mRNA_8724 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350371
Unique Name	mRNA_8724
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350371 vs. uniprot
Match: A0A836CBN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN2_9STRA)

HSP 1 Score: 509 bits (1311), Expect = 5.340e-182
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1

Query:    1 MAITRRARLITEARALALQHSRARLNLDFESAESTDGQLGGXXXXXXDSAAGSDSEPSVPRRSGRKRKLPLYEETASASTLPPLLGVEEGKLLSMVVFGPRVWRRLPQGDQGARSGLTRDQRLHLLLDPAFYRRNGELCWETVLAYLQEHTPDWRNRKEAVVVGSGGEGEAAAFATRDVKIVLHGFQQCPLFWFAACRLAARGYAFQHVCHASRAQFRAALRRQSDVAGFSMQHTTSPLALISSRRENVRYYLGGFDNICNLL 789
            MAITRRARLITEARALALQHSRARLNLDFESAESTDGQLGGXXXXXXDSAAGSDSEPSVPRRSGRKRKLPLYEETASASTLPPLLGVEEGKLLSMVVFGPRVWRRLPQGDQGARSGLTRDQRLHLLLDPAFYRRNGELCWETVLAYLQEHTPDWRNRKEAVVVGSGGEGEAAAFATRDVKIVLHGFQQCPLFWFAACRLAARGYAFQHVCHASRAQFRAALRRQSDVAGFSMQHTTSPLALISSRRENVRYYLGGFDNICNLL
Sbjct:    1 MAITRRARLITEARALALQHSRARLNLDFESAESTDGQLGGXXXXXXDSAAGSDSEPSVPRRSGRKRKLPLYEETASASTLPPLLGVEEGKLLSMVVFGPRVWRRLPQGDQGARSGLTRDQRLHLLLDPAFYRRNGELCWETVLAYLQEHTPDWRNRKEAVVVGSGGEGEAAAFATRDVKIVLHGFQQCPLFWFAACRLAARGYAFQHVCHASRAQFRAALRRQSDVAGFSMQHTTSPLALISSRRENVRYYLGGFDNICNLL 263

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350371 vs. uniprot

BLAST of jgi.p|Trimin1|350371 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CBN2_9STRA	5.340e-182	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_61	contig	Contig_61:522556..526505 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350371\|estExt_Genemark1.C_Ctg_610061
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-08_005290.1
TranscriptId	350693
Track	FilteredModels1
ProteinId	350371

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350371	gene_8724	Tribonema minus UTEX_B_3156	gene	Contig_61 522556..526505 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350371	Trimin1\|350371\|estExt_Genemark1.C_Ctg_610061	Tribonema minus UTEX_B_3156	polypeptide	Contig_61 522556..526484 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8724_1	exon_8724_1	Tribonema minus UTEX_B_3156	exon	Contig_61 522556..522561 +
exon_8724_2	exon_8724_2	Tribonema minus UTEX_B_3156	exon	Contig_61 523041..523376 +
exon_8724_3	exon_8724_3	Tribonema minus UTEX_B_3156	exon	Contig_61 524084..524175 +
exon_8724_4	exon_8724_4	Tribonema minus UTEX_B_3156	exon	Contig_61 524864..525019 +
exon_8724_5	exon_8724_5	Tribonema minus UTEX_B_3156	exon	Contig_61 526283..526505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8724	CDS_8724	Tribonema minus UTEX_B_3156	CDS	Contig_61 522556..522561 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8724	UTR3_8724	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_61 526485..526505 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_61:522556..526505+
coding sequence from alignment at Contig_61:522556..526505+

