mRNA_6529 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350421
Unique NamemRNA_6529
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350421 vs. uniprot
Match: A0A835YMH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH4_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.090e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 3 
Query:   75 MMRLASAIAVALAGAVIFALNELYWGRMPVLEFSTYMAVLLFSLLGLGAVLSEKGQLAVFPSEPEGPEPEVVQSDTADRVVLDLDADALGRLSPEDTSAPLTDEQLGEEISRERSHTLTERIIQGIHG 458
            MMRLASAIAVALAGAVIFALNELYWGRMPVLEFSTYMAVLLFSLLGLGAVLSEKGQLAVFPSEPEGPEPEVVQSDTADRVVLDLDADALGRLSPEDTSAPLTDEQLGEEISRERSHTLTERIIQGIHG
Sbjct:    1 MMRLASAIAVALAGAVIFALNELYWGRMPVLEFSTYMAVLLFSLLGLGAVLSEKGQLAVFPSEPEGPEPEVVQSDTADRVVLDLDADALGRLSPEDTSAPLTDEQLGEEISRERSHTLTERIIQGIHG 128
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350421 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YMH4_9STRA1.090e-78100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:457294..458662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350421|estExt_Genemark1.C_Ctg_620057
Hectar predicted targeting categorysignal peptide
TranscriptId350743
TrackFilteredModels1
ProteinId350421
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350421gene_6529Tribonema minus UTEX_B_3156 geneContig_62 457294..458662 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6529_2exon_6529_2Tribonema minus UTEX_B_3156 exonContig_62 457294..457917 -
exon_6529_1exon_6529_1Tribonema minus UTEX_B_3156 exonContig_62 458612..458662 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6529UTR3_6529Tribonema minus UTEX_B_3156 three_prime_UTRContig_62 457294..457507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6529CDS_6529Tribonema minus UTEX_B_3156 CDSContig_62 457508..457894 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6529UTR5_6529Tribonema minus UTEX_B_3156 five_prime_UTRContig_62 458612..458662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350421Trimin1|350421|estExt_Genemark1.C_Ctg_620057Tribonema minus UTEX_B_3156 polypeptideContig_62 457508..457894 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6529 ID=mRNA_6529|Name=jgi.p|Trimin1|350421|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=675bp|location=Sequence derived from alignment at Contig_62:457294..458662- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTCTGAATGGCAGTTCTTGAGAGGCTACATCAGCTAAGCGTGTCCGCCA
GGCTGCTGCACGTCAGCCGCTGCCATGATGCGCCTGGCGTCAGCCATAGC
GGTGGCCCTGGCAGGCGCCGTCATCTTCGCTCTCAATGAGCTCTACTGGG
GCCGCATGCCCGTACTCGAGTTCTCAACATACATGGCGGTGCTGCTGTTC
TCGCTACTGGGGCTGGGAGCAGTGCTCAGCGAAAAGGGGCAGCTGGCGGT
CTTTCCGTCCGAACCAGAGGGGCCGGAGCCGGAGGTGGTGCAGAGCGATA
CTGCTGACAGGGTAGTGCTGGATCTCGATGCGGATGCTCTGGGCAGATTG
AGCCCAGAGGACACGAGCGCACCTCTGACGGACGAGCAATTAGGAGAGGA
GATCAGTAGGGAGCGCTCTCACACGCTCACGGAGAGGATCATACAGGGGA
TACACGGGTGACAGGCGGCGCTGCTGCGTTCAGCGGCGTGTGCGCGGTGG
CGGCAGTGGCGGCGCTGCCCGGATGTCAAAATAGCTGTACATACGCACCC
TGCATGCGTGCATGCAGATAGATGTATACTAATAGTGCAGTCGTTCCTAG
