Trimin1|169351|e_gw1.63.107.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|169351
Unique Name	Trimin1\|169351\|e_gw1.63.107.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	168

Homology

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BLAST of jgi.p|Trimin1|169351 vs. uniprot
Match: A0A835YM90_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM90_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.020e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query:    1 MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGERD 168
            MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGERD
Sbjct:    1 MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGERD 168

[Close]

BLAST of jgi.p|Trimin1|169351 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.080e-6
Identity = 56/126 (44.44%), Postives = 70/126 (55.56%), Query Frame = 0

Query:   41 DMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGE 166
            ++TTY LA++ACR   A+  A           XXXXXXXXXXXXXXXX  RD  RA+ +FRDMEA      A  D   WN LL  L+A   P + L+   +MA+RG AP   +Y     A A  G+
Sbjct:    9 NLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHL---AFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGD 131

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|169351 vs. uniprot

BLAST of jgi.p|Trimin1|169351 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YM90_9STRA	2.020e-87	100.00	PPR_long domain-containing protein (Fragment) n=1 ...	[more]
A0A835ZBY4_9STRA	3.080e-6	44.44	PPR_long domain-containing protein (Fragment) n=1 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 64..167 e-value: 2.9E-8 score: 33.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 15..168 e-value: 3.2E-26 score: 94.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 118..151 e-value: 0.0031 score: 15.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 115..149 score: 9.821383
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 12..155

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_63	contig	Contig_63:379716..380219 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|169351	mRNA_10290	Tribonema minus UTEX_B_3156	mRNA	Contig_63 379716..380219 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|169351|e_gw1.63.107.1 ID=Trimin1|169351|e_gw1.63.107.1|Name=jgi.p|Trimin1|169351|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVR
ACRGPHALSTADGLLQEAKAAGLEPDAVMFSAMLRACKLSRDADRALALF
RDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPD
EISYAYALAARAARGERD

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033443	PPR_long
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat