Trimin1|350398|estExt_Genemark1.C_Ctg_620020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350398
Unique NameTrimin1|350398|estExt_Genemark1.C_Ctg_620020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length759
Homology
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BLAST of jgi.p|Trimin1|350398 vs. uniprot
Match: A0A835YNJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ5_9STRA)

HSP 1 Score: 899 bits (2324), Expect = 0.000e+0
Identity = 559/559 (100.00%), Postives = 559/559 (100.00%), Query Frame = 0 
Query:    1 MALPIFNPATDLLMPDADEDEALAPVDDVDAAFMAQIAAATGSGSTGDDSQDAAADEATSDPRGRMEVVELMRAQGVAPRVSTYKALLRSWRGARDGQAAFVVTVVGAMAAARVAPDLELLEMGTAMCARVGGVTEALYFLGQASVLGYAPSEAMYEACVSALAAGGRWQRAADLIRDGEAALRRPLRAESRTLVIRAAGRAGQWRAAVLTLQEMQAGRDRGWREESWPTSQTYAAAISACALSGEWQRGVELLEGMLKGPHALPPSLLAFNAACWRSTXXXXXXXXXXXXXXXXXXXAMSACERARQWRKALQLLKQAEGLGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAGDDAMAFKKAIELLDEMRRRGLKADKLLDVRRTGLEADGFSYSSAIKACARAKDSAKALQLLNQATRPAMCLDASALRPSPVNPLMMHYMNLQSAPSAFGASAYSPPPSPGTLLGAPHVLTAVPVACSGAAAHVQMRVTSVAIDVVAYTSAMDACAATGRWQEGIELLDEMRSKGLQPNERT 559
            MALPIFNPATDLLMPDADEDEALAPVDDVDAAFMAQIAAATGSGSTGDDSQDAAADEATSDPRGRMEVVELMRAQGVAPRVSTYKALLRSWRGARDGQAAFVVTVVGAMAAARVAPDLELLEMGTAMCARVGGVTEALYFLGQASVLGYAPSEAMYEACVSALAAGGRWQRAADLIRDGEAALRRPLRAESRTLVIRAAGRAGQWRAAVLTLQEMQAGRDRGWREESWPTSQTYAAAISACALSGEWQRGVELLEGMLKGPHALPPSLLAFNAACWRSTXXXXXXXXXXXXXXXXXXXAMSACERARQWRKALQLLKQAEGLGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAGDDAMAFKKAIELLDEMRRRGLKADKLLDVRRTGLEADGFSYSSAIKACARAKDSAKALQLLNQATRPAMCLDASALRPSPVNPLMMHYMNLQSAPSAFGASAYSPPPSPGTLLGAPHVLTAVPVACSGAAAHVQMRVTSVAIDVVAYTSAMDACAATGRWQEGIELLDEMRSKGLQPNERT
Sbjct:    1 MALPIFNPATDLLMPDADEDEALAPVDDVDAAFMAQIAAATGSGSTGDDSQDAAADEATSDPRGRMEVVELMRAQGVAPRVSTYKALLRSWRGARDGQAAFVVTVVGAMAAARVAPDLELLEMGTAMCARVGGVTEALYFLGQASVLGYAPSEAMYEACVSALAAGGRWQRAADLIRDGEAALRRPLRAESRTLVIRAAGRAGQWRAAVLTLQEMQAGRDRGWREESWPTSQTYAAAISACALSGEWQRGVELLEGMLKGPHALPPSLLAFNAACWRSTXXXXXXXXXXXXXXXXXXXAMSACERARQWRKALQLLKQAEGLGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAGDDAMAFKKAIELLDEMRRRGLKADKLLDVRRTGLEADGFSYSSAIKACARAKDSAKALQLLNQATRPAMCLDASALRPSPVNPLMMHYMNLQSAPSAFGASAYSPPPSPGTLLGAPHVLTAVPVACSGAAAHVQMRVTSVAIDVVAYTSAMDACAATGRWQEGIELLDEMRSKGLQPNERT 559
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350398 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNJ5_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 326..374
e-value: 1.0E-10
score: 41.6
coord: 521..567
e-value: 4.4E-10
score: 39.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 594..622
e-value: 0.64
score: 10.4
coord: 628..655
e-value: 6.3E-4
score: 19.8
coord: 384..399
e-value: 1.1
score: 9.7
coord: 417..441
e-value: 0.37
score: 11.1
coord: 295..323
e-value: 0.25
score: 11.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 662..711