spliced messenger RNA

>mRNA_8724 ID=mRNA_8724|Name=jgi.p|Trimin1|350371|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_61:522556..526505+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATCACGCGCAGGGCCCGCCTCATCACAGAGGCGCGCGCCCTCGC
CCTGCAGCACTCGCGCGCCCGCCTGAACCTGGACTTCGAATCCGCGGAGT
CCACCGATGGCCAGCTCGGAGGCGGCGGCGGCGGCAGCGCGGACTCTGCG
GCCGGCTCCGACTCCGAACCGAGCGTTCCGCGGCGTTCGGGAAGGAAGCG
TAAGCTGCCGCTGTACGAGGAGACGGCGTCAGCGAGCACGCTGCCGCCGC
TGCTGGGGGTAGAGGAGGGGAAGCTGCTGTCGATGGTGGTGTTCGGGCCG
CGCGTGTGGCGGCGGCTGCCGCAGGGGGACCAGGGCGCGCGCTCCGGACT
CACGCGCGACCAGCGGCTGCACCTGCTGCTGGACCCAGCGTTCTACAGGC
GCAACGGCGAGCTCTGCTGGGAGACTGTCTTGGCGTACTTGCAGGAGCAC
ACACCTGATTGGAGGAACAGGAAAGAGGCGGTGGTTGTGGGGAGCGGTGG
GGAAGGCGAGGCTGCGGCGTTTGCGACGCGCGATGTAAAAATTGTCCTTC
ACGGCTTCCAGCAGTGCCCGCTGTTTTGGTTCGCCGCGTGCCGCCTGGCG
GCGCGTGGCTACGCGTTCCAACACGTCTGCCACGCCTCGCGCGCGCAGTT
CCGCGCGGCGCTGCGGCGCCAGAGCGACGTGGCGGGCTTCTCCATGCAGC
ACACGACGTCGCCCCTCGCGCTCATCTCGAGCCGCCGCGAGAACGTGCGC
TACTACCTCGGCGGCTTTGACAATATCTGCAACCTGCTCTAGGCGCGTAT
GCGCGGATACGCA

protein sequence of jgi.p|Trimin1|350371

>Trimin1|350371|estExt_Genemark1.C_Ctg_610061 ID=Trimin1|350371|estExt_Genemark1.C_Ctg_610061|Name=jgi.p|Trimin1|350371|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MAITRRARLITEARALALQHSRARLNLDFESAESTDGQLGGGGGGSADSA
AGSDSEPSVPRRSGRKRKLPLYEETASASTLPPLLGVEEGKLLSMVVFGP
RVWRRLPQGDQGARSGLTRDQRLHLLLDPAFYRRNGELCWETVLAYLQEH
TPDWRNRKEAVVVGSGGEGEAAAFATRDVKIVLHGFQQCPLFWFAACRLA
ARGYAFQHVCHASRAQFRAALRRQSDVAGFSMQHTTSPLALISSRRENVR
YYLGGFDNICNLL*

