mRNA_8753 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350385
Unique NamemRNA_8753
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350385 vs. uniprot
Match: A0A836C9R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R9_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.430e-84
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 MGASQRDSAQSQDCSRAPLSITVDAGAAASTWATPTHSNDQSPAVFFHLHAAATGDGSGXXXXXXXGSTAADGKSAHIEAADIGGSAPDIFAWLKGNIIPTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPTAAHSSCEAEWRDSQHRADSDSCFLESESNEALFQFLVSS 525
            MGASQRDSAQSQDCSRAPLSITVDAGAAASTWATPTHSNDQSPAVFFHLHAAATGDGSGXXXXXXXGSTAADGKSAHIEAADIGGSAPDIFAWLKGNIIPTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPTAAHSSCEAEWRDSQHRADSDSCFLESESNEALFQFLVSS
Sbjct:    1 MGASQRDSAQSQDCSRAPLSITVDAGAAASTWATPTHSNDQSPAVFFHLHAAATGDGSGXXXXXXXGSTAADGKSAHIEAADIGGSAPDIFAWLKGNIIPTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPTAAHSSCEAEWRDSQHRADSDSCFLESESNEALFQFLVSS 175
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350385 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9R9_9STRA1.430e-84100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:758089..759261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350385|estExt_Genemark1.C_Ctg_610083
Hectar predicted targeting categoryother localisation
TranscriptId350707
TrackFilteredModels1
ProteinId350385
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350385gene_8753Tribonema minus UTEX_B_3156 geneContig_61 758089..759261 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8753_2exon_8753_2Tribonema minus UTEX_B_3156 exonContig_61 758089..758690 -
exon_8753_1exon_8753_1Tribonema minus UTEX_B_3156 exonContig_61 759250..759261 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8753UTR3_8753Tribonema minus UTEX_B_3156 three_prime_UTRContig_61 758089..758174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8753CDS_8753Tribonema minus UTEX_B_3156 CDSContig_61 759250..759261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350385Trimin1|350385|estExt_Genemark1.C_Ctg_610083Tribonema minus UTEX_B_3156 polypeptideContig_61 758175..759261 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8753 ID=mRNA_8753|Name=jgi.p|Trimin1|350385|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=614bp|location=Sequence derived from alignment at Contig_61:758089..759261- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGAGCCAGCGTGACAGCGCTCAGTCCCAGGACTGCAGCCGTGC
GCCGCTGAGCATCACTGTGGATGCTGGCGCTGCTGCGTCCACATGGGCCA
CGCCCACCCACAGCAACGACCAGTCGCCAGCAGTCTTCTTCCACCTACAT
GCCGCAGCCACCGGTGACGGCAGCGGCAGCAGCGGTAGCAACAGCAGTGG
CAGCACGGCGGCGGATGGCAAGAGCGCCCACATAGAGGCAGCAGACATTG
GCGGCAGTGCACCAGACATATTTGCCTGGCTTAAGGGCAACATCATCCCA
ACTGCGACAGCAGCTGCTGCGGAGGCATCGGCAGCGGGTGTGGCACAGGC
CGTCACGACGGCAGACGCGCCACTGCCACTGGCGGCGGCGGCGACGGCGG
CGCCAACAGCAGCGCACAGCAGCTGCGAGGCGGAGTGGCGCGACTCACAA
CACCGCGCTGACTCCGACTCGTGCTTTCTAGAGTCAGAGAGCAATGAGGC
CCTATTCCAGTTCCTCGTGTCGTCGTGAGCGTGGGGCTCATGGGCTTGAA
GTGTGGGGCTAAGGGGGGGTATGTAGGCATAGCCTAGGCATAGCCCTGCC
CCACCCCCACATAC
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protein sequence of jgi.p|Trimin1|350385

>Trimin1|350385|estExt_Genemark1.C_Ctg_610083 ID=Trimin1|350385|estExt_Genemark1.C_Ctg_610083|Name=jgi.p|Trimin1|350385|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp
MGASQRDSAQSQDCSRAPLSITVDAGAAASTWATPTHSNDQSPAVFFHLH
AAATGDGSGSSGSNSSGSTAADGKSAHIEAADIGGSAPDIFAWLKGNIIP
TATAAAAEASAAGVAQAVTTADAPLPLAAAATAAPTAAHSSCEAEWRDSQ
HRADSDSCFLESESNEALFQFLVSS*
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mRNA from alignment at Contig_61:758089..759261-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8753 ID=mRNA_8753|Name=jgi.p|Trimin1|350385|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1173bp|location=Sequence derived from alignment at Contig_61:758089..759261- (Tribonema minus UTEX_B_3156 )
ATGGGCGCGAGCGTGCGGAGGCGTTGCTTGCAACGACATGAGCGCGTGCT
GGCGGCAGGATGATGATGGTCAAGCAGTGCCTATGTTCAGCGCCTGCTGC
CCGCAAAGCATCGCAGACTGCTGCCTGGGCATACTGAACTATAGATCGAA
GGTGAGTGGATGTTCAGTATTATGTGTGCAATGCCATGTGTAGCTGCACC
ATGCAGATTGCGCAGCCGTGCTTCTATTGACTTAAGGGTGTAATGCCAGA
GGCTCTTGACTTGTTTGTGATGACACCACTGAAGTTGCGTTACTGGATTT
GCAATACCACACACGCAGTTTGTCTTTGCCAGCTCCAACAGACACTCCTC
GCCTTTGGCTTGCTGCTTCCGCTGGCGGCAATGACCAATGCTGCATGTAT
GCTGAGCCGTGTATGTGTATGTTTACATGTATGTATGTATTCGCTTCTGG
CGCGGATAGCAGCCTCGTGCATTGAGCACACAGACCACAGTTGTGAACTC
GTCTCCAGCAGTGCATCTCAAGTCTCATCACAACGCTCAACGGCGCTGCC
ACGCGTGTCATTCTGCTGCAGCAGCGTGACAGCGCTCAGTCCCAGGACTG
CAGCCGTGCGCCGCTGAGCATCACTGTGGATGCTGGCGCTGCTGCGTCCA
CATGGGCCACGCCCACCCACAGCAACGACCAGTCGCCAGCAGTCTTCTTC
CACCTACATGCCGCAGCCACCGGTGACGGCAGCGGCAGCAGCGGTAGCAA
CAGCAGTGGCAGCACGGCGGCGGATGGCAAGAGCGCCCACATAGAGGCAG
CAGACATTGGCGGCAGTGCACCAGACATATTTGCCTGGCTTAAGGGCAAC
ATCATCCCAACTGCGACAGCAGCTGCTGCGGAGGCATCGGCAGCGGGTGT
GGCACAGGCCGTCACGACGGCAGACGCGCCACTGCCACTGGCGGCGGCGG
CGACGGCGGCGCCAACAGCAGCGCACAGCAGCTGCGAGGCGGAGTGGCGC
GACTCACAACACCGCGCTGACTCCGACTCGTGCTTTCTAGAGTCAGAGAG
CAATGAGGCCCTATTCCAGTTCCTCGTGTCGTCGTGAGCGTGGGGCTCAT
GGGCTTGAAGTGTGGGGCTAAGGGGGGGTATGTAGGCATAGCCTAGGCAT
AGCCCTGCCCCACCCCCACATAC
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Coding sequence (CDS) from alignment at Contig_61:758089..759261-

>mRNA_8753 ID=mRNA_8753|Name=jgi.p|Trimin1|350385|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_61:758089..759261- (Tribonema minus UTEX_B_3156 )
ATGGGCGCGAGCCAGCGTGACAGCGCTCAGTCCCAGGACTGCAGCCGTGC
GCCGCTGAGCATCACTGTGGATGCTGGCGCTGCTGCGTCCACATGGGCCA
CGCCCACCCACAGCAACGACCAGTCGCCAGCAGTCTTCTTCCACCTACAT
GCCGCAGCCACCGGTGACGGCAGCGGCAGCAGCGGTAGCAACAGCAGTGG
CAGCACGGCGGCGGATGGCAAGAGCGCCCACATAGAGGCAGCAGACATTG
GCGGCAGTGCACCAGACATATTTGCCTGGCTTAAGGGCAACATCATCCCA
ACTGCGACAGCAGCTGCTGCGGAGGCATCGGCAGCGGGTGTGGCACAGGC
CGTCACGACGGCAGACGCGCCACTGCCACTGGCGGCGGCGGCGACGGCGG
CGCCAACAGCAGCGCACAGCAGCTGCGAGGCGGAGTGGCGCGACTCACAA
CACCGCGCTGACTCCGACTCGTGCTTTCTAGAGTCAGAGAGCAATGAGGC
CCTATTCCAGTTCCTCGTGTCGTCGTGA
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