mRNA_10270 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350435
Unique NamemRNA_10270
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A836CBB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB9_9STRA)

HSP 1 Score: 694 bits (1791), Expect = 3.690e-249
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 1
Query:    1 MEVVISDSADDGKRANGSGXXXXXXXXXXXXXXXXXXXXXXXXXSAAAARRTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG 1200
            MEVVISDSADDGKRANGSGXXXXXXXXXXXXXXXXXXXXXXXXXSAAAARRTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG
Sbjct:    1 MEVVISDSADDGKRANGSGXXXXXXXXXXXXXXXXXXXXXXXXXSAAAARRTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG 400          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A836CA16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA16_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.940e-64
Identity = 137/320 (42.81%), Postives = 191/320 (59.69%), Query Frame = 1
Query:  217 PPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAA 1176
            PP+G R+GKRR  V+   VA+RIKEHP     + GRL+C +C TE AE+KT+V+RH+  +KHI+       +    K R + L ++F  + AKG+SL+D + ++R++TLRML+IS IP+ KL+GPLR ALE   +SLT+SSHM EL+  V  EEM  L +E+AG+ ++VIFDGTT          LAV A         RWWSEFE+L  +LT+E+  ++ S+GS ++A L++  +                                        QATY LEGDGPL+M+ +D+I+ L S R DLLP+M FPAVQ LAA
Sbjct:   28 PPIGARSGKRRPTVNDSNVARRIKEHPGDFRKEEGRLFCIICVTECAEEKTAVNRHVKSSKHITRKAALEHRAIATKERIKTLRQHFNASQAKGSSLSDMESVYRLETLRMLMISGIPISKLDGPLRLALEHNNYSLTDSSHMRELIIVVAGEEMKALCEELAGQHIAVIFDGTTD-----HAEVLAVVA---------RWWSEFELLANILTVEETSQSDSKGSMLSALLRTEKL----------------------------------------QATYQLEGDGPLSMVAHDVIERLSSIRTDLLPDMDFPAVQMLAA 293          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7JYZ8_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JYZ8_PARCT)

HSP 1 Score: 112 bits (281), Expect = 5.910e-24
Identity = 92/312 (29.49%), Postives = 157/312 (50.32%), Query Frame = 1
Query:  271 VAKRIKEHPDVLAADA----GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDT-----VTKSLIPKWRITANQRA-ITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAA 1176
            VA RI+E P     D     G  +C  C+ E++  ++++  HI   KH+S  EK   K    +  + +L  Y  E +  G +L+   ++FR+  +   + + I ++K+    R  LE   + LT+ ++MA+L+P V +EE     +E+ GR++S++FDGTTR+   L++         +++F +D  W   + L++ L L +    +  G  +A  + S    L + DT      T+ L+    I AN  A +  E+     A +PFV+ TY LEGDGPL +  YD I  L++  R     M  P V Q+++
