mRNA_6594 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169280
Unique NamemRNA_6594
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|169280 vs. uniprot
Match: A0A835YMK9_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 7.550e-40
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIASFGPKGGRRTHC 183
            KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIASFGPKGGRRTHC
Sbjct:    1 KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIASFGPKGGRRTHC 61
[Close]
BLAST of jgi.p|Trimin1|169280 vs. uniprot
Match: A0A835YWI0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.640e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIASFGPKGGRRTHC 183
            K+CR  +C   P F  P  G QWC KH+K GMVDV++ RC     +   SFG +G ++  C
Sbjct:    1 KECREASCTTAPKFNVPGAGGQWCNKHKKVGMVDVLNTRCQCG--LARPSFGLEGDKQPTC 59
[Close]
BLAST of jgi.p|Trimin1|169280 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.530e-5
Identity = 20/55 (36.36%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIASFGPKG 165
            + C+ P C   P++       ++C +H K+GM++V++R+C H G +K ASFG  G
Sbjct:  226 RSCQEPECTTWPSYGARLKKAEFCKRHAKQGMINVVTRKCSHPGCIKSASFGKHG 280
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169280 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YMK9_9STRA7.550e-40100.00EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835YWI0_9STRA2.640e-742.62Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5J913_9PHAE5.530e-536.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:770158..770553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169280|e_gw1.62.183.1
Hectar predicted targeting categoryother localisation
TranscriptId169602
TrackFilteredModels1
ProteinId169280
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169280gene_6594Tribonema minus UTEX_B_3156 geneContig_62 770158..770553 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6594_1exon_6594_1Tribonema minus UTEX_B_3156 exonContig_62 770158..770553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6594CDS_6594Tribonema minus UTEX_B_3156 CDSContig_62 770158..770553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169280Trimin1|169280|e_gw1.62.183.1Tribonema minus UTEX_B_3156 polypeptideContig_62 770158..770553 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6594 ID=mRNA_6594|Name=jgi.p|Trimin1|169280|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_62:770158..770553+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCAGTGCAGGGTGCCAACGTGTGCAAAGCTGCCAACCTTCACTTATCC
CGACGTGGGAGTGCAGTGGTGCTTCAAGCACCAAAAAAAGGGCATGGTTG
ACGTTATCAGCAGACGTTGCATGCATGCCGGACGCATGAAAATCGCTAGC
TTCGGTCCCAAAGGCGGGCGCCGCACTCACTGTGCCGAACATGCCCAAGA
TGGCATGTTATGCACCGTCAACAAACGCTGCGACCACCCCGGCTGCCTGA
AGCAACCTTCGTTCGGGTATGACAGGGGTCGGGCAATCAATTTCTCAGAG
CATGCGATGCAGGGGATGCGAGACGTGGTCAGCAAACAATGCGCAGATCC
CAATTGCAGAGAACAAGTTTGTTACGGGGTGGTCAGGGGGCACTAG
back to top

protein sequence of jgi.p|Trimin1|169280

>Trimin1|169280|e_gw1.62.183.1 ID=Trimin1|169280|e_gw1.62.183.1|Name=jgi.p|Trimin1|169280|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
KQCRVPTCAKLPTFTYPDVGVQWCFKHQKKGMVDVISRRCMHAGRMKIAS
FGPKGGRRTHCAEHAQDGMLCTVNKRCDHPGCLKQPSFGYDRGRAINFSE
HAMQGMRDVVSKQCADPNCREQVCYGVVRGH*
back to top

mRNA from alignment at Contig_62:770158..770553+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6594 ID=mRNA_6594|Name=jgi.p|Trimin1|169280|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_62:770158..770553+ (Tribonema minus UTEX_B_3156 )
AAGCAGTGCAGGGTGCCAACGTGTGCAAAGCTGCCAACCTTCACTTATCC
CGACGTGGGAGTGCAGTGGTGCTTCAAGCACCAAAAAAAGGGCATGGTTG
ACGTTATCAGCAGACGTTGCATGCATGCCGGACGCATGAAAATCGCTAGC
TTCGGTCCCAAAGGCGGGCGCCGCACTCACTGTGCCGAACATGCCCAAGA
TGGCATGTTATGCACCGTCAACAAACGCTGCGACCACCCCGGCTGCCTGA
AGCAACCTTCGTTCGGGTATGACAGGGGTCGGGCAATCAATTTCTCAGAG
CATGCGATGCAGGGGATGCGAGACGTGGTCAGCAAACAATGCGCAGATCC
CAATTGCAGAGAACAAGTTTGTTACGGGGTGGTCAGGGGGCACTAG
back to top

Coding sequence (CDS) from alignment at Contig_62:770158..770553+

>mRNA_6594 ID=mRNA_6594|Name=jgi.p|Trimin1|169280|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_62:770158..770553+ (Tribonema minus UTEX_B_3156 )
AAGCAGTGCAGGGTGCCAACGTGTGCAAAGCTGCCAACCTTCACTTATCC
CGACGTGGGAGTGCAGTGGTGCTTCAAGCACCAAAAAAAGGGCATGGTTG
ACGTTATCAGCAGACGTTGCATGCATGCCGGACGCATGAAAATCGCTAGC
TTCGGTCCCAAAGGCGGGCGCCGCACTCACTGTGCCGAACATGCCCAAGA
TGGCATGTTATGCACCGTCAACAAACGCTGCGACCACCCCGGCTGCCTGA
AGCAACCTTCGTTCGGGTATGACAGGGGTCGGGCAATCAATTTCTCAGAG
CATGCGATGCAGGGGATGCGAGACGTGGTCAGCAAACAATGCGCAGATCC
CAATTGCAGAGAACAAGTTTGTTACGGGGTGGTCAGGGGGCACTAG
back to top