mRNA_10310 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350459
Unique NamemRNA_10310
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA)

HSP 1 Score: 543 bits (1398), Expect = 1.180e-191
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1
Query:    1 MAAATRPLAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            MAAATRPLAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY
Sbjct:    1 MAAATRPLAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 263 bits (671), Expect = 6.980e-81
Identity = 140/270 (51.85%), Postives = 187/270 (69.26%), Query Frame = 1
Query:   31 KIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTL-TFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            KI +VTGSTDGIGRHT+ KLA  GA V+VHGRN  R  + V+ +K  + N+++   +AD+S  + + TL+  + +  S +D L++NAG+FE   +TT DG E+ FA NV APFV T  LLP+L+    +R+I VSS+SQG      + QFE+ G   + +H SYSLSKLCDAML+ E   RF S    T NTLDPGTVNTKML AGWGMCGI V RAN+++ LATS +++GV+GKYF S RE+RA+   YDP AR++LW+Y  + +G  Y
Sbjct:   61 KIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGVFEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRPGSRLIIVSSISQGSRIDFENLQFEKGG---YDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTRANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A7S1HEF3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEF3_HEMAN)

HSP 1 Score: 261 bits (667), Expect = 1.730e-80
Identity = 137/271 (50.55%), Postives = 187/271 (69.00%), Query Frame = 1
Query:   31 KIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERF--ASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            KIALVTGSTDGIG+HTATKLA DG  VL+HGR+Q+R+   V+ +K ++   ++   LAD ++L  +R LS  +H     +D+L++NAG+F    + T DG E+ F  NVLAPF+ T L+L L++ S   ++I VSS+SQ YA    + Q ++     FSDH SYSLSKLC+AM ++E  ER   A P +T NTLDPGTVNTKML+AGWGMCGI ++RAN Q+TLAT  +L G +G+YF+  R T+A+P CYD   R++LW     ++G DY
Sbjct:   46 KIALVTGSTDGIGQHTATKLAQDGFKVLIHGRSQKRIDATVQRIKDKAPGCELDTFLADFASLEDVRKLSKELHAKCPRIDLLINNAGVFSQSMQKTVDGNEMTFQVNVLAPFLLTSLVLDLVKKSEKGKIIIVSSISQSYALDFDNLQMQK----GFSDHSSYSLSKLCNAMHAIELAERLKGALPGVTVNTLDPGTVNTKMLEAGWGMCGIDLSRANYQHTLATDPSLDGETGQYFVGGRNTKASPPCYDTEQRQRLWKIMTDLTGADY 312          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA)

HSP 1 Score: 233 bits (594), Expect = 5.060e-69
Identity = 131/279 (46.95%), Postives = 185/279 (66.31%), Query Frame = 1
Query:   28 GKIALVTGSTDGIGRHTATKLAT---DG-ATVLVHGRNQERLAKAVEGVKKQSSND-----QVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            GK+ LVTGSTDGIGRHT  +LA    DG +TV+VHGR+  R A AV+ V+++S +      +V  I+ADIST+ G+ +L+         LD L++NAG+FE   + TED  E+ FA NV+AP++ T LLL L+     +R+I VSS+SQGY     + QF+  G   +SDH +YSLSKL   M S+E  ER  SP LT N+LDPGTVNTKML AGWG CGI V+RA++++ LATS+ ++G++G+YF+   ++ A+ A YD   R +L++    ++G  Y
