mRNA_10273 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350438
Unique NamemRNA_10273
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A836CLL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL4_9STRA)

HSP 1 Score: 660 bits (1702), Expect = 3.610e-236
Identity = 366/406 (90.15%), Postives = 371/406 (91.38%), Query Frame = 1 
Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVVNML--------------------GKATARSYQVLYTGFKLMRA---ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT*GGGPLSLRERGPMAAAVTREAAEVWALMR 1149
            MSGESGESAEQATENPVDISDRLERF+NSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGV TTLPIKLTGGQRVSKLHDVLARTAVYVDQKV NML                    GKATARSYQ LYTGFKLMRA   ELIGLGLTELPQGSRTF+SEM VCEVMLAKFEMLVVHQEGVTISDADL AIQGAI SDLDEWTSNLDA+STSLLQHHRLAPPFGSGEALDVPDIPTV+WTNAAR LEVNGDIAARAVAAARKRK+DGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQP GAPANCPYGVCWVWWRHVKEQNP PCNVVPGPCKYRHSDT GGGPLSLRERGPMAAAVTREAAEVW L R
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFINSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVLTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFVSEMAVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIQSDLDEWTSNLDAMSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPAPCNVVPGPCKYRHSDTKGGGPLSLRERGPMAAAVTREAAEVWGLTR 406
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BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A835YJA4_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA4_9STRA)

HSP 1 Score: 609 bits (1571), Expect = 4.670e-218
Identity = 337/364 (92.58%), Postives = 342/364 (93.96%), Query Frame = 1 
Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVYVDQKV--------VNMLGKATARSYQVLYTGFKLMRA---ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 1059
            MSGESGESAEQATENPVDISDRLERFMNSVEQRLGAL+DKIGAMAGSMQDV+AQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQR SKLHDVLARTAVYVDQK             GKATARSYQ LYTGFKLMRA   ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADL AIQGAIHSDLDEWTSNLDALSTSLLQHH+LAPPFGSGEALDVPDIPTV+WTNAAR LEVNGDIAARAVAAARKRK+DGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQP GAPANCPYGVCWVWWRHVKEQNPVP NVVPGPCKYRHSDT
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 364
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BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A836CHX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX2_9STRA)