Sbjct:   37 VAVRIQEFPQECFKDTAIGKGAFFCEACREEISVKRSTIINHINTHKHLSGKEKLHQKAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTRLGEALVI---------IVRF-LDSEWKIQQRLLRFLLLAK----SLAGEEVAREIISV---LAREDTGTAPATTRKLLD---IIANSEAKLKIEIAATVDAGEPFVKKTYSLEGDGPLVLEAYDAIIELENCVR----LMHMPNVTQISS 323          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A2B4RQL6_STYPI (Protein sidekick-2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQL6_STYPI)

HSP 1 Score: 104 bits (259), Expect = 8.830e-20
Identity = 93/371 (25.07%), Postives = 156/371 (42.05%), Query Frame = 1
Query:  319 GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRV-------------------LVTLLMTTLAVKADDV---------IQFQID----------------------------------------------------RWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDL-LPNMLFPAVQQLAANATI 1188
            G+ +C  C  ++   KT ++ H+  +KH S  E+   K A  +  ++ L EY  +   KG SL+ A +++ V  +R  + + +PLHK++   R  LE    SLT+S H+++ +  + ++E   +++EI GR +S+IFDGTT V                   L+ LL+ T  +  +++         + F I                                                     RWWS++E+++QV  L     A  +G  I          +  +     SL  ++ IT +             A KPFVQ+TY LEGDG L +  Y +++ L++  R+L  PN    AV +  AN  I
Sbjct: 1731 GQAFCNACCEQIGLKKTLIENHVKSSKHASGKERLEKKEARERDIAKSLKEYDNQFLPKGESLSVALRVYTVKVVRSFMKAGVPLHKIDC-FRELLEEEAFSLTSSRHLSDFIDVIAKDERKKVKEEIEGRDVSIIFDGTTHVAKALNIILRFVTEWKVHQQLIRLLLVTKPMNGEELAHQLLSTLSVDFSIPPSSLLAAARDRASVKNEAKFMKSWVGLFAHSARSRNAFKETTGQFPNSYLETRWWSKYEMMVQVHDLFGDTIAFVKGDQIPEVTARKLQDILNDQQKLASLKVEFAITVD-------------AMKPFVQSTYQLEGDGSLCLQAYQIVRKLEAEMRNLHFPNCC--AVIRNIANGNI 2085          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7HVZ4_PARCT (RNA-directed DNA polymerase from transposon BS n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HVZ4_PARCT)

HSP 1 Score: 85.1 bits (209), Expect = 4.440e-14
Identity = 50/162 (30.86%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  271 VAKRIKEHPDVLAADA----GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
            VA RI+E P     D     G  +C  C+ E++  ++++  HI   KH+S  EK   K    +  + +L  Y  E +  G +L+   ++FR+  +   + + I ++K+    R  LE   + LT+ ++MA+L+P V +EE     +E+ GR++S++FDGTTR
Sbjct:   20 VAVRIQEFPQECFKDTAIGKGAFFCEACREEISVKRSTIINHINTHKHLSGKEKLHQKAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTR 180          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7G7N1_PARCT (RNA-directed DNA polymerase from transposon BS n=6 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G7N1_PARCT)

HSP 1 Score: 85.1 bits (209), Expect = 7.480e-14
Identity = 50/162 (30.86%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  271 VAKRIKEHPDVLAADA----GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
            VA RI+E P     D     G  +C  C+ E++  ++++  HI   KH+S  EK   K    +  + +L  Y  E +  G +L+   ++FR+  +   + + I ++K+    R  LE   + LT+ ++MA+L+P V +EE     +E+ GR++S++FDGTTR
