mRNA_6549 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|81983
Unique NamemRNA_6549
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|81983 vs. uniprot
Match: A0A835YW43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW43_9STRA)

HSP 1 Score: 273 bits (699), Expect = 4.740e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 3 
Query:  201 MTSTIFAMPDAAQRRHQQQGMMHSRQQRCRCRNCGYEFLADSSDSHFCSGDCRITAVIRGANYPGLRPGVCRYEPNPLCGGGGSQEGPLQREARIVHRLSAPSSSPSSVRSDESSGSKPVPVPSPRARCQPTAL 602
            MTSTIFAMPDAAQRRHQQQGMMHSRQQRCRCRNCGYEFLADSSDSHFCSGDCRITAVIRGANYPGLRPGVCRYEPNPLCGGGGSQEGPLQREARIVHRLSAPSSSPSSVRSDESSGSKPVPVPSPRARCQPTAL
Sbjct:    1 MTSTIFAMPDAAQRRHQQQGMMHSRQQRCRCRNCGYEFLADSSDSHFCSGDCRITAVIRGANYPGLRPGVCRYEPNPLCGGGGSQEGPLQREARIVHRLSAPSSSPSSVRSDESSGSKPVPVPSPRARCQPTAL 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|81983 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YW43_9STRA4.740e-91100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_62contigContig_62:580512..581482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|81983|CE81982_170
Hectar predicted targeting categoryother localisation
TranscriptId82305
TrackFilteredModels1
ProteinId81983
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|81983gene_6549Tribonema minus UTEX_B_3156 geneContig_62 580512..581482 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6549_1exon_6549_1Tribonema minus UTEX_B_3156 exonContig_62 580512..580869 +
exon_6549_2exon_6549_2Tribonema minus UTEX_B_3156 exonContig_62 581076..581482 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6549UTR5_6549Tribonema minus UTEX_B_3156 five_prime_UTRContig_62 580512..580711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6549CDS_6549Tribonema minus UTEX_B_3156 CDSContig_62 580712..580869 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6549UTR3_6549Tribonema minus UTEX_B_3156 three_prime_UTRContig_62 581323..581482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|81983Trimin1|81983|CE81982_170Tribonema minus UTEX_B_3156 polypeptideContig_62 580712..581322 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6549 ID=mRNA_6549|Name=jgi.p|Trimin1|81983|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_62:580512..581482+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAGTGCGAGACGAGAGATCATTTGGAAGTGTGCGACTGCGAGATTCTG
TCAGCCAGCTGCACACTACACTGCCATCGTCTGCTGCTGCACAGCAGTAC
CGGAGAGTGTGGTGCACTGGGCCTTACCCCTGTGTGCAGCTGGCCAACAC
AGAACACCCTGCAGAAGTTGCCCTCCCGTCCGGCACAGCAACTAGACGTC
ATGACATCCACCATCTTTGCGATGCCCGACGCAGCACAGCGACGCCATCA
ACAGCAAGGGATGATGCATTCACGACAGCAGCGCTGTCGATGCCGGAATT
GCGGCTACGAGTTCCTTGCCGACTCCAGCGACAGCCACTTCTGCTCTGGG
GATTGCAGGATCACGGCTGTAATTAGAGGAGCCAACTATCCGGGCCTGCG
CCCTGGCGTTTGCCGCTACGAGCCGAACCCACTATGTGGCGGCGGAGGCA
GCCAGGAGGGCCCCTTGCAGCGAGAGGCGAGGATCGTGCACCGACTTTCT
GCTCCCAGCAGCAGCCCTAGCTCCGTCAGAAGCGATGAGTCCAGCGGCAG
CAAGCCGGTGCCCGTGCCTTCTCCCAGGGCGCGATGCCAACCAACCGCAT
TGTAAGGCAAGGTACCGGTTTATCCAGCGTCCGGGCTTACAGAAGGCCAG
CATGCCGGCTGCCTTATCATGCGCACGAGACCCGGCCTCGGTGCTATTGC
CCATGGGCACCCATCGCTGCCAGCGGCAGGCCATCATACAGGCTGCCTTG
GACGACAAACGTACA
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protein sequence of jgi.p|Trimin1|81983

>Trimin1|81983|CE81982_170 ID=Trimin1|81983|CE81982_170|Name=jgi.p|Trimin1|81983|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MTSTIFAMPDAAQRRHQQQGMMHSRQQRCRCRNCGYEFLADSSDSHFCSG
DCRITAVIRGANYPGLRPGVCRYEPNPLCGGGGSQEGPLQREARIVHRLS
APSSSPSSVRSDESSGSKPVPVPSPRARCQPTAL*
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mRNA from alignment at Contig_62:580512..581482+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6549 ID=mRNA_6549|Name=jgi.p|Trimin1|81983|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=971bp|location=Sequence derived from alignment at Contig_62:580512..581482+ (Tribonema minus UTEX_B_3156 )
GGCAGTGCGAGACGAGAGATCATTTGGAAGTGTGCGACTGCGAGATTCTG
TCAGCCAGCTGCACACTACACTGCCATCGTCTGCTGCTGCACAGCAGTAC
CGGAGAGTGTGGTGCACTGGGCCTTACCCCTGTGTGCAGCTGGCCAACAC
AGAACACCCTGCAGAAGTTGCCCTCCCGTCCGGCACAGCAACTAGACGTC
ATGACATCCACCATCTTTGCGATGCCCGACGCAGCACAGCGACGCCATCA
ACAGCAAGGGATGATGCATTCACGACAGCAGCGCTGTCGATGCCGGAATT
GCGGCTACGAGTTCCTTGCCGACTCCAGCGACAGCCACTTCTGCTCTGGG
GATTGCAGGTCAGTGAGGCCTCGGAGTAGCACAGCACACACCTCCCCGCG
CGCGCTTGTGCGAGCGCACATGGGCACTAGCTCCAGTCCTCGCAACCTGT
GGCTGATTATGTTCTGCAGCGTTCACTCCCTGCTAGCAAGCGTCTTCTGT
AGCTGTGTCGCTTCCTCCAACCTGTTTTATTCACACTTATCGCCCTTTTG
TATCTTTCCCACAGGATCACGGCTGTAATTAGAGGAGCCAACTATCCGGG
CCTGCGCCCTGGCGTTTGCCGCTACGAGCCGAACCCACTATGTGGCGGCG
GAGGCAGCCAGGAGGGCCCCTTGCAGCGAGAGGCGAGGATCGTGCACCGA
CTTTCTGCTCCCAGCAGCAGCCCTAGCTCCGTCAGAAGCGATGAGTCCAG
CGGCAGCAAGCCGGTGCCCGTGCCTTCTCCCAGGGCGCGATGCCAACCAA
CCGCATTGTAAGGCAAGGTACCGGTTTATCCAGCGTCCGGGCTTACAGAA
GGCCAGCATGCCGGCTGCCTTATCATGCGCACGAGACCCGGCCTCGGTGC
TATTGCCCATGGGCACCCATCGCTGCCAGCGGCAGGCCATCATACAGGCT
GCCTTGGACGACAAACGTACA
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Coding sequence (CDS) from alignment at Contig_62:580512..581482+

>mRNA_6549 ID=mRNA_6549|Name=jgi.p|Trimin1|81983|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_62:580512..581482+ (Tribonema minus UTEX_B_3156 )
ATGACATCCACCATCTTTGCGATGCCCGACGCAGCACAGCGACGCCATCA
ACAGCAAGGGATGATGCATTCACGACAGCAGCGCTGTCGATGCCGGAATT
GCGGCTACGAGTTCCTTGCCGACTCCAGCGACAGCCACTTCTGCTCTGGG
GATTGCAGGATCACGGCTGTAATTAGAGGAGCCAACTATCCGGGCCTGCG
CCCTGGCGTTTGCCGCTACGAGCCGAACCCACTATGTGGCGGCGGAGGCA
GCCAGGAGGGCCCCTTGCAGCGAGAGGCGAGGATCGTGCACCGACTTTCT
GCTCCCAGCAGCAGCCCTAGCTCCGTCAGAAGCGATGAGTCCAGCGGCAG
CAAGCCGGTGCCCGTGCCTTCTCCCAGGGCGCGATGCCAACCAACCGCAT
TGTAA
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