HSP 1 Score: 392 bits (1008), Expect = 9.670e-134
Identity = 216/230 (93.91%), Postives = 218/230 (94.78%), Query Frame = 1 
Query:  391 GKATARSYQVLYTGFKLMRA-----ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCP--YGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 1059
            GKATARSYQ LYTGFKLMRA     ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADL AIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTV+WTNAAR LEVNGDIAARAVAAARKRK+DGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQP GAPANCP  YG CWVWWRHVKEQNPVPCNVVPGPCKYRHSDT
Sbjct:   51 GKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280
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BLAST of jgi.p|Trimin1|350438 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.500e-97
Identity = 207/340 (60.88%), Postives = 215/340 (63.24%), Query Frame = 1 
Query:  130 MAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVVNMLGKATARSYQVLYTGFKLMRAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWTNAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT*GGGPLSLRERGPMAAAVTREAAEVWALMR 1149
            MAGS+QDVVAQEVQLQVEESSRSTSSEDTRERK LMENEAYR HLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAV          GKATARSYQ LY G KLMRAELIGLGLTELPQGSRTFMS+MEVCEVMLAKFEMLVVHQEGVTISDADL AIQGAIHSDL    +  DALST LLQHHRL PPFGSGEALDVPDIPTV+       L+V                          P+                                          RH+                       GGGPLSL+ERGPMAAAVTR AAEVW L R
Sbjct:    1 MAGSLQDVVAQEVQLQVEESSRSTSSEDTRERKLLMENEAYRCHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAV----------GKATARSYQALYKGVKLMRAELIGLGLTELPQGSRTFMSKMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLTSGPAT-DALSTILLQHHRLPPPFGSGEALDVPDIPTVA------ALQVP-------------------------PL------------------------------------------RHL-----------------------GGGPLSLQERGPMAAAVTRVAAEVWGLTR 233
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350438 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CLL4_9STRA3.610e-23690.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJA4_9STRA4.670e-21892.58Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A836CHX2_9STRA9.670e-13493.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCV7_9STRA1.500e-9760.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:149496..150703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350438|estExt_Genemark1.C_Ctg_630018
Hectar predicted targeting categoryother localisation
TranscriptId350760
TrackFilteredModels1
ProteinId350438
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350438gene_10273Tribonema minus UTEX_B_3156 geneContig_63 149496..150703 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10273_1exon_10273_1Tribonema minus UTEX_B_3156 exonContig_63 149496..149884 +
exon_10273_2exon_10273_2Tribonema minus UTEX_B_3156 exonContig_63 149944..150703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10273CDS_10273Tribonema minus UTEX_B_3156 CDSContig_63 149496..149884 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10273UTR3_10273Tribonema minus UTEX_B_3156 three_prime_UTRContig_63 150617..150703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350438Trimin1|350438|estExt_Genemark1.C_Ctg_630018Tribonema minus UTEX_B_3156 polypeptideContig_63 149496..150616 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10273 ID=mRNA_10273|Name=jgi.p|Trimin1|350438|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1149bp|location=Sequence derived from alignment at Contig_63:149496..150703+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACGGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGGAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTAGTGGCGCAGGAGGTGCAGCTCCAGGTCGAGGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCTACCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGTCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGTGAACATGCTCGGCAAGGCGA
CTGCGAGGTCGTATCAGGTCCTGTATACGGGTTTTAAGCTGATGCGGGCA
GAGCTGATCGGGCTCGGGCTCACGGAGCTTCCGCAGGGCTCGCGGACCTT
CATGTCGGAAATGGAGGTCTGCGAGGTCATGCTCGCAAAGTTTGAGATGC
TGGTGGTACACCAGGAAGGGGTCACGATCTCGGACGCAGATCTGACGGCC
ATCCAGGGGGCCATCCACTCGGACTTGGACGAGTGGACCAGCAACCTGGA
CGCGCTGTCGACGAGTCTGCTCCAGCACCACCGGTTGGCCCCCCCCTTTG
GGAGCGGCGAGGCACTGGACGTGCCGGACATCCCGACGGTGTCGTGGACC
AACGCAGCTCGCACGCTGGAGGTCAACGGGGACATAGCGGCGCGAGCGGT
GGCGGCGGCGCGCAAGCGCAAGTTTGACGGCGCGTTCCGGGGCGGCGGCA
GACCCGTCGGCTCGGGGGGCGGCGGCGCGGGTGCAGGCGGGGGCGCTGGC
GCAGCGGCGGGAGCAGGAGGCACGCGCTCACAGCCGTGGGGAGCGCCGGC
GAACTGCCCTTATGGTGTTTGCTGGGTGTGGTGGAGGCACGTGAAGGAGC
AGAACCCAGTCCCGTGCAACGTCGTCCCAGGGCCCTGCAAGTACCGCCAC
TCCGACACCTAGGGGGGCGGGCCCCTGAGCCTGCGGGAGCGGGGGCCGAT
GGCGGCAGCGGTGACGAGGGAGGCAGCGGAGGTGTGGGCCCTTATGCGG
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protein sequence of jgi.p|Trimin1|350438

