mRNA_6571 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169122
Unique NamemRNA_6571
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA)

HSP 1 Score: 249 bits (635), Expect = 6.740e-84
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MLSDCIYNGECDGSAHCVRVSDIVGSCECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVELEQM 348
            MLSDCIYNGECDGSAHCVRVSDIVGSCECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVELEQM
Sbjct:    1 MLSDCIYNGECDGSAHCVRVSDIVGSCECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVELEQM 116
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A835Z690_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z690_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.810e-46
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:   79 CECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            CEC+TGYVS DS  C+Y QKSELV FLLSFFV ++GADWFYLA GDAGYIV GVFKL+  GGFG+WWL+DWIRILA AFPDGNGV L
Sbjct:    1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 87
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.040e-43
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:   10 DCIYNGECDGSAHCVRVSDIVGSCECNTGYVSTDSLQ-CNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            DC+Y+G+C   A C R S+  G CEC+ GY++ +    C+Y QKS+L TFL+SFFVG+LG DWFYLA G+  YIVAGV KLI  GGFGIWW++D+IR++ NAFPDGN + L
Sbjct:   20 DCLYDGQCPQHASCYRFSETEGVCECDGGYITREPYPPCDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPL 130
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A816GSD5_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816GSD5_9BILA)

HSP 1 Score: 127 bits (318), Expect = 2.850e-35
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    7 SDCIYNGECDGSAHCVRVSDIVGSCECNT-GYVSTDSLQ-CNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVELE 342
            SDC  NG C  S +         +C C T GYV+ DS + C Y QK +LV FLLSF VG  GADWFYLA G+ GYI AGVFKL+  GG GIW L+DWIR+L ++FPDG GV L+
Sbjct:   33 SDCGSNGVCSTSTY---------TCNCTTAGYVTVDSSKPCAYQQKKKLVAFLLSFLVGVFGADWFYLAAGNGGYIAAGVFKLLTFGGLGIWALVDWIRVLTDSFPDGQGVSLQ 137
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.670e-35
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   79 CECNTGYVSTD----SLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            CEC+  Y++ +    +  CNY QKS+L TFL+SFFVG LG DWFYLA G+  YIVAGV KLI  GGFGIWWL+D+IR+L NAFPDGN V L
Sbjct:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 91
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A820KW49_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820KW49_9BILA)

HSP 1 Score: 125 bits (315), Expect = 8.900e-35
Identity = 64/113 (56.64%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    7 SDCIYNGECDGSAHCVRVSDIVGSCECNTGYV-STDSLQ-CNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            SDC+  G CD        +    SC CN G+  S D  Q C Y QKS+L  FLLSFF G LGADWFYL+ G+ GYI AGVFKL+  GG GIWWL+DWIR+L N+F DG GV L
Sbjct:   34 SDCVQ-GVCD-------TNKTTSSCICNRGWTFSRDGFQRCTYQQKSKLAAFLLSFFTGGLGADWFYLSVGNGGYIAAGVFKLLTLGGLGIWWLVDWIRVLTNSFLDGQGVAL 138
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI)

HSP 1 Score: 125 bits (314), Expect = 9.400e-35
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:   22 NGECDGSAHCVRVSDIVGSCECNTGYVST--DSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            N  C+       V++    C+C+ G++++   +  CNY QKS+L +FLLSFF+G  GADW+YL+ G+ GYI   +FK++  GGFGIWWL+DWIRIL NAFPDGNG  L
Sbjct:   21 NDICNHGQLISTVNETEFDCKCDRGWINSKDQTNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A814Q567_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814Q567_ADIRI)

HSP 1 Score: 125 bits (313), Expect = 1.690e-34
Identity = 60/111 (54.05%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    7 SDCIYNGECDGSAHCVRVSDIVGSCECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            S C+ + +C         +  V  C     Y    + QC+Y QKS+L  FLLSFF+G LGADWFYL+ G+AGYIVAGVFKL+  GG GIWWL+DWIRIL N+F DG GV L
Sbjct:   26 SPCVTSADCLQGVCNTNTTPAVCICHRGWTYGRDGATQCSYQQKSKLAAFLLSFFLGGLGADWFYLSVGNAGYIVAGVFKLLTLGGIGIWWLVDWIRILTNSFLDGQGVGL 136
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A818TWT8_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A818TWT8_9BILA)

HSP 1 Score: 124 bits (312), Expect = 2.390e-34
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    4 LSDCIYNGECDGSAHCVRVSDIVGSCECNTGY--VSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            L+ C  + +C G   C   +     C CN G+      S QC Y Q+S+L  FLLSFF+G LGADWFYL+ G+AGYIVAGVFKL+  GG GIWWL+DWIRIL N+F DG GV L
Sbjct:   25 LTPCTTSTDC-GQGIC-NTNTTPALCICNRGWSLARDGSNQCTYQQRSKLAAFLLSFFLGGLGADWFYLSVGNAGYIVAGVFKLLTLGGIGIWWLVDWIRILTNSFLDGQGVGL 136
[Close]
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Match: A0A819MKF4_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A819MKF4_9BILA)