mRNA from alignment at Contig_61:522556..526505+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8724 ID=mRNA_8724|Name=jgi.p|Trimin1|350371|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3950bp|location=Sequence derived from alignment at Contig_61:522556..526505+ (Tribonema minus UTEX_B_3156 )
ATGGCGGTGAGTAATTTTGAAAATCTTTCGAACATCCTGCCACTGTCGCC
ATGCCGCTGTGGCGTCGCGCTTGCTGAATCCTCGATTTATTTTTTTGAGG
GTCTCAGGACCCGCAGCTTGCAGCCCCAAGCTGGCGCGCGGTGAACTTGC
AGCGAGGAGGCAGAGCGCGCCCGCTTCCGATCCTTCTCAAATGGCGTGCC
AGCGAAGGCCATGACCGCACGTGAAGCAATCGGCATGCTGACTGAACATT
GGTCTGAACCCCCGCTCGATCTTATTCCTGCTGGTGAAGTGATGAGTTTG
GATAACAACACGGCCAGTCACAGCGCTCTAATGGGATCCTTAAAAGATTG
TTGAGCTTGTCTCATGTCGTCATACGATAGGATAACAAGCTCCGACAACT
CAAACGCGCTCTGCAACTTCAACTGTTGTCGAATGACCCGAATCGTAGCT
CACAACCTCGCACCTCGCCTTCCGCACAACCTCAGATCACGCGCAGGGCC
CGCCTCATCACAGAGGCGCGCGCCCTCGCCCTGCAGCACTCGCGCGCCCG
CCTGAACCTGGACTTCGAATCCGCGGAGTCCACCGATGGCCAGCTCGGAG
GCGGCGGCGGCGGCAGCGCGGACTCTGCGGCCGGCTCCGACTCCGAACCG
AGCGTTCCGCGGCGTTCGGGAAGGAAGCGTAAGCTGCCGCTGTACGAGGA
GACGGCGTCAGCGAGCACGCTGCCGCCGCTGCTGGGGGTAGAGGAGGGGA
AGCTGCTGTCGATGGTGGTGTTCGGGCCGCGCGTGTGGCGGCGGCTGCCG
CAGGGGGACCAGGGCGCGCGCGTGAGCCACTGATCCAGCGGCTACGTGTG
CGGGTTTCCCGTGCACAAGTGAGTGGGGGACCATAGGCGTAAACGGATCT
TGGAGGCTGTGGGCACTCGCTGCTATGTATGCCTTCATCACCTAGAGCGA
AGCAGTGGTGCCGGAAGAGGGGTTAGGGTTAGGGGTATCGTTTTGCATCA
TAAGAGGCCGCCAAGAGGTGACACAATGCGTGGATTGCATGGCGCTTCGG
CTGCAAGCGCTCTTTAGGCACTCTGCACGTCGTCAACCGAAGTGTTTGCC
CCAGTACTTTGTGACACGGATGTGTCACCTACGCGCACACATGGTCTTGC
ACTTGCATAGGTGCACTCGTCTACTGGTAGTAGGATCCCATGGCAACCAT
GCTGGCGCTGGCTCTTGGGTACAGGTCCAAGAGGGCAGCGCGAGGTGCCA
TAAGCACGGTGGTCTACCCTGTGCGTGATTACGGGTGTGCGCACATGATA
GCAGTGCTCGAGCTTGCCAATACTGCCTGCAACCTCATGTAGAACCCTTT
CCTGGCCTGCCCAACAATCGCCTTCTCATGTGTGTACGCGCTTCGGTTCT
GAGCAACGCTTCACTCTCCTCTCCGTCACAGGCCCAAGGAGGGCAACGCG
TGGTGCCAGGTCCCCGTAAGGCCCACCCTCAACTCGCGCCTCGCCTGCAG
TCACCATAGTCACCTCCGCGGCCCACAGTCCGGACTCACGCGCGACCAGC
GGCTGCACCTGCTGCTGGACCCAGCGTTCTACAGGCGCAACGGCGAGCTC
TGCTGGGAGACTGTCTTGGCGTGAGTGTTTCTGCCATTTGCTGCCACTGC
GTTTGTGCTGGGTTATGGTTTGAGTCTGTGTGGCAGTGCTCCACAGGTGC
AACGGCGAGCTCTGCTGGGAGACCGTCTTGGCGTTTTAGTCTTTTGCTGC
TGCTGCGTGAGTGCTGTGTTATGGTTTGAGGCTACACAGCAGCAGTGCTC
