mRNA_6580 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|169277
Unique Name	mRNA_6580
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|169277 vs. uniprot
Match: A0A835YW66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW66_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.370e-12
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:    1 MLQFPQALHSLYITGCPALTALPESICKLAMLKVLVVK 114
            MLQFPQALHSLYITGCPALTALPESICKLAMLKVLVVK
Sbjct:    1 MLQFPQALHSLYITGCPALTALPESICKLAMLKVLVVK 38

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|169277 vs. uniprot

BLAST of jgi.p|Trimin1|169277 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YW66_9STRA	2.370e-12	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_62	contig	Contig_62:727877..728836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|169277\|e_gw1.62.153.1
Hectar predicted targeting category	other localisation
TranscriptId	169599
Track	FilteredModels1
ProteinId	169277

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|169277	gene_6580	Tribonema minus UTEX_B_3156	gene	Contig_62 727877..728836 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6580_1	exon_6580_1	Tribonema minus UTEX_B_3156	exon	Contig_62 727877..728836 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6580	CDS_6580	Tribonema minus UTEX_B_3156	CDS	Contig_62 727877..728836 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|169277	Trimin1\|169277\|e_gw1.62.153.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_62 727877..728836 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_62:727877..728836+
coding sequence from alignment at Contig_62:727877..728836+

spliced messenger RNA

>mRNA_6580 ID=mRNA_6580|Name=jgi.p|Trimin1|169277|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_62:727877..728836+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAATTCCCTCAGGCGCTGCATTCGCTCTACATCACCGGGTGCCC
AGCCCTCACCGCGCTGCCGGAAAGCATCTGCAAGCTGGCCATGCTGAAAG
TATTAGTAGTGAAGACATGCAGCTCCCTCACCGCACTGCCGACGAGCATC
AGCAAGCTGGCGGCTTTGGAAAGACTGACCATCGATGAGTGCGAGTCTCT
CACCGCGCTGCCAAACAGCATCGGGCAGCTGGCAGCGTTGGAGAGGCTTC
ATGTCAGAGATTGCGAGGGGCTAAACGCGCTGCCAGACAGCATCGGCCAG
CTGGCGGCGTTGAAGTCGCTTCGTGTTGATGGGAGCGAAGGCCTCACAGC
GCTGCCGGACAGCATCGGCCAGCTGCCGGCATTATTGACACTTATTCTCA
GTATGTGCGACGGCCTCACGGCGCTGCCAAACAGCATCGGCCAGCTGGCA
GAGTTACAGACACTTTGTGTCCTAGATTGCGAGGGGCTGACTGAGCTGCC
ACACAGCATCGGCCAGCTGGACGCGCTGGAGACGCTTCATGTCTTTGGAT
GCGAGGGCCTCACTACTCTGCCGGACAGCACAGGCCAGCTGCTGGCGCTG
GAGACACTGATCGTCTCTGGTTGCAGGGGCCTCACAGCGCTGCCGAACAG
CATCGGGGAGCTGGCGGAGCTGCGGAAGCTCGAAGTCAAGGACTGCGAGG
GCCTCACTGCTCTGCCAGACAGCATCGGACAGCTAGCGGCGCTGGAGACA
CTGATCGTCTCTGGGTGCAGGTGCCTCACAGAGCTGCCAAACAGCATCGG
GGAGCTGGCGGCGCTGCGGAAGCTCGAAGTCAAGGATTGCGAGGGCCTCA
CTGCGCTGCCGGAGAGCATATGTCAGCTGCTGGCGCTGCAGCACATCGAT
ATCACAGGCACCCGCTGCACAAGGGTCAACGTGCGCGGTTGCCTCATTAT
TTGCCGGTGA

protein sequence of jgi.p|Trimin1|169277

>Trimin1|169277|e_gw1.62.153.1 ID=Trimin1|169277|e_gw1.62.153.1|Name=jgi.p|Trimin1|169277|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp
MLQFPQALHSLYITGCPALTALPESICKLAMLKVLVVKTCSSLTALPTSI
SKLAALERLTIDECESLTALPNSIGQLAALERLHVRDCEGLNALPDSIGQ
LAALKSLRVDGSEGLTALPDSIGQLPALLTLILSMCDGLTALPNSIGQLA
ELQTLCVLDCEGLTELPHSIGQLDALETLHVFGCEGLTTLPDSTGQLLAL
ETLIVSGCRGLTALPNSIGELAELRKLEVKDCEGLTALPDSIGQLAALET
LIVSGCRCLTELPNSIGELAALRKLEVKDCEGLTALPESICQLLALQHID
ITGTRCTRVNVRGCLIICR*