Sbjct:   81 GKVYLVTGSTDGIGRHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGVFEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLPHKGSRIINVSSISQGYDVNFDNLQFQNGG---YSDHAAYSLSKLLMVMYSLESAERIGSPDLTINSLDPGTVNTKMLYAGWGACGIDVSRADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A7S0EFX6_9CRYP (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0EFX6_9CRYP)

HSP 1 Score: 231 bits (588), Expect = 1.290e-68
Identity = 125/268 (46.64%), Postives = 170/268 (63.43%), Query Frame = 1
Query:   31 KIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFAS--PTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSG 828
            K+ALVTGSTDGIGRHTA KLA +G  V++HGRN +R+   +  +K +  N ++    AD + L  +R L   +      +D+L++NAG++E   + T DG E+ F  NVLA F+ T LL+  +  +   R+I  SS+SQG +    +   E+     FS H SYSLSKLC+AM ++E  ER     P +T NTLDPGTVNTKML AGWGMCGI V RAN+Q+ LAT  +LKG SG YF+  RET+A+  CYD   R +LW    +++G
Sbjct:   51 KVALVTGSTDGIGRHTALKLAQEGYDVIIHGRNPKRIDDTLSFIKSKCPNARLESFQADFAKLDDVRKLGNDISTKYKCIDVLINNAGVYEERMQKTADGFEMTFQVNVLAGFLLTSLLMDTVAKAEEPRIIITSSISQGSSIDFDNLNMEK----GFSSHGSYSLSKLCNAMHAIELAERMKKRHPHITVNTLDPGTVNTKMLLAGWGMCGIDVERANNQFNLATDTSLKGKSGLYFVGGRETKASSPCYDKSQRLKLWKKMEEMTG 314          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: UPI001BB1DC6C (retinol dehydrogenase 13-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DC6C)

HSP 1 Score: 226 bits (576), Expect = 1.650e-67
Identity = 117/270 (43.33%), Postives = 174/270 (64.44%), Query Frame = 1
Query:   28 GKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            G+I LVTG+T+GIG+HTA KLA  GATVLVHGR   ++   V  +KK + N+ + G +AD++ LA +R LS  +H     +D+L++NAG+FE  R+ + DG E+ FA NVLAPF+ T L+  LL+A   +R+I VSS+SQ     L + Q + + G     H++Y  SK+C+ M +++  ERF    +T N LDPGTVNT+ML   WG  GI V  A+++Y L+T    + V+G+YF+  R+TRA+   YD   R++LW++   ++G  Y
Sbjct:    3 GRIFLVTGATNGIGQHTALKLAKTGATVLVHGRAPAKVDATVADIKKVTGNENIKGYIADLAHLASIRRLSDELHASYKHIDVLINNAGVFEEVRKESNDGYEMTFAVNVLAPFLLTSLIQDLLKAGTKSRIINVSSISQATFLDLDNFQIKDNYGDG---HKAYEQSKICEIMFTIDMAERFHKDGITVNCLDPGTVNTRMLLKSWGPVGIPVEEADNEYHLSTDAKYENVTGEYFVGMRKTRASTVAYDKKLREKLWNHLVDITGAQY 269          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A7M7HP92_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HP92_STRPU)

HSP 1 Score: 224 bits (570), Expect = 1.290e-66
Identity = 118/270 (43.70%), Postives = 172/270 (63.70%), Query Frame = 1
Query:   28 GKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            G+I LVTG+T+GIG+HTA +LA  GATVLVHGR   R+   V  +KK + N+ + G +AD++ LA +R LS  +H     +D+L++NAG++E  R+ + DG EL FA NV+APF+ T LLL LL+A   +R++ VSS+SQ     L + Q + D G      ++Y  SKLCD M +++  ERF    +T N LDPGTVNT+ML   WG  GI  + A++++ LAT    + V+G+YF+  R+TRA+   YD   R +LW +   ++G  Y
Sbjct:    3 GRIFLVTGATNGIGQHTALQLAKTGATVLVHGRALARVEATVADIKKATGNENIKGYIADLACLANIRRLSDELHASQKHIDVLINNAGVYEKKRQESNDGYELTFAVNVMAPFLLTSLLLDLLKAGNKSRIVNVSSISQSSFLDLDNLQLKHDYGKG---DKAYEQSKLCDIMFTIDMAERFRKDGITVNCLDPGTVNTQMLLKVWGAIGIPTDEADNEFHLATDAKFEDVTGEYFVDMRKTRASAVAYDNQLRGKLWKHLVDITGAQY 269          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP)

