Trimin1|350416|estExt_Genemark1.C_Ctg_620052 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350416
Unique Name	Trimin1\|350416\|estExt_Genemark1.C_Ctg_620052
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	205

Homology

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BLAST of jgi.p|Trimin1|350416 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 1.670e-147
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0

Query:    1 MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204
            MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT
Sbjct:    1 MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204

[Close]

BLAST of jgi.p|Trimin1|350416 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.190e-42
Identity = 79/201 (39.30%), Postives = 121/201 (60.20%), Query Frame = 0

Query:    5 PPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVV-ESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204
            PP+ +  G++ R  + + H+KS     II+KHVP F    FPP+A+Q+F+ F +AHRKGD  +L  L TE L+ ++K ++ +  +  G++   RAAF+L+   EPT VLQ+R   +K    K GWGQ+T +  + R++L VD +G EV+     +    +++T+GV E FF D A  WRLA++ E  A  PA A +   KT
Sbjct:   42 PPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEI-KSSKSRGAQ---RAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVTCRLCSERQLLVVDAKGNEVEAKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEF-AEAPAGATSATGKT 237

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350416 vs. uniprot

BLAST of jgi.p|Trimin1|350416 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YW25_9STRA	1.670e-147	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FKT9_ECTSI	2.190e-42	39.30	Tim44 domain-containing protein n=1 Tax=Ectocarpus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.240		coord: 25..194 e-value: 7.8E-18 score: 66.6
None	No IPR available	PANTHER	PTHR28554	39S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL	coord: 8..183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_62	contig	Contig_62:406889..408109 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350416	mRNA_6517	Tribonema minus UTEX_B_3156	mRNA	Contig_62 406862..408136 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350416|estExt_Genemark1.C_Ctg_620052 ID=Trimin1|350416|estExt_Genemark1.C_Ctg_620052|Name=jgi.p|Trimin1|350416|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIAD
QVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAA
FKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGR
EVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTN
VDKT*