mRNA_10255 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143080
Unique NamemRNA_10255
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A836CJ24_9STRA (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ24_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.900e-46
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 YCYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            YCYALCNE GRTYVGYTVCPARRIRQHNS IKGGAKATRGRGPWRFIYV+DCIDYSASDALSLEWHIKHP
Sbjct:    4 YCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 73
[Close]
BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A836CN45_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN45_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.560e-39
Identity = 57/70 (81.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 YCYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            YCYALCN+ GRTY+GYTVCP+RR+RQHNS+IKGGAKATRGRGPWRFIYV++ I+++AS+ALSLEWHIKHP
Sbjct:    4 YCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHP 73
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BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A835ZCR8_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.200e-25
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    4 CYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            CY + NE GRTYVGYTV P RR+RQHN  +KGGA+ T G+GPWR++ V+    +    ALS EWH+KHP
Sbjct:    2 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 70
[Close]
BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A836CIF4_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.630e-24
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 YCYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            +CY + NE GRTYVGYTV P RR+RQHN  I GGA++T G+GPWRF +V+    + +   LS EWH+K P
Sbjct:    4 FCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP 73
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BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A6C0CV58_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CV58_9ZZZZ)

HSP 1 Score: 82.0 bits (201), Expect = 2.630e-18
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 YCYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVI-----DCIDYSASDALSLEWHIKHP 210
            YCY + N + RTY GYTV   RR++QHN  I+GGAKATRGRGPW F+ ++     DCI    S A+  EW IK+P
Sbjct:    4 YCYVIGNANDRTYNGYTVNLTRRLKQHNGVIQGGAKATRGRGPWEFVLILTSECWDCI----SVAMQHEWSIKYP 74
[Close]
BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A6C0F1Y7_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F1Y7_9ZZZZ)

HSP 1 Score: 78.6 bits (192), Expect = 1.120e-16
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 YCYALCNEH------GRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            YCY L          GRTY GYTV    R+RQHN  IKGGA AT+ +GPW FI V+ C+D+++  A+ +EW I++P
Sbjct:   35 YCYILGQTRHVRTGVGRTYNGYTVDLTHRLRQHNGEIKGGAFATKNKGPWEFIAVMTCLDWTSVRAMQVEWLIRYP 110
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BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A3G4ZPN0_9VIRU (GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZPN0_9VIRU)

HSP 1 Score: 69.7 bits (169), Expect = 1.560e-13
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 YCYALCNEH----GRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            YCY L + +      TYVG TV P RR+RQHN  + GGAKAT+ R P+    +I     +  DALS EWHIKHP
Sbjct:    4 YCYILRSVNPLYPNNTYVGMTVNPTRRLRQHNGELVGGAKATKTRQPYEMYCIISGFP-TLHDALSYEWHIKHP 76
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BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A0F2S0S7_9PROT (GIY-YIG domain-containing protein n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2S0S7_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 9.440e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   13 LCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIK 204
            L NE G TYVG T   ARR+RQHN  + GGA+ATRGRG W  +YV D     A+ A S E+++K
Sbjct:    2 LANERGHTYVGITTDVARRVRQHNGEVVGGARATRGRGVWCVVYVEDGFPGRAA-AQSREYYLK 64
[Close]
BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A7S2GS18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GS18_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.280e-12
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   34 TYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIKHP 210
            TY+G+TV PARRIRQHN  I  GAK T    PW  + V+    +S + ALS EWH +HP
Sbjct:    4 TYIGFTVNPARRIRQHNGEISAGAKRTHKCRPWEIVAVVHGFPHSTA-ALSFEWHWQHP 61
[Close]
BLAST of jgi.p|Trimin1|143080 vs. uniprot
Match: A0A349LYJ1_9GAMM (GIY-YIG domain-containing protein n=1 Tax=Rheinheimera sp. TaxID=1869214 RepID=A0A349LYJ1_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 4.770e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 YCYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVIDCIDYSASDALSLEWHIK 204
            Y Y L N+ G  Y G +  PARR+RQHN  ++GGAKA RG+GP+  ++ I C D S   AL LE+ +K
Sbjct:    5 YLYLLQNQPGLLYAGISTDPARRLRQHNGELQGGAKALRGKGPFVVLHQIACADKSM--ALRLEYQLK 70
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143080 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ24_9STRA2.900e-4695.71GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A836CN45_9STRA2.560e-3981.43GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCR8_9STRA6.200e-2557.97GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A836CIF4_9STRA8.630e-2455.71GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A6C0CV58_9ZZZZ2.630e-1853.33GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0F1Y7_9ZZZZ1.120e-1648.68GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A3G4ZPN0_9VIRU1.560e-1350.00GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=... [more]
A0A0F2S0S7_9PROT9.440e-1353.13GIY-YIG domain-containing protein n=1 Tax=Rhodospi... [more]
A0A7S2GS18_9STRA4.280e-1252.54Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A349LYJ1_9GAMM4.770e-1248.53GIY-YIG domain-containing protein n=1 Tax=Rheinhei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:24267..24476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143080|gw1.63.48.1
BRITEko00000,ko00001,ko01000,ko03041,ko03400
KEGG Pathwayko03460,ko04212,map03460,map04212
KEGG koko:K13113,ko:K15078
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000712,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0001325,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0008821,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010792,GO:0010833,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033557,GO:0034641,GO:0035825,GO:0036297,GO:0040019,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045002,GO:0045132,GO:0045934,GO:0045935,GO:0045995,GO:0046483,GO:0048256,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061062,GO:0061064,GO:0061820,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090657,GO:0090737,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1903046,GO:1904356,GO:1904357,GO:1904429,GO:1904431,GO:2000026,GO:2001251,GO:2001252
Preferred nameSLX1A
Description5'-flap endonuclease activity
COG categoryL
Max annot lvl33208|Metazoa
EggNOG OGsKOG3005@1|root,KOG3005@2759|Eukaryota,39TYN@33154|Opisthokonta,3BGAD@33208|Metazoa,3CZR0@33213|Bilateria
Evalue7.24e-12
Seed ortholog6183.Smp_106040.1
Hectar predicted targeting categoryother localisation
TranscriptId143402
TrackFilteredModels1
ProteinId143080
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143080gene_10255Tribonema minus UTEX_B_3156 geneContig_63 24267..24476 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10255_1exon_10255_1Tribonema minus UTEX_B_3156 exonContig_63 24267..24476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10255CDS_10255Tribonema minus UTEX_B_3156 CDSContig_63 24267..24476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143080Trimin1|143080|gw1.63.48.1Tribonema minus UTEX_B_3156 polypeptideContig_63 24267..24476 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10255 ID=mRNA_10255|Name=jgi.p|Trimin1|143080|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_63:24267..24476+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TATTGCTATGCGTTGTGCAATGAACATGGACGAACATATGTAGGCTATAC
TGTATGCCCTGCTAGGCGCATCAGACAGCACAATTCAGCCATCAAAGGCG
GAGCAAAAGCGACAAGAGGACGAGGCCCATGGCGGTTCATATATGTGATT
GACTGCATAGACTATTCTGCAAGTGATGCACTGTCTCTAGAGTGGCACAT
CAAGCACCCT
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protein sequence of jgi.p|Trimin1|143080

>Trimin1|143080|gw1.63.48.1 ID=Trimin1|143080|gw1.63.48.1|Name=jgi.p|Trimin1|143080|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
YCYALCNEHGRTYVGYTVCPARRIRQHNSAIKGGAKATRGRGPWRFIYVI
DCIDYSASDALSLEWHIKHP
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mRNA from alignment at Contig_63:24267..24476+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10255 ID=mRNA_10255|Name=jgi.p|Trimin1|143080|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_63:24267..24476+ (Tribonema minus UTEX_B_3156 )
TATTGCTATGCGTTGTGCAATGAACATGGACGAACATATGTAGGCTATAC
TGTATGCCCTGCTAGGCGCATCAGACAGCACAATTCAGCCATCAAAGGCG
GAGCAAAAGCGACAAGAGGACGAGGCCCATGGCGGTTCATATATGTGATT
GACTGCATAGACTATTCTGCAAGTGATGCACTGTCTCTAGAGTGGCACAT
CAAGCACCCT
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Coding sequence (CDS) from alignment at Contig_63:24267..24476+

>mRNA_10255 ID=mRNA_10255|Name=jgi.p|Trimin1|143080|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_63:24267..24476+ (Tribonema minus UTEX_B_3156 )
TATTGCTATGCGTTGTGCAATGAACATGGACGAACATATGTAGGCTATAC
TGTATGCCCTGCTAGGCGCATCAGACAGCACAATTCAGCCATCAAAGGCG
GAGCAAAAGCGACAAGAGGACGAGGCCCATGGCGGTTCATATATGTGATT
GACTGCATAGACTATTCTGCAAGTGATGCACTGTCTCTAGAGTGGCACAT
CAAGCACCCT
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