mRNA_6517 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350416
Unique NamemRNA_6517
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350416 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 3.480e-147
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:   28 MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 639
            MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT
Sbjct:    1 MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204
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BLAST of jgi.p|Trimin1|350416 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 6.350e-44
Identity = 83/216 (38.43%), Postives = 128/216 (59.26%), Query Frame = 1 
Query:    1 IFDPFSFEDMAKR--PPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVV-ESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 639
            IFDP+ +     +  PP+ +  G++ R  + + H+KS     II+KHVP F    FPP+A+Q+F+ F +AHRKGD  +L  L TE L+ ++K ++ +  +  G++   RAAF+L+   EPT VLQ+R   +K    K GWGQ+T +  + R++L VD +G EV+     +    +++T+GV E FF D A  WRLA++ E  A  PA A +   KT
Sbjct:   27 IFDPYVYRGAGGKGLPPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEI-KSSKSRGAQ---RAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVTCRLCSERQLLVVDAKGNEVEAKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEF-AEAPAGATSATGKT 237
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350416 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YW25_9STRA3.480e-147100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FKT9_ECTSI6.350e-4438.43Tim44 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:406862..408136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350416|estExt_Genemark1.C_Ctg_620052
CAZyGT7
BRITEbr01610,ko00000,ko00001,ko01000,ko01003,ko03011
KEGG ReactionR07610,R07611
KEGG Pathwayko00513,ko01100,map00513,map01100
KEGG koko:K09657,ko:K17426
EC2.4.1.244
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
Preferred nameKRE29
Descriptionmitochondrial translation
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4599@1|root,KOG4599@2759|Eukaryota
Evalue3.59e-43
Seed ortholog2880.D7FKT9
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionTim44-like domain
Ec32 orthologEc-17_001350.1
TranscriptId350738
TrackFilteredModels1
ProteinId350416
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350416gene_6517Tribonema minus UTEX_B_3156 geneContig_62 406862..408136 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6517_2exon_6517_2Tribonema minus UTEX_B_3156 exonContig_62 406862..407084 -
exon_6517_1exon_6517_1Tribonema minus UTEX_B_3156 exonContig_62 407691..408136 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6517UTR3_6517Tribonema minus UTEX_B_3156 three_prime_UTRContig_62 406862..406888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6517CDS_6517Tribonema minus UTEX_B_3156 CDSContig_62 407691..408109 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6517UTR5_6517Tribonema minus UTEX_B_3156 five_prime_UTRContig_62 408110..408136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350416Trimin1|350416|estExt_Genemark1.C_Ctg_620052Tribonema minus UTEX_B_3156 polypeptideContig_62 406889..408109 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6517 ID=mRNA_6517|Name=jgi.p|Trimin1|350416|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=669bp|location=Sequence derived from alignment at Contig_62:406862..408136- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATATTCGACCCCTTTTCCTTCGAGGACATGGCCAAGCGCCCACCGGTGTA
CACGCTAGCAGGGCTGAAGCACCGGTTCACCGTGTACAAGGGGCACATGA
AGTCCAGCGCTGCGATCGCCATAATCAAGAAGCACGTACCAGGATTCTCC
CCCAAGACCTTTCCTCCCATCGCTGACCAAGTTTTCCAGTCCTTCATTGA