Sbjct:   37 VAVRIQEFPQECFKDTAIGKGAFFCEACREEISVKRSTIINHINTHKHLSGKEKLHQKAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTR 197          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A1X7T065_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T065_AMPQE)

HSP 1 Score: 77.8 bits (190), Expect = 1.330e-11
Identity = 48/158 (30.38%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  277 KRIKEHPDV-LAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRV 747
            +R+KE P+  L    G+L+C  C+ EL    T V  H+   KH    EK   +       ++    Y  + +  G +L++  Q++R   ++  L + +PL+K++   R  LE  G  L     +++L+PF+ ++E+  + QEI  R++SVIF+GTTR+
Sbjct:    6 QRVKEFPNENLTVSGGKLFCNGCREELGLKATVVKLHVKSNKHKLGKEKLQGRNKEEIDIAQAFDTYNQKEHLAGETLSNDLQVYRTKVVKTFLKAGVPLNKVD-LFRDILEEHGLQLAGRRVLSDLVPFICKQEVIKISQEIEEREVSVIFNGTTRI 162          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: UPI00138FABF8 (uncharacterized protein LOC116604706 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FABF8)

HSP 1 Score: 66.6 bits (161), Expect = 3.850e-8
Identity = 79/290 (27.24%), Postives = 130/290 (44.83%), Query Frame = 1
Query:  253 QVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRL---LSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGL 1113
            +VSAKQ  +  K   D++  +   ++C  CK E+   K S+     +  H+    K+  K  LGK    +   L +Y    + KG +L+ + ++FR+  ++  L S   L+++E   R   E  G SL++SS+M +L+PF+L EE  +    + GR++     G  RV+                ++   RWWS +E    VL   ++W   S  S    F +++  KL               +  N   +  E   L    K FV+ATY LEGDG L  I ++ +  L
Sbjct:   68 KVSAKQRVEEFKGE-DLIVRN-NEVYCAACK-EVVSVKMSI-----MKVHVKELNKEKLKK-LGKREEDIVQALHKYDQAHHPKGQTLSTSTRVFRIKVVQAFLKSGTSLNRVEF-FREIFEEAGMSLSSSSNMRQLIPFILEEEYKSTTS-MKGRRVWKNLTG--RVMP---------------RYNSTRWWSLWECAKVVL---EEWAHVS-ASHDEEFAKASWQKLSD------------ALLHNPVQLRVEFAALMELEK-FVKATYTLEGDGALVFIAFEKLDEL 312          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A7S0LT69_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LT69_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 2.870e-6
Identity = 50/173 (28.90%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  238 GKRRMQVSAKQVAKRIKEHP--DVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQ--LFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
            G+R+ + S   +++R++E P    + AD G+L+CR CK  +   K ++  H     H         K+         L E+F   N K    ++     L+R + L   L + +   K++  L G L++   ++T+S +M + +P V   E   L+ EI G+K++VIFDGTTR
Sbjct:   30 GERKTRESLVPLSQRLREFPGQSFIIAD-GKLFCRCCKETIRNHKGTIATHAKGQTHEGKLVAWEKKLGTQNDVKEFLFEHF-RANPKELFASEPMDTLLWRFNVLETFLAAGLEPTKIDD-LAGLLKQ---AVTDSGNMRQFIPKVEGFEFRRLKNEIEGQKVTVIFDGTTR 196          
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7KMY7_PARCT (RNA-directed DNA polymerase from transposon BS (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KMY7_PARCT)

HSP 1 Score: 59.3 bits (142), Expect = 9.450e-6
Identity = 32/110 (29.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  415 EKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
            ++D  +    +  + +L  Y  E +  G +L+   ++FR+  +   + + I ++K+    R  LE   + LT+ ++MA+L+P V +EE     +E+ GR++S++FDGTTR
Sbjct:   23 DEDGEEAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTR 131          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A836CBB9_9STRA3.690e-249100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CA16_9STRA3.940e-6442.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S7JYZ8_PARCT5.910e-2429.49Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A2B4RQL6_STYPI8.830e-2025.07Protein sidekick-2 n=1 Tax=Stylophora pistillata T... [more]
A0A6S7HVZ4_PARCT4.440e-1430.86RNA-directed DNA polymerase from transposon BS n=1... [more]
A0A6S7G7N1_PARCT7.480e-1430.86RNA-directed DNA polymerase from transposon BS n=6... [more]
A0A1X7T065_AMPQE1.330e-1130.38Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00138FABF83.850e-827.24uncharacterized protein LOC116604706 n=1 Tax=Nemat... [more]
A0A7S0LT69_9EUKA2.870e-628.90Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A6S7KMY7_PARCT9.450e-629.09RNA-directed DNA polymerase from transposon BS (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:124395..127641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350435|estExt_Genemark1.C_Ctg_630014
Max annot lvl400682.PAC_15703819|-
EggNOG OGs2F3H4@1|root,2T4GH@2759|Eukaryota,3AMYP@33154|Opisthokonta,3C10E@33208|Metazoa
Evalue1.25e-12
Seed ortholog400682.PAC_15703819
Hectar predicted targeting categoryother localisation
TranscriptId350757
TrackFilteredModels1
ProteinId350435
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350435gene_10270Tribonema minus UTEX_B_3156 geneContig_63 124395..127641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350435Trimin1|350435|estExt_Genemark1.C_Ctg_630014Tribonema minus UTEX_B_3156 polypeptideContig_63 124664..127641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10270_5exon_10270_5Tribonema minus UTEX_B_3156 exonContig_63 124395..124688 -
exon_10270_4exon_10270_4Tribonema minus UTEX_B_3156 exonContig_63 125633..125995 -
exon_10270_3exon_10270_3Tribonema minus UTEX_B_3156 exonContig_63 126324..126396 -
exon_10270_2exon_10270_2Tribonema minus UTEX_B_3156 exonContig_63 126790..127261 -