>Trimin1|350438|estExt_Genemark1.C_Ctg_630018 ID=Trimin1|350438|estExt_Genemark1.C_Ctg_630018|Name=jgi.p|Trimin1|350438|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=354bp
MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQD
VVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPI
KLTGGQRVSKLHDVLARTAVYVDQKVVNMLGKATARSYQVLYTGFKLMRA
ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLTA
IQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVSWT
NAARTLEVNGDIAARAVAAARKRKFDGAFRGGGRPVGSGGGGAGAGGGAG
AAAGAGGTRSQPWGAPANCPYGVCWVWWRHVKEQNPVPCNVVPGPCKYRH
SDT*
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mRNA from alignment at Contig_63:149496..150703+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10273 ID=mRNA_10273|Name=jgi.p|Trimin1|350438|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1208bp|location=Sequence derived from alignment at Contig_63:149496..150703+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACGGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGGAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTAGTGGCGCAGGAGGTGCAGCTCCAGGTCGAGGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCTACCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGTCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGTGAACATGCTGTGGGACGTCT
CCAACCTGCAGCGATCGCCTTTTCATTCCGCGATCCGGCCACTCGCAGCG
GCAAGGCGACTGCGAGGTCGTATCAGGTCCTGTATACGGGTTTTAAGCTG
ATGCGGGCAGAGCTGATCGGGCTCGGGCTCACGGAGCTTCCGCAGGGCTC
GCGGACCTTCATGTCGGAAATGGAGGTCTGCGAGGTCATGCTCGCAAAGT
TTGAGATGCTGGTGGTACACCAGGAAGGGGTCACGATCTCGGACGCAGAT
CTGACGGCCATCCAGGGGGCCATCCACTCGGACTTGGACGAGTGGACCAG
CAACCTGGACGCGCTGTCGACGAGTCTGCTCCAGCACCACCGGTTGGCCC
CCCCCTTTGGGAGCGGCGAGGCACTGGACGTGCCGGACATCCCGACGGTG
TCGTGGACCAACGCAGCTCGCACGCTGGAGGTCAACGGGGACATAGCGGC
GCGAGCGGTGGCGGCGGCGCGCAAGCGCAAGTTTGACGGCGCGTTCCGGG
GCGGCGGCAGACCCGTCGGCTCGGGGGGCGGCGGCGCGGGTGCAGGCGGG
GGCGCTGGCGCAGCGGCGGGAGCAGGAGGCACGCGCTCACAGCCGTGGGG
AGCGCCGGCGAACTGCCCTTATGGTGTTTGCTGGGTGTGGTGGAGGCACG
TGAAGGAGCAGAACCCAGTCCCGTGCAACGTCGTCCCAGGGCCCTGCAAG
TACCGCCACTCCGACACCTAGGGGGGCGGGCCCCTGAGCCTGCGGGAGCG
GGGGCCGATGGCGGCAGCGGTGACGAGGGAGGCAGCGGAGGTGTGGGCCC
TTATGCGG
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Coding sequence (CDS) from alignment at Contig_63:149496..150703+

>mRNA_10273 ID=mRNA_10273|Name=jgi.p|Trimin1|350438|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1062bp|location=Sequence derived from alignment at Contig_63:149496..150703+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACGGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGGAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTAGTGGCGCAGGAGGTGCAGCTCCAGGTCGAGGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCTACCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGTCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGTGAACATGCTCGGCAAGGCGA
CTGCGAGGTCGTATCAGGTCCTGTATACGGGTTTTAAGCTGATGCGGGCA
GAGCTGATCGGGCTCGGGCTCACGGAGCTTCCGCAGGGCTCGCGGACCTT
CATGTCGGAAATGGAGGTCTGCGAGGTCATGCTCGCAAAGTTTGAGATGC
TGGTGGTACACCAGGAAGGGGTCACGATCTCGGACGCAGATCTGACGGCC
ATCCAGGGGGCCATCCACTCGGACTTGGACGAGTGGACCAGCAACCTGGA
CGCGCTGTCGACGAGTCTGCTCCAGCACCACCGGTTGGCCCCCCCCTTTG
GGAGCGGCGAGGCACTGGACGTGCCGGACATCCCGACGGTGTCGTGGACC
AACGCAGCTCGCACGCTGGAGGTCAACGGGGACATAGCGGCGCGAGCGGT
GGCGGCGGCGCGCAAGCGCAAGTTTGACGGCGCGTTCCGGGGCGGCGGCA
GACCCGTCGGCTCGGGGGGCGGCGGCGCGGGTGCAGGCGGGGGCGCTGGC
GCAGCGGCGGGAGCAGGAGGCACGCGCTCACAGCCGTGGGGAGCGCCGGC
GAACTGCCCTTATGGTGTTTGCTGGGTGTGGTGGAGGCACGTGAAGGAGC
AGAACCCAGTCCCGTGCAACGTCGTCCCAGGGCCCTGCAAGTACCGCCAC
TCCGACACCTAG
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