CGCGCACAGGAAGGGAGATCTGCCTTCCTTGTGCAACCTGGCCACTGAGG
GTCTTCACGACAACGTGAAGGCTGATGTGACCCGCATGGGACGGAAGCCG
GGTTCTGAGCCAAAGCCCCGCGCAGCGTTCAAACTGTTGCGCATGATGGA
GCCCACGTATGTGCTGCAGGTCAGGGCGGCGATGGAGAAGGGAAGCGGCG
GCAAACGCGGCTGGGGGCAGATGACTGTTCAATATGTAACAAGCAGGGAG
ATATTAGCAGTGGACCGCAGAGGCAGAGAGGTACAGCCGCCTCCAGGGGG
AAACAAAGTTGTGGAGAGCATCACAATGGGGGTCCTTGAAATTTTTTTCA
ATGATCCTGCGCACACGTGGCGACTGGCTATGCTGCACGAAGTTGGTGCA
ACAGGGCCAGCCGAGGCTCGCACTAATGTGGACAAAACCTAGCCAGCTAT
GTAGCTGTGCTCGCAGGAA
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protein sequence of jgi.p|Trimin1|350416

>Trimin1|350416|estExt_Genemark1.C_Ctg_620052 ID=Trimin1|350416|estExt_Genemark1.C_Ctg_620052|Name=jgi.p|Trimin1|350416|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
MAKRPPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIAD
QVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAA
FKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGR
EVQPPPGGNKVVESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTN
VDKT*
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mRNA from alignment at Contig_62:406862..408136-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6517 ID=mRNA_6517|Name=jgi.p|Trimin1|350416|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1275bp|location=Sequence derived from alignment at Contig_62:406862..408136- (Tribonema minus UTEX_B_3156 )
ATATTCGACCCCTTTTCCTTCGAGGACATGGCCAAGCGCCCACCGGTGTA
CACGCTAGCAGGGCTGAAGCACCGGTTCACCGTGTACAAGGGGCACATGA
AGTCCAGCGCTGCGATCGCCATAATCAAGAAGCACGTACCAGGATTCTCC
CCCAAGACCTTTCCTCCCATCGCTGACCAAGTTTTCCAGTCCTTCATTGA
CGCGCACAGGAAGGGAGATCTGCCTTCCTTGTGCAACCTGGCCACTGAGG
GTCTTCACGACAACGTGAAGGCTGATGTGACCCGCATGGGACGGAAGCCG
GGTTCTGAGCCAAAGCCCCGCGCAGCGTTCAAACTGTTGCGCATGATGGA
GCCCACGTATGTGCTGCAGGTCAGGGCGGCGATGGAGAAGGGAAGCGGCG
GCAAACGCGGCTGGGGGCAGATGACTGTTCAATATGTAACAAGCAGGTGA
GTTGTGTGCACTGTAGAGCACTTCGGGCAACGCTGGCACCATACATTCCT
TGTTGTGCATGTTGAGCATGTGGCAGCGAGGCGAACACCAGAGCCCATCA
GGTTTGACAAGACAAACTTAATCGCCTATTCCTACTGGCCCATTAGCTAT
GAGCCAAGCAGTGTGCAAGCTGACGCTGCATGAACATGGTCCATCTGCAT
GCTTGTGGCGCGACACGGGCAGGCCAACTCTGAATATTAAAAAGCAGACA
AGCCTTGATGCTATGTAGCAGCATTGGCAAGCCTTGATGCTATATATCAG
CATTTGCAACGGTCCGTTTGTAGCGCATTTCACTAGCAGTGGGCTCATGC
GGTGTTTGATGAGCACTGCTGCCAGCTTCTGTATGCTGTGACATTCTATT
AGCCATTGCGTTGTCCTTGTGTTCAAACCAACTGTAGAAAAACGCTGTTT
GATCCATCAGCGAACTCAACAACGCTGCACATCAGTTAATGGGTTGTGGC
TAGCAGTGTTTTGCACAAGAGTCAGCCTTGTCAGCCTTGTTGCCCCTGCT
AACAACTCTCAAACGTCATCAGCAGTGCTTCCTGCTCTTGTTGCCACTGC
AGGGAGATATTAGCAGTGGACCGCAGAGGCAGAGAGGTACAGCCGCCTCC
AGGGGGAAACAAAGTTGTGGAGAGCATCACAATGGGGGTCCTTGAAATTT
TTTTCAATGATCCTGCGCACACGTGGCGACTGGCTATGCTGCACGAAGTT
GGTGCAACAGGGCCAGCCGAGGCTCGCACTAATGTGGACAAAACCTAGCC
AGCTATGTAGCTGTGCTCGCAGGAA
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Coding sequence (CDS) from alignment at Contig_62:406862..408136-

>mRNA_6517 ID=mRNA_6517|Name=jgi.p|Trimin1|350416|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_62:406862..408136- (Tribonema minus UTEX_B_3156 )
ATGGCCAAGCGCCCACCGGTGTACACGCTAGCAGGGCTGAAGCACCGGTT
CACCGTGTACAAGGGGCACATGAAGTCCAGCGCTGCGATCGCCATAATCA
AGAAGCACGTACCAGGATTCTCCCCCAAGACCTTTCCTCCCATCGCTGAC
CAAGTTTTCCAGTCCTTCATTGACGCGCACAGGAAGGGAGATCTGCCTTC
CTTGTGCAACCTGGCCACTGAGGGTCTTCACGACAACGTGAAGGCTGATG
TGACCCGCATGGGACGGAAGCCGGGTTCTGAGCCAAAGCCCCGCGCAGCG
TTCAAACTGTTGCGCATGATGGAGCCCACGTATGTGCTGCAGGTCAGGGC
GGCGATGGAGAAGGGAAGCGGCGGCAAACGCGGCTGGGGGCAGATGACTG
TTCAATATGTAACAAGCAGGGAGATATTAGCAGTGGACCGCAGAGGCAGA
GAGGTACAGCCGCCTCCAGGGGGAAACAAAGTTGTGGAGAGCATCACAAT
GGGGGTCCTTGAAATTTTTTTCAATGATCCTGCGCACACGTGGCGACTGG
CTATGCTGCACGAAGTTGGTGCAACAGGGCCAGCCGAGGCTCGCACTAAT
GTGGACAAAACCTAG
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