HSP 1 Score: 225 bits (574), Expect = 2.710e-66
Identity = 127/263 (48.29%), Postives = 166/263 (63.12%), Query Frame = 1
Query:   22 LAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFA--SPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLW 804
            L  K ALVTG+TDGIG HTATKLA  G  VL+HGR+  R+ +A+  ++  +    V    AD S+L  +   ++ V +    LD+L++NAG+F    RTTEDG E+ F  NVLAPF+ T  LLP++  + A RVI VSS+SQ       + Q E+     FS H SYSLSKLC+AM ++E     A  +P ++ NTLDPGTVNTKML AGWG CG+ V  AND++ LAT    +GVSGKYF+  RE +A   CYD  A  +LW
Sbjct:   63 LGQKTALVTGATDGIGLHTATKLANAGYFVLIHGRDPVRIQEALRKIRLSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQMRTTEDGNEMTFQVNVLAPFLLTKALLPIVAKAQAGRVIIVSSISQSSRIDWDNLQMEK----GFSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVADANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELW 321          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 3.960e-65
Identity = 136/279 (48.75%), Postives = 176/279 (63.08%), Query Frame = 1
Query:    4 AAATRPLAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLL-RASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            AA T  LA K+ LVTGSTDGIG+HTA++LA +GATVLVHGR +  + +AVE V       +V GI+AD+S+L G   L   V + T  LD L++NAG+FE+  R ++DG E  FA NVLAP+V TG LL LL +A    RV+ V+S+S  Y+    + QFE+ G   +SDH SYSLSKL D M + E   R A   +T N+LDPGTVNTKML AGWGM GI V  ANDQ+ LATS+++   SG+Y                 A ++LW    ++SGF Y
Sbjct:   42 AAVTGRLADKVYLVTGSTDGIGKHTASRLAEEGATVLVHGRRESAVREAVEHVG--GGKGKVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGG---YSDHASYSLSKLLDIMFNAELARR-APKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSY 314          
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Match: W7U3D7_9STRA (Short-chain dehydrogenase reductase sdr n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3D7_9STRA)

HSP 1 Score: 221 bits (563), Expect = 7.490e-65
Identity = 126/275 (45.82%), Postives = 177/275 (64.36%), Query Frame = 1
Query:   31 KIALVTGSTDGIGRHTATKLA-TDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLD-----ILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 837
            KI +VTGSTDGIG+HTA+ L  T  A +LVHGRN  ++A+ V+ +K  +  D + G++AD+++   +R L+  + +           +L++NAG+FE+ R+ + +G E+ FA NV APF+ TGLLLPLLR    +R+I +SS+SQG +    D Q    G  A++DHR+YSLSKLC AMLSME   RF S        DPGTVNTKML+AGWGM G+ V+ AND+  LA + +L   +G YF+     +AN   YDP +R +LW Y  +V+GF Y
Sbjct:   56 KIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGD-IDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPG--AYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLD--NGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350459 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNH2_9STRA1.180e-191100.00Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6V2U0S1_HETAK6.980e-8151.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1HEF3_HEMAN1.730e-8050.55Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2V5E2_9STRA5.060e-6946.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0EFX6_9CRYP1.290e-6846.64Hypothetical protein n=2 Tax=Geminigeraceae TaxID=... [more]
UPI001BB1DC6C1.650e-6743.33retinol dehydrogenase 13-like n=1 Tax=Lytechinus v... [more]
A0A7M7HP92_STRPU1.290e-6643.70Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
A0A7S0QHA5_9CRYP2.710e-6648.29Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
D8LMR3_ECTSI3.960e-6548.75Oxidoreductase, short chain dehydrogenase/reductas... [more]
W7U3D7_9STRA7.490e-6545.82Short-chain dehydrogenase reductase sdr n=2 Tax=Mo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:567379..572381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350459|estExt_Genemark1.C_Ctg_630065
GOsGO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009987,GO:0033554,GO:0050896,GO:0051716,GO:0071214,GO:0071470,GO:0104004
Descriptionoxidation-reduction process
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
Evalue3.13e-72
Seed ortholog55529.EKX55069
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-02_003350.1
TranscriptId350781
TrackFilteredModels1
ProteinId350459
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350459gene_10310Tribonema minus UTEX_B_3156 geneContig_63 567379..572381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350459Trimin1|350459|estExt_Genemark1.C_Ctg_630065Tribonema minus UTEX_B_3156 polypeptideContig_63 567379..571812 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10310_1exon_10310_1Tribonema minus UTEX_B_3156 exonContig_63 567379..567395 +
exon_10310_2exon_10310_2Tribonema minus UTEX_B_3156 exonContig_63 567516..567684 +
exon_10310_3exon_10310_3Tribonema minus UTEX_B_3156 exonContig_63 569016..569363 +
exon_10310_4exon_10310_4Tribonema minus UTEX_B_3156 exonContig_63 570248..570382 +
exon_10310_5exon_10310_5Tribonema minus UTEX_B_3156 exonContig_63 571642..572381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10310CDS_10310Tribonema minus UTEX_B_3156 CDSContig_63 567379..567395 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10310UTR3_10310Tribonema minus UTEX_B_3156 three_prime_UTRContig_63 571813..572381 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10310 ID=mRNA_10310|Name=jgi.p|Trimin1|350459|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1409bp|location=Sequence derived from alignment at Contig_63:567379..572381+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGCTACCAGACCACTCGCAGGGAAAATCGCTCTGGTAACCGG
CAGCACGGATGGAATAGGGCGGCATACGGCGACAAAGCTGGCGACGGACG
GAGCCACAGTGCTAGTTCATGGACGGAACCAGGAAAGGCTTGCAAAGGCC
GTCGAGGGCGTGAAGAAGCAATCCAGCAACGATCAGGTCCACGGCATACT