e-value: 1.3E-8
score: 34.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 667..701
e-value: 6.2E-4
score: 17.8
coord: 628..655
e-value: 5.8E-4
score: 17.9
coord: 329..362
e-value: 2.2E-7
score: 28.6
coord: 594..626
e-value: 5.4E-4
score: 18.0
coord: 703..735
e-value: 2.1E-5
score: 22.4
coord: 295..328
e-value: 7.6E-4
score: 17.5
coord: 559..588
e-value: 2.9E-4
score: 18.8
coord: 523..557
e-value: 1.2E-7
score: 29.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 591..625
score: 9.426776
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 521..555
score: 12.824779
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 556..590
score: 9.876189
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 700..734
score: 10.500983
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 362..401
score: 9.251395
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 626..660
score: 10.226951
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 665..699
score: 9.536388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 9.569272
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 327..361
score: 12.375365
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 508..606
e-value: 2.1E-23
score: 84.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 282..455
e-value: 9.4E-35
score: 122.4
coord: 30..190
e-value: 4.4E-11
score: 44.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 191..281
e-value: 8.2E-8
score: 34.0
coord: 607..758
e-value: 9.5E-33
score: 115.9
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 66..402
coord: 512..755
coord: 195..443

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:116340..128316 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350398mRNA_6472Tribonema minus UTEX_B_3156 mRNAContig_62 116340..128316 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350398|estExt_Genemark1.C_Ctg_620020 ID=Trimin1|350398|estExt_Genemark1.C_Ctg_620020|Name=jgi.p|Trimin1|350398|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=759bp
MALPIFNPATDLLMPDADEDEALAPVDDVDAAFMAQIAAATGSGSTGDDS
QDAAADEATSDPRGRMEVVELMRAQGVAPRVSTYKALLRSWRGARDGQAA
FVVTVVGAMAAARVAPDLELLEMGTAMCARVGGVTEALYFLGQASVLGYA
PSEAMYEACVSALAAGGRWQRAADLIRDGEAALRRPLRAESRTLVIRAAG
RAGQWRAAVLTLQEMQAGRDRGWREESWPTSQTYAAAISACALSGEWQRG
VELLEGMLKGPHALPPSLLAFNAACWRSTEGMLRGPHALPPSLLAFNAAM
SACERARQWRKALQLLKQAEGLGLKPDVITYNTAISACAKGGQWNMALGL
LATMRNQGVRPDRISYNAAISACASVAGDDAMAFKKAIELLDEMRRRGLK
ADKLLDVRRTGLEADGFSYSSAIKACARAKDSAKALQLLNQATRPAMCLD
ASALRPSPVNPLMMHYMNLQSAPSAFGASAYSPPPSPGTLLGAPHVLTAV
PVACSGAAAHVQMRVTSVAIDVVAYTSAMDACAATGRWQEGIELLDEMRS
KGLQPNERTYRAAIAACGKGGQWQRVLDLLASMRSKGFAIAAQTFNSAVA
ACEKGGQHAHALALMQQMRAQGTEPDLFTYGSAINACSTGGHWKEALALL
EEMRSTVSGPALQPNVICYTAAITAAGRGGEAQLALDLLAQMRADGLTPD
AIAFNAVINACRRGGLYHAALETLDAMRAAGHAPDLATITDMVTALEEGG
LREAADAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf