCTGGATCACTGAGCT
GGGTAAGTGTCATCTTGCGTCTGTTGTGAGCTGCCTGTGATGGATTATGT
GGCATACTATTTGTGTGGCTTGCATATATGTACGCGTCTGTCCTGCATAC
TAGCATGCACTCTCGAGCAGCAAGTGATTTATTTGCATGTAACAAGCGTG
CTGCGAAGCGCGCTTTGCGTGCACCGAGTTTGCGCACCACGACTGTTGGT
ATCACTATCGATCATTATCCCTACACCAGTAATCTGGGCACACCTGCTGC
AAACATCAACAATGCCACTGCCACATCAACATAGCATCAGATGCATGCTT
GGTGGTTACTGATGAAGAGTCTCTATCCTGTCCTAGCTGGTGCTACTCGG
GGTCGAATTCTGCACAATGCAGGCTGCCACATATCTGTTCCGGTCACTAT
CACCGACTGTTTTACCAGTTCATTCTAGTTTTGCAGTCTATGTGTGCTTT
ATGGTTGCCCAGGACTCGCGGTCGTCACACTTACTTTGATTATCGTGCGT
CCTGTGTTGCAACAGACCCCTTTGGCTGGTTCCAGTGGTACTGCCGCTAT
TACCTTGGGAGGCGCACATCTGACGATGAGCGGCAATTGGGCCGTGCTGC
GCGCTGCTTCGGGCCAAAGGGCAGGCAAGTCACTTTCACACAACTTGAAG
TCCTTGATACGTGTGATGTATGTGCGGTACGTATTCACACAGTACGTCAA
GTTGCAGCTCCTCATGTGTACTTGTGATGATGAATGTGCAGCATGTGTTG
ATATTGTTCGTGTCTAGGTGTAGCTCCTTATGTGCAACTGGCGTGTATGG
AGCTGCTTGGGGCCGAAGGGTAGGCAAGCCACCTCTACACATATTCATTA
CTTGTGATGATGTGCAGTATGTGTTGCAACTGAATGCCGTGCTGCGCGTT
GCTTCGGGTCAAAGGGCAGGCAAGTGCCCCTCGGGAGCAGCGGCTCAGGA
GGCCCTGTTTGATTCTCATCCGTAGGTAGCTTTGTGAGAGTTTGTGTATT
CATGCTTGAGATATCCCAGTGGGGAAAGCGTGCACAAGCTCAGTAGGAGC
ATTCGTGTTGGATACGATGAACGGCAGCTGGGTCGTGCTGCGCGCTGCTT
ATGCCTAAGGGCAGGCAAGTCACCTCTACATGTACTTCAATAATTGGAGT
GTATGTGCAGTACGTTTTCAAACAGTACGTCAAGATTACAGCTCCTTGTG
TGCAACTGGCGTGTATGGAACTGGGGGCACACCTGAGCTGTGCTGTGCCG
TGAGGTGCTGCGGGGCTGGGGGCGAAGGAGGCGCTGCTAGAGGTGACAAG
TAAGTAGATGATGCTCCGTGCAGATGACACTGCTCGGCTACTGCTCCTGG
CATGACAAGGGACAGCTGCACATCCGCTGCGTTGCTTTAGGTGTTGCGTC
ACGGTGATGCTTCGCAGGTGGCGCATACAGCTCATGAACAGGGTACCTGG
AAGTATGTACGCACTTGTCACGTTATTTTATGTTTTTTTTCACGTGAGGT
GCGTTCAATGGTGACGCTCTGCAGGTGGCGCATCCAGCTCATGAACAAGG
TGGGCCGTGCGGGCACGTCCTACGACGACAAGAGCATCAGTCCCGTGATC
CGCCAGGTGCTGCAGCACTGGGGCTACGTCCTCACCGAGAGGGACTACCA
GCTGCACAAGAAGCAGAACGGCAAGAGGATGGGGTTCAAGGGCATGTAGG
CATGCAGTAAAGTGCCAGCCGGCACGGCAATTTTTACCATCTGCTACTGC
AATGGATGCGCTGTGATGAGGCAGGGCTCGGAAGCAGGTTTCCACCTTAC
CTTTGCTGAGCAATGGTAACTGCCAAGTCCACTGGTGGCACACAATCACG
GTCGCCGTGCGTTCTTTGGAGTTGGTCCGCATGCGTGTGCCCTCCAACTG
CGAAAGCTCAAGGGCAGCTGCAGCTACATGAAGGTTTATGCGGTGGTCGG
AGAGAAGGCAGCCATACTCACCTGCCGCCATCGATCGACTGGCTTGTTGA
CTGTGGTTGTCAGGCCGGTATGCGGCGCCACAGTGATTTACATGTCAAAT
CTAGCCTTGTACAGCTGCAAACACATGGCAGTAGACTACACCGTTCGGCG
GTGACCACTTCTAAATGCACGTACCCCATGCAAACCCATGTACAGCTG

Coding sequence (CDS) from alignment at Contig_64:171417..174814-

>mRNA_10097 ID=mRNA_10097|Name=jgi.p|Trimin1|82612|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_64:171417..174814- (Tribonema minus UTEX_B_3156 )
ATGGTGCAAGGGAAGAAAGGCAGTGGCAGTGGCAGTGCCAAGGCCAAAGG
CAAGGAGCCTGCCAAAGGCGCACGATCGTCTGTGAGAAAGGGCAAGAAAC
CCGACAACTACAATCCCAGCGATCCGCCGAAGAAGCCTGCTGCCCCTCGG
GAATCGAAGTCTGGCGAGCACGAGGTTTACGAAGAAAGGAAGCCCATCCC
CGAAAAGAATCAGCATGGGCAGCTAGTCTTCGATGACGCCCCCGACTTCC
GCCCCAATCTCACCCCCAAAGAGGTACTGCAACGCGGCAGCTTCGGTGGC
ACCTACTTCCGCCCCATACACAGCGGCGTCACCGGCCAAGACTACAAGGA
CGCGCACAAGGAGTTTCCGGAAGACTGGTTTGAGGGGCTCAATGTAGCCA
AGCGAGTTACATCGTCTATTTACGACACTGACGTCAACACGTATGGGGTC
AAGTGCGGGACGGACCTGTCTGACTGGGAGGAGAAGGGCTGGATCACTGA
GCTGGACCCCTTTGGCTGGTTCCAGTGGTACTGCCGCTATTACCTTGGGA
GGCGCACATCTGACGATGAGCGGCAATTGGGCCGTGCTGCGCGCTGCTTC
GGGCCAAAGGGCAGGTGGCGCATCCAGCTCATGAACAAGGTGGGCCGTGC
GGGCACGTCCTACGACGACAAGAGCATCAGTCCCGTGATCCGCCAGGTGC
TGCAGCACTGGGGCTACGTCCTCACCGAGAGGGACTACCAGCTGCACAAG
AAGCAGAACGGCAAGAGGATGGGGTTCAAGGGCATGTAG