GGCAGACATCTCGACGCTGGCGGGCATGCGCACCCTGAGCACTGCTGTGC
ACCAACACACCTCAGTGCTCGACATTCTCGTCTCCAACGCCGGCATCTTC
GAGTCATGCCGCCGCACCACGGAAGACGGCACGGAGCTGGTGTTTGCCAC
CAATGTGCTGGCGCCGTTTGTGACAACGGGGCTGCTGCTGCCGCTGCTGA
GGGCGAGCGCTGCTGCACGCGTTATAACTGTCAGCAGCATGAGCCAGGGG
TACGCGGCCGGTCTGGTGGACCCGCAGTTTGAGAGGGATGGGGGGAGCGC
GTTCAGCGACCACCGCTCGTACAGCCTCAGCAAGCTGTGCGACGCGATGC
TGAGCATGGAGTTCCATGAGCGCTTTGCGTCACCCACGCTGACCTTCAAC
ACGCTCGATCCCGGCACCGTCAACACCAAGATGCTGGACGCAGGGTGGGG
CATGTGTGGCATCGCTGTGAACCGTGCCAACGACCAGTACACGCTCGCCA
CCAGCGAAAATCTCAAGGGGGTGAGCGGCAAGTACTTTATCAGTGCACGG
GAAACACGCGCCAATCCTGCATGCTACGATCCCGTTGCGCGCAAGCAGCT
CTGGGACTACTGCGCCAAAGTCAGCGGCTTTGACTATTAGTGGATTGTTG
GCCACCATCAAGTGTGAGCCAGGCAACCCGTAGCACAACTTGTGCGCGGT
CGCTGCTGAAATCAAGGGGGTATGGCATGCTGAGCTAGGGGAGGTGTCAC
AGGGCGTTGGTGACAGCAATGGTGTGCCTGCTGCTCAACTCAGAAAGGGG
AGGGCAGAGGTTCACAATTAGCTACGGGATGTGTAAAAGGGGTGCTCACA
GCCTGAGGCTAGCTCCAAGCACAAAGGGATGATGACACCACGCAATGGTT
ACACTTCAACCCGTTCTTCAACTACCTGAGCGCTGCTGGGCAGTAATGCC
CCCCCCCTTCCCCTGCCAATGGCGACGGCGACACCAGTATCCTTGCGCCC
TCTCTATGGCTTGTCGAGCCAATATGTTAGACGGTGGTTTGCACGGTTCA
CGCCCGTGTACATTCTCTTGCTGCCAGTTTTTGCGAAGAGGTTCAAAGTG
AGGGGACAAGGCAGGTTACATACTTCTACATACTGTATGCAGGGCACAAA
GGCCGAGCACAAGCCCAACTACGAGTGCATATATGATCACACACTTGTAA
TGAAAAGAC
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protein sequence of jgi.p|Trimin1|350459

>Trimin1|350459|estExt_Genemark1.C_Ctg_630065 ID=Trimin1|350459|estExt_Genemark1.C_Ctg_630065|Name=jgi.p|Trimin1|350459|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp
MAAATRPLAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKA
VEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIF
ESCRRTTEDGTELVFATNVLAPFVTTGLLLPLLRASAAARVITVSSMSQG
YAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFN
TLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISAR
ETRANPACYDPVARKQLWDYCAKVSGFDY*
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mRNA from alignment at Contig_63:567379..572381+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10310 ID=mRNA_10310|Name=jgi.p|Trimin1|350459|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5003bp|location=Sequence derived from alignment at Contig_63:567379..572381+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCTGCTACCAGGTGAGCCGTGCGCCATGCCTGGCTTTGCATTGC GTCAAAAGATACTGGCAGAACTGCAAGTTGCGAGCCTGCGCGTGTAAACT ATAGTGACTGTCTCGATGCTGTTCGTGTCGTGTGCAGACCACTCGCAGGG AAAATCGCTCTGGTAACCGGCAGCACGGATGGAATAGGGCGGCATACGGC GACAAAGCTGGCGACGGACGGAGCCACAGTGCTAGTTCATGGACGGAACC AGGAAAGGCTTGCAAAGGCCGTCGAGGGCGTGAAGAAGCAATCCAGCAAC GATCAGGTGAAACTTCCATCTCATTCGCTCTCATGAACTCTCTTGATGGC AATATCACACAGGTTTCAGAATACAATATTCAATCACAGTGCTTGGCAAC CTCACGTTTACAAGAGGACACAACACGCTACATAGACGCTTAAGTGTCAA GACAACGCCAGCACATAAAAGTCGCACACAGCTGTAGCTCTAAAACACGA TTACACACTAGGCCTGCTGGTGTGACAGGCCCTGTTGTTGATGTCAGGCT TGTCATGCGGTACTTGCAATGGTGAGACAAGGCCTCTCTGGGCCAGCAGA ACTGTGCTGTGCAAGCAGCGGTGCACGACACACCACCAGAACCATGCAAG AGTGATTTCAAAAATGTGTGAGAGCAATGCAGTGACACTCCAACTTTACT GCTTCAACTCTAACCCTAGGGCAACAGGCAATGCAACCACAAAAAAGGTT GTACAGCGGGCTTGCCGGTTCGTCTTGTACTGACTCTTGTTGGCCGTTCC TTAGCAGTTGTCCTGTACGACGCCTGCAAAAGTATGACGCCCACACAAGG TTGGACAGGACAACTGCACAAAGGGCAACTGCTTTGCATCGGGCAACGAA ACCCAGGACAACAGGAACCGGCATGCAGGCGTCGCACAGGACAACTGCTA AGGATCGGGCAACAAAATCCCGTACGAGAGGAACTGACAAGCCCCCCGTA CAACCCTGGAATACTTCCGTTGGAGATGTGAACATGACACAGCATATGCA CCATGGTTGAGACTGCTACTGCTGTAGTGCGGGCAAAGTCTTCACGTCAG CATTGCACGCGCATCTTTCACAATGTTTTTGTCTCAGTCAGACATCCCAA CTCACAGGTATGCGCAGACTATGCACAAACAGCGCTCAGCATCCATCTGC AGCTTCCGGAACTGCTTCACTGATCTTCGGTGGTTAAAACTGCCCTTCTT GTCAGGCCCACACCACATTGGCATACATCTACACCTCCCCCCTCAAAATG AGCACAGTGCTGAGCATCCGTCCTTGACTTGGCAACTGCCGTAACTGCCA CTATTACCACTGACACCCATGTATGCTCTCATAATTCTCTGTATGTGCAG CTCCACGGCACCATGCCCAGCATCCTGTGAAATTATTCAATCTGCGGATT GAACTCTTGCAATTGCCATTCTTGCAACGGCCAATCTTTCACGCTTCACC AACAGGTCCACGGCATACTGGCGACATGTTGACTCCATGCTGACGGGCAT GCGCGCCGTGAGCACTGCCGTCCAATAATGTAACTGCCATCTGTTGTAAC TGCCATTCCTGTAACTGCCATTCCTGTTCGTGCTCAGGTCCACGGCATAC TGGCAGACATCTCGACGCTGGCGGGCATGCGCACCCTGAGCACTGCTGTG CACCAACACACCTCAGTGCTCGACATTCTCGTCTCCAACGCCGGCATCTT CGAGTCATGCCGCCGCACCACGGAAGACGGCACGGAGCTGGTGTTTGCCA CCAATGTGCTGGCGCCGTTTGTGACAACGGGGCTGCTGCTGCCGCTGCTG AGGGCGAGCGCTGCTGCACGCGTTATAACTGTCAGCAGCATGAGCCAGGG GTACGCGGCCGGTCTGGTGGACCCGCAGTTTGAGAGGGATGGGGGGAGCG CGTTCAGCGACCACCGCTCGTACAGCCTCAGCAAGGTGAGTGACTGAGTC AAGTGAGTGAGTGAGTGAGTGAATGAGTGAATGAGTGAACAAGTCAGCAG TTGCGTCAGCGACCACCGCTTATACAGCCTCAGCAAGGTGAGTGAGCGAG TGAGTGAAGTGAGTGAGGAAGTGAGCAAGTGAGAGATTGCTGCGCTGTAA AAAGCAGGTGAGGGGGTGATGGTGCCCTGTGTGCCCTGTTTGGTGTGCGC CCATCAAGTGACACAAGTCCCCATGTGTGCACTGTAATCCTTACATAAAT TCTATCACAATTCTACTGCCCCGGCTCGCGGCCAATGCTTGCATGGATGA AAATTGTCCCTGGATACAGCACAAGTCCATCTCTCGTGAAAGGCTGCACC TGTTGTTACTTGCATAGGTACATATGTACACCCTCTGTTCACTGACTTGT ATTGAGTCGTTGGATTTCATTGCTCACATTGCGCAATGTGCTGAGCTATT ATTCCCGTTGTCGTTGATTCAAACGCCAGTGGCATCGCTCAGCTAATGCT TACAGCTGTACGTACAACGCACTGAGCACTGCTGTCGTTATTGTCCGACT TTGCCTATGATGGCACCTCTCAGCTGTGCGATGCGATGGTGAGCAGGGAG TTCCATGGGCGCTTCACATCGCTGGCATTGCTAGGCTTTGCAATTCAATG TTTCAGCGTTCTCACACTATCCCTAGACTATGCCTAATTCTTCGACCATG ATGGCTCTCTCAGCTGTGCGACGCAATGCTGAGCATGGAGATTCACGAGC GCTTTGCACAGCTGGCGTTGCGAGGCTTTGCAATTCAATATTCACCCACT ATTTTAACCTTAACCCTAATGAATACTTGTCTGACCCAATTCATCCTTGT TTGCAATGGCATCTCTCAGCTGTGCGACGCGATGCTGAGCATGGAGTTCC ATGAGCGCTTTGCGTCACCCACGCTGACCTTCAACACGCTCGATCCCGGC ACCGTCAACACCAAGATGCTGGACGCAGGGTGGGGCATGTGTGGCATCGC TGTGGTAAGCACTCGACCCTACTTGTTACCAGACTTGCTACCAGACCCAA ACCAAACCCTAATATCACGATGCGCGCAGCGGTCAGAACCCAGCCGTTTT AATTGCCATGCGCAACCCAAACTTCAATGGCAACATGCGTGATACAGGGT GGGGCATGTGCGGCAGAGTTGTGGTGACAACTCAACCTAACCCAAATCTA AATGCCAAGATGCGGATTGCATGGTGGGGAATTTGCGCCATGTGAGTGTA GCTGCGATCAGAACTCAATCTAAACGCGACCCAAACTCAAATGCCAAGAT GCTGGAAGCAGGGGGGCGGGGCATGTGCGGCATAATTGTGGTGACAGCTC ACTCTAACTGAAACCTAATTCAGATCTGAATGCCAAGATGCGCGATGGAT