mRNA_6554 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169256
Unique NamemRNA_6554
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A836C9M0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M0_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.830e-64
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRKPRPACNTWSGGSL 285
            CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRKPRPACNTWSGGSL
Sbjct:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRKPRPACNTWSGGSL 95
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A835YI85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI85_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.070e-27
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRKPRPA 258
            C+YSGLPVKFAP S+WQASIERLN+ + YI+ NS LCALEFN  A WT AKAKYA THTD  DTAT+ A V +ALS P  +  RP+
Sbjct:  258 CVYSGLPVKFAPMSDWQASIERLNDNEDYIVHNSTLCALEFNVRAGWTVAKAKYAATHTDSVDTATVAAVVHKALSTPTTKHKRPS 343
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A836CFM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.940e-27
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRK 246
            CIYSGLPVKF   S+WQAS+ERLNN   Y++ NSALCALEFN  A WT AKA YA THT+  DTAT+ ANVREALS P  ++
Sbjct:  315 CIYSGLPVKFERMSDWQASLERLNNDDDYLVGNSALCALEFNVAAGWTVAKAMYAATHTNSVDTATLEANVREALSKPTSKR 396
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A835Z7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.150e-26
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIP 234
            C+YSGLPV F P S+WQASIERLN+ + Y+++NSALCALEFN  A WT AKA+YA THTD  D AT+ ANVREAL  P
Sbjct:  536 CVYSGLPVTFTPMSDWQASIERLNDDEDYLVENSALCALEFNVRAGWTVAKARYAATHTDSVDAATVEANVREALCKP 613
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A835YVG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVG1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.490e-25
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALS 228
            CIYSGLPV FA  ++ QASIERL++ + Y ++NSALCALEFNTVA WTAAKAKYA THTD  D A + AN+RE LS
Sbjct:   38 CIYSGLPVNFAMMTDSQASIERLDDQEDYFVENSALCALEFNTVAGWTAAKAKYAATHTDSVDAAALNANLRETLS 113
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A835YK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK65_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.530e-25
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALS 228
            CIYSGLPV FAP S+WQASIERLNN + Y I NSALC LEFN  A WTAAKA YA THTD   TAT++  VREALS
Sbjct:  534 CIYSGLPVNFAPMSDWQASIERLNNDEDYTISNSALCVLEFNVAAGWTAAKAAYAATHTDSVHTATVQTIVREALS 609
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A835YXZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.040e-24
Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRKP 249
            CIYSGLPV FA  ++WQASI RL+N   Y+++NSALCALEFN  A WTAAKAKYA THTD  D AT+  NV EALS    RKP
Sbjct:   91 CIYSGLPVNFAMMTHWQASIVRLDNNDDYLVNNSALCALEFNVRAGWTAAKAKYAATHTDSVDNATVEDNVCEALSKRTIRKP 173
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A836CG03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG03_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.470e-23
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKGRKP 249
            C+YSG+PV FAP S++QASIERLN+ + Y+++N+ALCALEFN  A W+ AK KYA THTD  +  T+ ANVREAL  P   +P
Sbjct:  406 CVYSGIPVTFAPMSDFQASIERLNDDEDYLVENTALCALEFNVRAGWSVAKVKYAATHTDRVEITTVEANVREALIKPTSYRP 488
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A836CFZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.260e-22
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIP--KGRKPRPACNTWSGG 279
            CIYSGLPV F+  S+WQAS+ERL++   Y + N ALCALEFN  A WTAAKAKYA THTD  + AT+ AN+REAL  P  K R  R       GG
Sbjct:  600 CIYSGLPVNFSMMSDWQASLERLDDNIDYRVANCALCALEFNVAAGWTAAKAKYAATHTDSIEPATVEANMREALLQPPKKRRAARRLFQREEGG 694
[Close]
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Match: A0A835YM24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM24_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.840e-22