TCTCCTGGACGTTGTTGCCGCTGCCGCCCTTCGTTTGCCTGCGGCCACAA
TGTGTGCATGTACGCAATGGGGAGC
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protein sequence of jgi.p|Trimin1|350421

>Trimin1|350421|estExt_Genemark1.C_Ctg_620057 ID=Trimin1|350421|estExt_Genemark1.C_Ctg_620057|Name=jgi.p|Trimin1|350421|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MMRLASAIAVALAGAVIFALNELYWGRMPVLEFSTYMAVLLFSLLGLGAV
LSEKGQLAVFPSEPEGPEPEVVQSDTADRVVLDLDADALGRLSPEDTSAP
LTDEQLGEEISRERSHTLTERIIQGIHG*
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mRNA from alignment at Contig_62:457294..458662-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6529 ID=mRNA_6529|Name=jgi.p|Trimin1|350421|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1369bp|location=Sequence derived from alignment at Contig_62:457294..458662- (Tribonema minus UTEX_B_3156 )
GCTCTGAATGGCAGTTCTTGAGAGGCTACATCAGCTAAGCGTGTCCGCCA
GGTAAGCTGTGCATATGCCTGATACAGTGCCCTGAGCGATCTGGCGATCT
GTACTGCTTCGCGTGTTTGTGTTTGTGCAGCAGGAGAAGCTGCGTTTTCA
AAAGCGTTTGAGTAAAGCGTTTGACTACTGACCCAACGCATGTAAATTCA
GTCAGGGTGCCTTTCTTTGTCTTACACAGTATCCGAGTAGCGAAAACGTT
AGCCGTCTTGTCGATAGTTGAGGTCACTGGACATATTCTTCTTGTTGGGG
ATCAACGGCGACCTTCATTGAGCTGCATGAAAGTCCCACATTCTCATGTT
AGCAGCGGCTGCGCCACGCAGCTTCACGCGCAGCAGCGTTGGTGCGATGC
TTCCTGCTGCTGCAAGCAGCTAAATTGAAGCCTAAGAACGCTGCTTGTAT
GCAGCAATGGCTGATGTCGCAGCAGCCTTGGCTGAATTAGAGCCTGGTTA
CATTGGTTTTATAAATAGATTAAGAAGGGCCGATTGCAGGCTAAAATACA
TTTGACTAGGCCGAGTCGAGTGCATTATTCCTCATGCCCTATGCTCGTCT
GCTCGAGTATTCTGCTGTCATGTTGTATCAACTATGCGTTTTGACACAGC
TTGTACCAGCCAGAGTTAGAACTGAGTCTCTCGTCCCCCGGCATCATTGC
ACACAAACAGATGCACGCCCCCCCCCCCCTTGCTGCTGCGCACAGGCTGC
TGCACGTCAGCCGCTGCCATGATGCGCCTGGCGTCAGCCATAGCGGTGGC
CCTGGCAGGCGCCGTCATCTTCGCTCTCAATGAGCTCTACTGGGGCCGCA
TGCCCGTACTCGAGTTCTCAACATACATGGCGGTGCTGCTGTTCTCGCTA
CTGGGGCTGGGAGCAGTGCTCAGCGAAAAGGGGCAGCTGGCGGTCTTTCC
GTCCGAACCAGAGGGGCCGGAGCCGGAGGTGGTGCAGAGCGATACTGCTG
ACAGGGTAGTGCTGGATCTCGATGCGGATGCTCTGGGCAGATTGAGCCCA
GAGGACACGAGCGCACCTCTGACGGACGAGCAATTAGGAGAGGAGATCAG
TAGGGAGCGCTCTCACACGCTCACGGAGAGGATCATACAGGGGATACACG
GGTGACAGGCGGCGCTGCTGCGTTCAGCGGCGTGTGCGCGGTGGCGGCAG
TGGCGGCGCTGCCCGGATGTCAAAATAGCTGTACATACGCACCCTGCATG
CGTGCATGCAGATAGATGTATACTAATAGTGCAGTCGTTCCTAGTCTCCT
GGACGTTGTTGCCGCTGCCGCCCTTCGTTTGCCTGCGGCCACAATGTGTG
CATGTACGCAATGGGGAGC
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Coding sequence (CDS) from alignment at Contig_62:457294..458662-

>mRNA_6529 ID=mRNA_6529|Name=jgi.p|Trimin1|350421|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_62:457294..458662- (Tribonema minus UTEX_B_3156 )
ATGATGCGCCTGGCGTCAGCCATAGCGGTGGCCCTGGCAGGCGCCGTCAT
CTTCGCTCTCAATGAGCTCTACTGGGGCCGCATGCCCGTACTCGAGTTCT
CAACATACATGGCGGTGCTGCTGTTCTCGCTACTGGGGCTGGGAGCAGTG
CTCAGCGAAAAGGGGCAGCTGGCGGTCTTTCCGTCCGAACCAGAGGGGCC
GGAGCCGGAGGTGGTGCAGAGCGATACTGCTGACAGGGTAGTGCTGGATC
TCGATGCGGATGCTCTGGGCAGATTGAGCCCAGAGGACACGAGCGCACCT
CTGACGGACGAGCAATTAGGAGAGGAGATCAGTAGGGAGCGCTCTCACAC
GCTCACGGAGAGGATCATACAGGGGATACACGGGTGA
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