mRNA_10305 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A835YMA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA1_9STRA) HSP 1 Score: 308 bits (788), Expect = 7.490e-106 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1
Query: 1 PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI
Sbjct: 1 PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 159
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A836CRK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRK4_9STRA) HSP 1 Score: 272 bits (696), Expect = 1.570e-90 Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 1
Query: 19 TPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
TP T KALYFTETTMRSLAKA+VWRV AAVITL SGLVFSKNL+ AASIVGSDFVTKSGFMFLGER WNKVNWGKGAKTDGAKRSLAKALLWRVFA GNTLICGAFLAGDLSVALKIAGSDTVFKT LFYINERMWARVEWGKEY+ +FVI
Sbjct: 95 TPPTDTGKALYFTETTMRSLAKAVVWRVTAAVITLISGLVFSKNLKTAASIVGSDFVTKSGFMFLGERVWNKVNWGKGAKTDGAKRSLAKALLWRVFAAGNTLICGAFLAGDLSVALKIAGSDTVFKTFLFYINERMWARVEWGKEYEIEFVI 247
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A6H5KZ71_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ71_9PHAE) HSP 1 Score: 199 bits (507), Expect = 7.490e-62 Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 1
Query: 1 PSTAAATPSTANLK-ALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
P T A P+T L+ AL + E+ RS KA+VWR+ A V+TL SGLVFS +L A SIVGSDFVTKSGFMF GER WNKV WG+ D KRSLAKA+LWRVFA NTLICG FLA DLSVA KIAG+DT+FKT LF++NER W +++WGKEY+ ++ +
Sbjct: 86 PETPDAPPTTEELRPALVYGESAARSFVKALVWRLTAGVVTLVSGLVFSGSLATAMSIVGSDFVTKSGFMFAGERLWNKVKWGQDKSGDSTKRSLAKAVLWRVFAASNTLICGVFLAKDLSVASKIAGTDTLFKTALFFLNERAWTKIDWGKEYEPEYYL 245
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7S2UXG1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXG1_9STRA) HSP 1 Score: 173 bits (439), Expect = 8.650e-52 Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWG-----KGAKT--DGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
FTET RS+ KA++WR+ A +IT + +FS +L AA IVG DFV+K+GFM++GER W+KVNWG K +KT D RSL KAL+WR FA NTL+ F+A D+S+A KIA SDTVFKT LFYINER+W+RVEWGKEY ++ I
Sbjct: 79 FTETNKRSIVKALLWRLTAGIITFITSFIFSGDLSTAAKIVGGDFVSKAGFMYVGERVWSKVNWGRTKGNKDSKTAMDSKSRSLTKALVWRAFAATNTLVMSFFMAKDVSIAGKIASSDTVFKTFLFYINERIWSRVEWGKEYQLEYNI 227
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7R9ZQP1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQP1_9STRA) HSP 1 Score: 157 bits (396), Expect = 7.050e-46 Identity = 82/142 (57.75%), Postives = 98/142 (69.01%), Query Frame = 1
Query: 52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
F+ETT RS KA WR+ A +T + L FS +L A SIVGSDF +KS MF+GER NK N G+ A DGA RSLAKAL+WR+FA NTL F+A D+S+A KIAGSD +FKT L + ER WA+VEWGKEYD F I
Sbjct: 40 FSETTARSAVKAFAWRIIAGAVTFFTSLRFSGSLATALSIVGSDFFSKSFTMFIGERLMNKSNAGRTAGGDGAGRSLAKALIWRLFAICNTLTMAIFVAKDISIASKIAGSDAIFKTALMFFYERAWAKVEWGKEYDPGFSI 181
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A4D9CUV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUV7_9STRA) HSP 1 Score: 156 bits (394), Expect = 3.080e-45 Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 1
Query: 58 ETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKT-DGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
E+ +RSL KA WR+ AA+ITL++ L FS++ +MAASIV SDF++K+G M+LGER WNKV+WGK AK+ D A RS+ KA WR FA NTLI F A + VA +IA +DT+ KT L+ ++ER+W+R++WG+ YD ++ I
Sbjct: 67 ESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKSGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERVWSRIDWGRSYDVEYNI 207
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A1E7EW78_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW78_9STRA) HSP 1 Score: 154 bits (389), Expect = 9.140e-45 Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 1
Query: 52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
F+ETT RS KA++WRV A +T + L FS +++ A +IVGSDF++K+ MF+GER NK N G+ + DGA RSL KAL+WR+FA NTL F+A D+++A KIAGSD +FKT L ++ ER+WA++EWGKEY DF I
Sbjct: 44 FSETTARSAVKALMWRVIAGSVTFITSLRFSGSMKTALTIVGSDFLSKAFTMFIGERLMNKSNAGRESGADGAGRSLMKALVWRLFAICNTLTMAIFIAKDITMASKIAGSDAIFKTGLMFVYERVWAKIEWGKEYQVDFFI 185
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7R9ZQR0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQR0_9STRA) HSP 1 Score: 157 bits (396), Expect = 9.830e-45 Identity = 82/142 (57.75%), Postives = 98/142 (69.01%), Query Frame = 1
Query: 52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
F+ETT RS KA WR+ A +T + L FS +L A SIVGSDF +KS MF+GER NK N G+ A DGA RSLAKAL+WR+FA NTL F+A D+S+A KIAGSD +FKT L + ER WA+VEWGKEYD F I
Sbjct: 132 FSETTARSAVKAFAWRIIAGAVTFFTSLRFSGSLATALSIVGSDFFSKSFTMFIGERLMNKSNAGRTAGGDGAGRSLAKALIWRLFAICNTLTMAIFVAKDISIASKIAGSDAIFKTALMFFYERAWAKVEWGKEYDPGFSI 273
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7S1Y2U4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2U4_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.380e-43 Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 1
Query: 52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
F+ETT RS KA WR+ A +T + L FS +L+ A +IVGSDF +K+ MF+GER NK N G+ D KRSLAKALLWR+FA NTL F+A DLS+A KIAGSD +FKT L + ER+WA++EWGKEY +F I
Sbjct: 109 FSETTGRSAVKAFCWRLIAGSVTFVTSLRFSGSLKTALTIVGSDFFSKAFTMFIGERLMNKSNAGRKGGADDVKRSLAKALLWRLFAIANTLTMAVFIAKDLSMASKIAGSDAIFKTALMFGYERVWAKIEWGKEYQVEFSI 250
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7S1B4Q8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4Q8_9STRA) HSP 1 Score: 153 bits (387), Expect = 4.670e-43 Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 1
Query: 52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
F E+T RSL K+I+WR+ A +T + L FS ++++A SIVGSDF +K+ MFLGER N + G+G+ D KRSL KAL+WR+FA NTL F+A DLS+A KIA SD V KT + Y ER+W++VEWGKEY+A+F I
Sbjct: 161 FKESTTRSLVKSIMWRMVAGTVTFITSLRFSGSVKVALSIVGSDFFSKALTMFLGERLMNNSSLGRGSSGDNKKRSLIKALIWRLFAIANTLTVAVFVAKDLSIASKIASSDAVIKTTMMYFYERIWSKVEWGKEYEAEFFI 302 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10305 ID=mRNA_10305|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_63:482443..482919+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTTCGACCGCCGCCGCAACGCCCAGCACAGCCAACTTGAAGGCGCTTTAback to top protein sequence of jgi.p|Trimin1|152568 >Trimin1|152568|gw1.63.110.1 ID=Trimin1|152568|gw1.63.110.1|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNback to top mRNA from alignment at Contig_63:482443..482919+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10305 ID=mRNA_10305|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_63:482443..482919+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_63:482443..482919+ >mRNA_10305 ID=mRNA_10305|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_63:482443..482919+ (Tribonema minus UTEX_B_3156 )back to top |