HSP 1 Score: 124 bits (310), Expect = 5.260e-34
Identity = 63/113 (55.75%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    7 SDCIYNGECDGSAHCVRVSDIVGSCECNTGYV--STDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 339
            SDC+  G CD        +  +  C CN G+      S +C Y QKS+L  FLLSFF G LGADWFYL+ G+ GYI AGVFKL+  GG GIWWL+DWIRIL NAF DG GV L
Sbjct:   35 SDCVQ-GICD-------TNRTIPVCSCNQGWTFPRDGSDRCTYQQKSKLAAFLLSFFAGGLGADWFYLSVGNGGYIAAGVFKLLTLGGIGIWWLVDWIRILTNAFLDGQGVAL 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9M7_9STRA6.740e-84100.00TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z690_9STRA1.810e-4678.16TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835YS76_9STRA1.040e-4358.56TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A816GSD5_9BILA2.850e-3556.14Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A836CJ53_9STRA8.670e-3563.74TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A820KW49_9BILA8.900e-3556.64Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A813W5K7_ADIRI9.400e-3550.93Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A814Q567_ADIRI1.690e-3454.05Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
A0A818TWT8_9BILA2.390e-3455.26Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A819MKF4_9BILA5.260e-3455.75Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:694637..694987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169122|e_gw1.62.128.1
DescriptionMortierella verticillata NRRL 6337
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsKOG4272@1|root,KOG4272@2759|Eukaryota,39QUC@33154|Opisthokonta,3Q6V2@4751|Fungi,1GUKY@112252|Fungi incertae sedis
Evalue1.76e-13
Seed ortholog78898.MVEG_09373T0
Hectar predicted targeting categoryother localisation
TranscriptId169444
TrackFilteredModels1
ProteinId169122
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169122gene_6571Tribonema minus UTEX_B_3156 geneContig_62 694637..694987 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6571_1exon_6571_1Tribonema minus UTEX_B_3156 exonContig_62 694637..694987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6571CDS_6571Tribonema minus UTEX_B_3156 CDSContig_62 694637..694987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169122Trimin1|169122|e_gw1.62.128.1Tribonema minus UTEX_B_3156 polypeptideContig_62 694637..694987 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6571 ID=mRNA_6571|Name=jgi.p|Trimin1|169122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_62:694637..694987- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAGTGACTGCATCTACAACGGCGAATGTGATGGATCTGCACACTG
TGTGCGCGTGTCTGATATAGTAGGATCCTGTGAGTGCAACACGGGGTATG
TGTCTACTGATAGTCTGCAGTGCAATTACGCGCAGAAGTCGGAGCTGGTG
ACTTTCTTACTGTCGTTTTTCGTGGGGTACCTCGGCGCCGACTGGTTCTA
CCTTGCGGATGGGGATGCTGGGTACATTGTAGCAGGTGTGTTCAAACTCA
TCATAACAGGAGGCTTTGGAATTTGGTGGCTCATCGATTGGATCAGGATC
TTAGCGAATGCTTTCCCCGATGGCAATGGCGTTGAGCTCGAGCAAATGTA
A
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protein sequence of jgi.p|Trimin1|169122

>Trimin1|169122|e_gw1.62.128.1 ID=Trimin1|169122|e_gw1.62.128.1|Name=jgi.p|Trimin1|169122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MLSDCIYNGECDGSAHCVRVSDIVGSCECNTGYVSTDSLQCNYAQKSELV
TFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRI
LANAFPDGNGVELEQM*
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mRNA from alignment at Contig_62:694637..694987-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6571 ID=mRNA_6571|Name=jgi.p|Trimin1|169122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_62:694637..694987- (Tribonema minus UTEX_B_3156 )
ATGCTGAGTGACTGCATCTACAACGGCGAATGTGATGGATCTGCACACTG
TGTGCGCGTGTCTGATATAGTAGGATCCTGTGAGTGCAACACGGGGTATG
TGTCTACTGATAGTCTGCAGTGCAATTACGCGCAGAAGTCGGAGCTGGTG
ACTTTCTTACTGTCGTTTTTCGTGGGGTACCTCGGCGCCGACTGGTTCTA
CCTTGCGGATGGGGATGCTGGGTACATTGTAGCAGGTGTGTTCAAACTCA
TCATAACAGGAGGCTTTGGAATTTGGTGGCTCATCGATTGGATCAGGATC
TTAGCGAATGCTTTCCCCGATGGCAATGGCGTTGAGCTCGAGCAAATGTA
A
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Coding sequence (CDS) from alignment at Contig_62:694637..694987-

>mRNA_6571 ID=mRNA_6571|Name=jgi.p|Trimin1|169122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_62:694637..694987- (Tribonema minus UTEX_B_3156 )
ATGCTGAGTGACTGCATCTACAACGGCGAATGTGATGGATCTGCACACTG
TGTGCGCGTGTCTGATATAGTAGGATCCTGTGAGTGCAACACGGGGTATG
TGTCTACTGATAGTCTGCAGTGCAATTACGCGCAGAAGTCGGAGCTGGTG
ACTTTCTTACTGTCGTTTTTCGTGGGGTACCTCGGCGCCGACTGGTTCTA
CCTTGCGGATGGGGATGCTGGGTACATTGTAGCAGGTGTGTTCAAACTCA
TCATAACAGGAGGCTTTGGAATTTGGTGGCTCATCGATTGGATCAGGATC
TTAGCGAATGCTTTCCCCGATGGCAATGGCGTTGAGCTCGAGCAAATGTA
A
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