mRNA from alignment at Contig_62:727877..728836+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6580 ID=mRNA_6580|Name=jgi.p|Trimin1|169277|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_62:727877..728836+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAATTCCCTCAGGCGCTGCATTCGCTCTACATCACCGGGTGCCC
AGCCCTCACCGCGCTGCCGGAAAGCATCTGCAAGCTGGCCATGCTGAAAG
TATTAGTAGTGAAGACATGCAGCTCCCTCACCGCACTGCCGACGAGCATC
AGCAAGCTGGCGGCTTTGGAAAGACTGACCATCGATGAGTGCGAGTCTCT
CACCGCGCTGCCAAACAGCATCGGGCAGCTGGCAGCGTTGGAGAGGCTTC
ATGTCAGAGATTGCGAGGGGCTAAACGCGCTGCCAGACAGCATCGGCCAG
CTGGCGGCGTTGAAGTCGCTTCGTGTTGATGGGAGCGAAGGCCTCACAGC
GCTGCCGGACAGCATCGGCCAGCTGCCGGCATTATTGACACTTATTCTCA
GTATGTGCGACGGCCTCACGGCGCTGCCAAACAGCATCGGCCAGCTGGCA
GAGTTACAGACACTTTGTGTCCTAGATTGCGAGGGGCTGACTGAGCTGCC
ACACAGCATCGGCCAGCTGGACGCGCTGGAGACGCTTCATGTCTTTGGAT
GCGAGGGCCTCACTACTCTGCCGGACAGCACAGGCCAGCTGCTGGCGCTG
GAGACACTGATCGTCTCTGGTTGCAGGGGCCTCACAGCGCTGCCGAACAG
CATCGGGGAGCTGGCGGAGCTGCGGAAGCTCGAAGTCAAGGACTGCGAGG
GCCTCACTGCTCTGCCAGACAGCATCGGACAGCTAGCGGCGCTGGAGACA
CTGATCGTCTCTGGGTGCAGGTGCCTCACAGAGCTGCCAAACAGCATCGG
GGAGCTGGCGGCGCTGCGGAAGCTCGAAGTCAAGGATTGCGAGGGCCTCA
CTGCGCTGCCGGAGAGCATATGTCAGCTGCTGGCGCTGCAGCACATCGAT
ATCACAGGCACCCGCTGCACAAGGGTCAACGTGCGCGGTTGCCTCATTAT
TTGCCGGTGA

Coding sequence (CDS) from alignment at Contig_62:727877..728836+

>mRNA_6580 ID=mRNA_6580|Name=jgi.p|Trimin1|169277|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_62:727877..728836+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAATTCCCTCAGGCGCTGCATTCGCTCTACATCACCGGGTGCCC
AGCCCTCACCGCGCTGCCGGAAAGCATCTGCAAGCTGGCCATGCTGAAAG
TATTAGTAGTGAAGACATGCAGCTCCCTCACCGCACTGCCGACGAGCATC
AGCAAGCTGGCGGCTTTGGAAAGACTGACCATCGATGAGTGCGAGTCTCT
CACCGCGCTGCCAAACAGCATCGGGCAGCTGGCAGCGTTGGAGAGGCTTC
ATGTCAGAGATTGCGAGGGGCTAAACGCGCTGCCAGACAGCATCGGCCAG
CTGGCGGCGTTGAAGTCGCTTCGTGTTGATGGGAGCGAAGGCCTCACAGC
GCTGCCGGACAGCATCGGCCAGCTGCCGGCATTATTGACACTTATTCTCA
GTATGTGCGACGGCCTCACGGCGCTGCCAAACAGCATCGGCCAGCTGGCA
GAGTTACAGACACTTTGTGTCCTAGATTGCGAGGGGCTGACTGAGCTGCC
ACACAGCATCGGCCAGCTGGACGCGCTGGAGACGCTTCATGTCTTTGGAT
GCGAGGGCCTCACTACTCTGCCGGACAGCACAGGCCAGCTGCTGGCGCTG
GAGACACTGATCGTCTCTGGTTGCAGGGGCCTCACAGCGCTGCCGAACAG
CATCGGGGAGCTGGCGGAGCTGCGGAAGCTCGAAGTCAAGGACTGCGAGG
GCCTCACTGCTCTGCCAGACAGCATCGGACAGCTAGCGGCGCTGGAGACA
CTGATCGTCTCTGGGTGCAGGTGCCTCACAGAGCTGCCAAACAGCATCGG
GGAGCTGGCGGCGCTGCGGAAGCTCGAAGTCAAGGATTGCGAGGGCCTCA
CTGCGCTGCCGGAGAGCATATGTCAGCTGCTGGCGCTGCAGCACATCGAT
ATCACAGGCACCCGCTGCACAAGGGTCAACGTGCGCGGTTGCCTCATTAT
TTGCCGGTGA