GGTGGCGAATGTGTGGGTGGCATGCGAGCAGTGGTTGTAAGAGTTGCACG CATGCATACCTGCCCTGCACGATGCGCGGCATATCAATGTAAACAAGAAA CTTGCTTACATTTCATGGGCTGCCTTGTAACCCTAATCCGCGTTATGCAC CTTGTAAGCTAACCCTGACTCCATGGTCTTGTCTAACCTTTAGCCAAATC ATCAGGCTCTTGTGCCCCAGTTGAGGTGCTGGGTCTATCCTTATTGCTTG TCACAGCACTTTTGCTGGTGGCAATGCATGCCATTTAATGTAAGCAGCTT TCAGTAACAGGAGCAGTTTCAATGGAGCTGAAAAGAGGCTGCAAGTGCCT CTACACCAGATGACAAGGCCGTATGTTTTGCTGCAGTGCAGAGGTGAAAG CCAAACGTAAAACCTAAGTACAACGTCGAATGCTCATACCAATGTTTTCA AGGCAGAGCCGGTTTCCAGGGCTGGTAGGCATCAATCACCCTGCCCATCT ATATATTTGTATGCAGAACCGACCAGGTCACTCTCGCCACGAGCAAACAC TCAGGGAGAGTCACTTGTTTGCTTCACTGATGACGCGCAAAGCGTGCGCT GCTGCTCTGCCGCCTGACAGTGTTCCTGCTTGCACCCACGGTCAGGGTTA CCTAATCCAAAGTTCAGGGTTAGGAGTGATGCAGACCTGTGCCAATGACC AGTACAGTTTGCCACGAGCCAAGTTGTAATACCTCAAGGGATTGCTCAAG TTCATACCTCAGCGCACTTCATTGCTGAACCCTAACCCCCTGCCTCGTGT TAACATGTCAAATGCAGAACCGTGCCAACGAACCCCCTGCCTCGTGTTCA CATGTCAATGCAGAACCGTGCCAACGACCAGTACACGCTCGCCACCAGCG AAAATCTCAAGGGGGTGAGCGGCAAGTACTTTATCAGTGCACGGGAAACA CGCGCCAATCCTGCATGCTACGATCCCGTTGCGCGCAAGCAGCTCTGGGA CTACTGCGCCAAAGTCAGCGGCTTTGACTATTAGTGGATTGTTGGCCACC ATCAAGTGTGAGCCAGGCAACCCGTAGCACAACTTGTGCGCGGTCGCTGC TGAAATCAAGGGGGTATGGCATGCTGAGCTAGGGGAGGTGTCACAGGGCG TTGGTGACAGCAATGGTGTGCCTGCTGCTCAACTCAGAAAGGGGAGGGCA GAGGTTCACAATTAGCTACGGGATGTGTAAAAGGGGTGCTCACAGCCTGA GGCTAGCTCCAAGCACAAAGGGATGATGACACCACGCAATGGTTACACTT CAACCCGTTCTTCAACTACCTGAGCGCTGCTGGGCAGTAATGCCCCCCCC CTTCCCCTGCCAATGGCGACGGCGACACCAGTATCCTTGCGCCCTCTCTA TGGCTTGTCGAGCCAATATGTTAGACGGTGGTTTGCACGGTTCACGCCCG TGTACATTCTCTTGCTGCCAGTTTTTGCGAAGAGGTTCAAAGTGAGGGGA CAAGGCAGGTTACATACTTCTACATACTGTATGCAGGGCACAAAGGCCGA GCACAAGCCCAACTACGAGTGCATATATGATCACACACTTGTAATGAAAA GAC
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Coding sequence (CDS) from alignment at Contig_63:567379..572381+

>mRNA_10310 ID=mRNA_10310|Name=jgi.p|Trimin1|350459|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_63:567379..572381+ (Tribonema minus UTEX_B_3156 )
ATGGCCGCTGCTACCAGACCACTCGCAGGGAAAATCGCTCTGGTAACCGG
CAGCACGGATGGAATAGGGCGGCATACGGCGACAAAGCTGGCGACGGACG
GAGCCACAGTGCTAGTTCATGGACGGAACCAGGAAAGGCTTGCAAAGGCC
GTCGAGGGCGTGAAGAAGCAATCCAGCAACGATCAGGTCCACGGCATACT
GGCAGACATCTCGACGCTGGCGGGCATGCGCACCCTGAGCACTGCTGTGC
ACCAACACACCTCAGTGCTCGACATTCTCGTCTCCAACGCCGGCATCTTC
GAGTCATGCCGCCGCACCACGGAAGACGGCACGGAGCTGGTGTTTGCCAC
CAATGTGCTGGCGCCGTTTGTGACAACGGGGCTGCTGCTGCCGCTGCTGA
GGGCGAGCGCTGCTGCACGCGTTATAACTGTCAGCAGCATGAGCCAGGGG
TACGCGGCCGGTCTGGTGGACCCGCAGTTTGAGAGGGATGGGGGGAGCGC
GTTCAGCGACCACCGCTCGTACAGCCTCAGCAAGCTGTGCGACGCGATGC
TGAGCATGGAGTTCCATGAGCGCTTTGCGTCACCCACGCTGACCTTCAAC
ACGCTCGATCCCGGCACCGTCAACACCAAGATGCTGGACGCAGGGTGGGG
CATGTGTGGCATCGCTGTGAACCGTGCCAACGACCAGTACACGCTCGCCA
CCAGCGAAAATCTCAAGGGGGTGAGCGGCAAGTACTTTATCAGTGCACGG
GAAACACGCGCCAATCCTGCATGCTACGATCCCGTTGCGCGCAAGCAGCT
CTGGGACTACTGCGCCAAAGTCAGCGGCTTTGACTATTAG
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