Identity = 53/87 (60.92%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAAKAKYAETHTDIADTATMRANVREALSIPKG--RKPRP 255
            C+YSGLPV FAP S+WQASIER+ + + Y + NSAL ALEFN  A WT AKA+YA THTD  DTA + A  REALS P    R  RP
Sbjct:  682 CVYSGLPVTFAPMSDWQASIERIRDDEDYTVANSALSALEFNVRAGWTVAKARYAATHTDRVDTAIVEAVAREALSKPTNQHRAARP 768
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169256 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836C9M0_9STRA2.830e-64100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI85_9STRA1.070e-2766.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFM0_9STRA6.940e-2767.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7X8_9STRA5.150e-2667.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVG1_9STRA4.490e-2568.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK65_9STRA4.530e-2572.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXZ2_9STRA1.040e-2466.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG03_9STRA3.470e-2359.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFZ5_9STRA4.260e-2257.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YM24_9STRA5.840e-2260.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:624965..625252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169256|e_gw1.62.91.1
Hectar predicted targeting categoryother localisation
TranscriptId169578
TrackFilteredModels1
ProteinId169256
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169256gene_6554Tribonema minus UTEX_B_3156 geneContig_62 624965..625252 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6554_1exon_6554_1Tribonema minus UTEX_B_3156 exonContig_62 624965..625252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6554CDS_6554Tribonema minus UTEX_B_3156 CDSContig_62 624965..625252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169256Trimin1|169256|e_gw1.62.91.1Tribonema minus UTEX_B_3156 polypeptideContig_62 624965..625252 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6554 ID=mRNA_6554|Name=jgi.p|Trimin1|169256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_62:624965..625252- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCATTTATAGCGGGCTTCCTGTGAAATTTGCTCCATTCTCTAATTGGCA
GGCGTCCATAGAGCGGCTCAACAACGCCAAGTACTACATTATTGACAATA
GCGCTCTTTGCGCACTTGAATTCAATACGGTCGCTTGTTGGACTGCAGCA
AAGGCGAAGTACGCAGAGACACACACTGACATTGCAGACACCGCCACTAT
GAGGGCTAATGTGCGCGAAGCGCTCTCCATACCCAAAGGACGCAAACCCC
GCCCCGCGTGCAACACATGGAGTGGTGGGTCACTCTGA
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protein sequence of jgi.p|Trimin1|169256

>Trimin1|169256|e_gw1.62.91.1 ID=Trimin1|169256|e_gw1.62.91.1|Name=jgi.p|Trimin1|169256|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
CIYSGLPVKFAPFSNWQASIERLNNAKYYIIDNSALCALEFNTVACWTAA
KAKYAETHTDIADTATMRANVREALSIPKGRKPRPACNTWSGGSL*
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mRNA from alignment at Contig_62:624965..625252-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6554 ID=mRNA_6554|Name=jgi.p|Trimin1|169256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_62:624965..625252- (Tribonema minus UTEX_B_3156 )
TGCATTTATAGCGGGCTTCCTGTGAAATTTGCTCCATTCTCTAATTGGCA
GGCGTCCATAGAGCGGCTCAACAACGCCAAGTACTACATTATTGACAATA
GCGCTCTTTGCGCACTTGAATTCAATACGGTCGCTTGTTGGACTGCAGCA
AAGGCGAAGTACGCAGAGACACACACTGACATTGCAGACACCGCCACTAT
GAGGGCTAATGTGCGCGAAGCGCTCTCCATACCCAAAGGACGCAAACCCC
GCCCCGCGTGCAACACATGGAGTGGTGGGTCACTCTGA
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Coding sequence (CDS) from alignment at Contig_62:624965..625252-

>mRNA_6554 ID=mRNA_6554|Name=jgi.p|Trimin1|169256|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_62:624965..625252- (Tribonema minus UTEX_B_3156 )
TGCATTTATAGCGGGCTTCCTGTGAAATTTGCTCCATTCTCTAATTGGCA
GGCGTCCATAGAGCGGCTCAACAACGCCAAGTACTACATTATTGACAATA
GCGCTCTTTGCGCACTTGAATTCAATACGGTCGCTTGTTGGACTGCAGCA
AAGGCGAAGTACGCAGAGACACACACTGACATTGCAGACACCGCCACTAT
GAGGGCTAATGTGCGCGAAGCGCTCTCCATACCCAAAGGACGCAAACCCC
GCCCCGCGTGCAACACATGGAGTGGTGGGTCACTCTGA
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