exon_10270_1exon_10270_1Tribonema minus UTEX_B_3156 exonContig_63 127372..127641 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10270UTR3_10270Tribonema minus UTEX_B_3156 three_prime_UTRContig_63 124395..124663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10270CDS_10270Tribonema minus UTEX_B_3156 CDSContig_63 127372..127641 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10270 ID=mRNA_10270|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1472bp|location=Sequence derived from alignment at Contig_63:124395..127641- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTGGTCATCAGCGATTCCGCTGATGATGGCAAGAGGGCCAACGG
CAGTGGCAGCGACGGCGGTGGCAGCGATGGCGGTGGCAGCGATGGCGGTG
GCAGCGATGGCGGTGGCAGCGATGACAGTGGCAGTGCTGCTGCAGCCAGG
CGCACAGCCAGCAGCGAGAAGCGTACTGCTGTCAGCAGTGGTGTCAAGAA
GCGCGCTCAGCCTGCACCTCCTGTGGGGATCAGGACAGGGAAGCGGCGCA
TGCAAGTCAGTGCGAAACAGGTGGCCAAGCGCATCAAAGAGCACCCTGAC
GTTTTGGCAGCGGACGCGGGCAGGCTGTGGTGCCGCCTCTGCAAGACAGA
ACTTGCTGAGGACAAGACTTCTGTGGACCGCCACATCGCTATCACCAAGC
ACATCAGCGCAGCAGAAAAGGACGCTGCGAAGGTTGCGCTCGGGAAGACT
CGCAGTCGGCTCCTCAGCGAATACTTCGCTGAGACTAACGCCAAAGGCGC
CAGCCTGACGGATGCCCAGCAATTATTTCGGGTGGACACTCTGCGCATGC
TGCTCATAAGCGCCATCCCGCTCCACAAGCTGGAAGGGCCCCTGCGTGGC
GCTCTGGAGCGCGGCGGCCACAGCCTCACCAACTCCTCGCACATGGCTGA
GCTTCTGCCATTTGTTCTCCGGGAAGAGATGGCTACCTTGCGGCAAGAGA
TCGCCGGCAGGAAGCTGAGTGTCATCTTTGATGGCACAACACGTGTGCTG
GTGACGCTGCTTATGACCACTCTGGCTGTCAAGGCAGATGATGTCATCCA
GTTTCAGATCGACAGGTGGTGGTCCGAGTTCGAGGTGCTCATGCAGGTGC
TGACTTTGGAGCAGCAGTGGGAGGCAGCTTCCAGGGGCAGCGCCATAGCA
GCGTTCCTTCAGAGCGCCGCTGTCAAGCTGCCCAAGAACGACACCGTGAC
CAAGAGCTTGATTCCCAAGTGGCGCATCACAGCTAATCAGCGTGCCATCA
CATTCGAGCTTGTCTGTCTTCAGGCTGCAGCCAAGCCTTTCGTACAGGCT
ACGTACCTGCTCGAGGGGGATGGGCCGCTCGCGATGATCACGTATGACTT
GATCCAGGGGCTGGACAGCGCCAGGCGGGACCTGCTGCCTAACATGCTCT
TCCCTGCCGTCCAGCAGCTTGCGGCAAATGCAACCATCCTCTGCAGCGGC
TGAGCGCGCGTTTTCCATTCTCAAAGCATCATTTGGAGACCAGCAGGGTA
ATGTCCTTGAGGACTATGTGGCCAGCAGCTGCATGCTGCAGTACAACACG
CGCACTTGCTGATGTGCGTGCCTTCTACATGTAAAGTACATATTTTTCCG
TCATACAGTCCAACCACTCCAGCCACGTGTGCATAACCTGTTGCTGGCAT
GCGCATTTGTTTTGTCTGCTGCAATGCTGCCCCTTGCGTACTTGTGCTAA
TACATCCACACGTACGTCAAAG
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protein sequence of jgi.p|Trimin1|350435

>Trimin1|350435|estExt_Genemark1.C_Ctg_630014 ID=Trimin1|350435|estExt_Genemark1.C_Ctg_630014|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=401bp
MEVVISDSADDGKRANGSGSDGGGSDGGGSDGGGSDGGGSDDSGSAAAAR
RTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPD
VLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKT
RSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRG
ALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVL
VTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIA
AFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQA
TYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG
*
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mRNA from alignment at Contig_63:124395..127641-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10270 ID=mRNA_10270|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3247bp|location=Sequence derived from alignment at Contig_63:124395..127641- (Tribonema minus UTEX_B_3156 )
ATGGAGGTGGTCATCAGCGATTCCGCTGATGATGGCAAGAGGGCCAACGG CAGTGGCAGCGACGGCGGTGGCAGCGATGGCGGTGGCAGCGATGGCGGTG GCAGCGATGGCGGTGGCAGCGATGACAGTGGCAGTGCTGCTGCAGCCAGG CGCACAGCCAGCAGCGAGAAGCGTACTGCTGTCAGCAGTGGTGTCAAGAA GCGCGCTCAGCCTGCACCTCCTGTGGGGATCAGGACAGGGAAGCGGCGCA TGCAAGTCAGTGCGAAACAGGTGAGGCAACTTGCATAGCTCACGTGGAAG TTGACGTTCACACTTGAGCACCAGTAGCAGCATGTGCCTTTGACCGTCTC TCCTTGCACTGCTCGCGTATATTTGAGCAGGTGGCCAAGCGCATCAAAGA GCACCCTGACGTTTTGGCAGCGGACGCGGGCAGGCTGTGGTGCCGCCTCT GCAAGACAGAACTTGCTGAGGACAAGACTTCTGTGGACCGCCACATCGCT ATCACCAAGCACATCAGCGCAGCAGAAAAGGACGCTGCGAAGGTTGCGCT CGGGAAGACTCGCAGTCGGCTCCTCAGCGAATACTTCGCTGAGACTAACG CCAAAGGCGCCAGCCTGACGGATGCCCAGCAATTATTTCGGGTGGACACT CTGCGCATGCTGCTCATAAGCGCCATCCCGCTCCACAAGCTGGAAGGGCC CCTGCGTGGCGCTCTGGAGCGCGGCGGCCACAGCCTCACCAACTCCTCGC ACATGGCTGAGCTTCTGCCATTTGTTCTCCGGGAAGAGATGGCTACCTTG CGGCAAGAGATCGCCGGCAGGAAGCTGAGTGTCATCTTTGATGGCACAAC ACGTGGCGCTGAGGTGCTGGCAGTTGTGCTGAGGCAAGTGCATTTTTCTT GATGTTGCGTGAGTTAAATTGCTTGGTCAGTACATGTACTGCTGCAATTA CACAGTGCCCCCCTGCTCACGTTACAATGCCTAACACAAAGGTTCATGGC CGTGATGACACTGCTGCTGCAGGTATGTCAATGACGACATGACCATTCAC CAGCGGCTGGTCCACATGGGGCACTATGCCCGTTCGTTCAACAACCGGGA GCTCTCTGGTAAGCTCAAATGAGAAATACAGTCTGTGCCTTTCTCGCTTG CTACTGTGGCTGGCATACGCGTATAGTCCAATGCCATGCCATGCTTGTCT GCTAATTGTCGCTGCATTGTTCGCCAACATTTGCTGGTGCTGCAGGTGTG CTGGTGACGCTGCTTATGACCACTCTGGCTGTCAAGGCAGATGATGTCAT CCAGTTTCAGATCGACAGGTCTGAAACAGGGCTCGTGGCAGTGGACACCC TGCAGAACATCTACCACAGCGCATCAGCTGGTGCATGCTTGGCACATACA CTCGACCACTGCGGAGAGCATGTGTTGCTTCCCACAGCGCAGACCTTCTG CAGCAGCCTGAGCGCATTGCTGTCTAAGAGCCTGGTGGCTAAAAAGGTGT GGCAGGCAGAAACTGGCACCACGCTCCAGTCAAAGTCAAAGACAAGGTCA GTTCGCTATGAGGTTTTGCATTTGATGGCCCTTTATTTATGATGCAGCAC ATTCACCACGTATTACGTGTGTCTATGCTGCATGTTGCCGTGACAGGTGG TGGTCCGAGTTCGAGGTGCTCATGCAGGTGCTGACTTTGGAGCAGCAGTG GGAGGCAGCTTCCAGGGGCAGCGCCATAGCAGCGTTCCTTCAGAGCGCCG CTGTCAAGCTGCCCAAGAACGACACCGTGACCAAGAGCTTGATTCCCAAG TGGCGCATCACAGCTAATCAGCGTGCCATCACATTCGAGCTTGTCTGTCT TCAGGCTGCAGCCAAGCCTTTCGTACAGGCTACGTACCTGCTCGAGGGGG ATGGGCCGCTCGCGATGATCACGTATGACTTGATCCAGGGGCTGGACAGC GCCAGGCGGGACCTGCTGCCTAACATGCTCTTCCCTGCCGTCCAGCAGCT TGCGGCAAAGTATGGGCGAGCAGGCAAGCCCCCCCCCGAAGCTGCAGCAC AGGTACAATACTAGTATATACCCATCTGATTGTCTTCAAGCACCTCCCTC ATGCGTGCTTGATGATGTACGCTTTTATGTACACAACATAGCGTACTTGC TTCTGCCAGGTACTAACCACACTCCTGGAATGCTATTTGGAGGTGATGCA CTGCAGAATGCATCCCTCAACTTTCCTGCCTGACCGCGCTGCACTCAATG TGGTCCTCATACATGCCTGATGTGCACTTTCTGAATTGAATGCGCTGCAC CCAACGTGCCTCTTGCATGACTGAAACAAGCTTATATAAGTGCGCCGCAC TCAGGCTGCAGACGGTGTGCCTCATGCACGGTGGACATATGTTTGCTTAC ATCAAAGCTTATCTGGTGCCCACATCTTCAACCACATTGTCTTTGACACT GTCTGCATGCGCTGCACTGCAGAATGTGAGGTGCAACCGTGCGCCCCTGC AAGGTGCAGAGATGCAGGCAGCCAGCACCGCAGCCAGGCAGATCGCAAGT GCACAGCAGAACCCATTGGAGCTTCAGTGGCTGCAGTACGGTATGTACCT CATTGCGGGGTGCTTCAGCTACTTCCACGCAACAGTCATGCTGCACCTGG CACCTCACCTACTGCTGTACAAGGCAGCAAGGCTTTGTCACCCCTTGCGC ATGGCTGACCTGCGTGTCAGCGCGGAGGATGTGCGCACTCTCCTTTCCGA TGAGGGTCTACTCGAGTTTGCACCATTCTTGCGTGCTTTCTCAGTAGACG ACCTTGTCATTGAGCTAGGTGCGTACAAGGCTGCAGTGGAGGACCTGGGG GGGGGTGATCCGGAGTTTAAGACCGAGCACATAATGCCCTTCTGGGCTAG GCACCGCCTTGACCTGCCCAACTGGTGTTCGCTTGCCCGGGCATTTGCCA CAGTGCAACCATCCTCTGCAGCGGCTGAGCGCGCGTTTTCCATTCTCAAA GCATCATTTGGAGACCAGCAGGGTAATGTCCTTGAGGACTATGTGGCCAG CAGCTGCATGCTGCAGTACAACACGCGCACTTGCTGATGTGCGTGCCTTC TACATGTAAAGTACATATTTTTCCGTCATACAGTCCAACCACTCCAGCCA CGTGTGCATAACCTGTTGCTGGCATGCGCATTTGTTTTGTCTGCTGCAAT GCTGCCCCTTGCGTACTTGTGCTAATACATCCACACGTACGTCAAAG
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Coding sequence (CDS) from alignment at Contig_63:124395..127641-

>mRNA_10270 ID=mRNA_10270|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1203bp|location=Sequence derived from alignment at Contig_63:124395..127641- (Tribonema minus UTEX_B_3156 )
ATGGAGGTGGTCATCAGCGATTCCGCTGATGATGGCAAGAGGGCCAACGG
CAGTGGCAGCGACGGCGGTGGCAGCGATGGCGGTGGCAGCGATGGCGGTG
GCAGCGATGGCGGTGGCAGCGATGACAGTGGCAGTGCTGCTGCAGCCAGG
CGCACAGCCAGCAGCGAGAAGCGTACTGCTGTCAGCAGTGGTGTCAAGAA
GCGCGCTCAGCCTGCACCTCCTGTGGGGATCAGGACAGGGAAGCGGCGCA
TGCAAGTCAGTGCGAAACAGGTGGCCAAGCGCATCAAAGAGCACCCTGAC
GTTTTGGCAGCGGACGCGGGCAGGCTGTGGTGCCGCCTCTGCAAGACAGA
ACTTGCTGAGGACAAGACTTCTGTGGACCGCCACATCGCTATCACCAAGC
ACATCAGCGCAGCAGAAAAGGACGCTGCGAAGGTTGCGCTCGGGAAGACT
CGCAGTCGGCTCCTCAGCGAATACTTCGCTGAGACTAACGCCAAAGGCGC
CAGCCTGACGGATGCCCAGCAATTATTTCGGGTGGACACTCTGCGCATGC
TGCTCATAAGCGCCATCCCGCTCCACAAGCTGGAAGGGCCCCTGCGTGGC
GCTCTGGAGCGCGGCGGCCACAGCCTCACCAACTCCTCGCACATGGCTGA
GCTTCTGCCATTTGTTCTCCGGGAAGAGATGGCTACCTTGCGGCAAGAGA
TCGCCGGCAGGAAGCTGAGTGTCATCTTTGATGGCACAACACGTGTGCTG
GTGACGCTGCTTATGACCACTCTGGCTGTCAAGGCAGATGATGTCATCCA
GTTTCAGATCGACAGGTGGTGGTCCGAGTTCGAGGTGCTCATGCAGGTGC
TGACTTTGGAGCAGCAGTGGGAGGCAGCTTCCAGGGGCAGCGCCATAGCA
GCGTTCCTTCAGAGCGCCGCTGTCAAGCTGCCCAAGAACGACACCGTGAC
CAAGAGCTTGATTCCCAAGTGGCGCATCACAGCTAATCAGCGTGCCATCA
CATTCGAGCTTGTCTGTCTTCAGGCTGCAGCCAAGCCTTTCGTACAGGCT
ACGTACCTGCTCGAGGGGGATGGGCCGCTCGCGATGATCACGTATGACTT
GATCCAGGGGCTGGACAGCGCCAGGCGGGACCTGCTGCCTAACATGCTCT
TCCCTGCCGTCCAGCAGCTTGCGGCAAATGCAACCATCCTCTGCAGCGGC
TGA
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