AACTGGTGCACCGACGGTCATGGCGTGAACGTGTCGATGTTTGCTGTTGC
TGTTGGCGCCCTGCGCCCATGGCCTGTGCCCCCCCCTTGACTTGTGCCTC
GGAGGCATAGCAAAGTTGTGCATGAGTGGCCTTCTGAGCACTGATATGCC
TGCGGCTGACATGGTTTGCTGCGTGACTGTGACGCCTTCAAGGAAGGCTG
GGGTATGTATAGTTCTAATTATAGGTAATGTATAGAGTACGGTGCACGTG
TACATGACCTGTTGCCGCTCTAGCTGCTACGCGTCACCTGCCTCCGTCAC
CTTCTGCAACCGGTCATGTTCGCGACTGGAAGAACAGGATGCTGTTGGCT
AATATGTGTGAGCAACAGCCTCACCGCCTCCTTACACACGCCATCTTCGC
AACGAGTGACTCACGCTCAAGCCTGTCAACATCTCCGCCTCTGTCCACTT
CAACGAGACTTATACTCACATTTGTCGTTTTTGCGGCTTCGTTGTGATTG
TGCATCAGGTACTTGCAGGAGCACACACCTGATTGGAGGAACAGGAAAGA
GGCGGTGGTTGTGGGGAGCGGTGGGGAAGGCGAGGCTGCGGCGTTTGCGA
CGCGCGATGTAAAAATTGTCCTTCACGGCTTCCAGCAGTGCCCGCTGTTT
TGGTTCGCCGCGTGGTAAGTTGAAGTTGCCTCCTCCTTCTGAAACTCAGA
GCAATAGATTGCGGGGTGGAAATGAGGTTAGGCCGCCGGTATCACAGGTA
CAGGTGTTGAGCATCAGCATGGGGTGGCCGTCGTGTTGTGCAGCCCTGAC
ACATGTATTCATTGCGTACGAAGGAAGTTGCACTAACGCTCAGCCATGTC
GAAGTCAGCTGATGAAGCGATTTCACAGCCATTGACGGGAAACACATTGT
GCCATACAGAGCGTTGATCCGCAGTGAGTTGAACTTGAAGTTGAACTACA
CGAGGCGCCGTCATTCAAGGAGTGGGCACGGAAGCTGTGTAAACGGTGGT
TTTTGCTGAGGTCGAGAGAGCCTGACTGCTCTGACAGTGGTATTTGCTCT
CGGGCACAAAGTAATTAACGTGTTTGGGCTGTTGGCATGTACAGCAGTGG
CTTTCCATAGTGGTAGCTCACCATGGTGCAGCCTTGTTGCGCAAAGTGCG
GTGTTCCGGCACCATAGGTCACAGCGCATTACAGCATATAACAGAAAGTC
ACAGTAGACGGCCTGTGTCGATTCCTGGGCTTCCTGCTCCTGCCTGTGTT
GAAGTATGTCAACATGAAGTTTGAGCATATCACTATGTCTGCTCACTTGT
ATGGCGCTGTGTTACGCCACGAGCGCCGCTACTGTAGAATTTGAAAACCC
TGCTGGAGCCTGATAAACCTATGTTGAAGTTGCTGCTACACGCACTTGTG
ATGCAATTGCTGCCAGTGCGCGTCACCGCTGTGAAGCAGCATATACGACA
CAATGTCATGGCATGCATCTGTGCAGCCGCATTACCATGCTGGTGCACAT
TGCTGAGCACAGCAAGTCAGCCTCGCACAGAGCAGCGACGTCTTGGTCAA
AGCAGCATCGCGTACGCTCTATCGAAGATACTTCATACAGGTGCATATCC
TGCAACAACACGACAGCAGACCGATGCCTATGTATATATATTGTGAAGCG
ACAAGCCTCAGCTGCTTTCTCCGCCCTGACGCTGCGCTGCCTCCGCAGCC
GCCTGGCGGCCCGCGGCCACAGCAACACATTGCGCACTTGTCAGGTCAAG
ATTGCGGGCCCCCCGTCATGAAGTCCTCACCTCGCATCCGTCACACACAC
CTGCAATGTCACCTCAAGTACACAGCCGCAAACCCCTTCCTCCATGGATC
TTGCATCGCAAAGCTCGCAACTCCGCTCAGCCGCTTCCGCCCGCCGGGAC
GCTGCGCCCGCCCCCTTCCCCTTTCAGCCGCCTGGCGGCGCGTGGCTACG
CGTTCCAACACGTCTGCCACGCCTCGCGCGCGCAGTTCCGCGCGGCGCTG
CGGCGCCAGAGCGACGTGGCGGGCTTCTCCATGCAGCACACGACGTCGCC
CCTCGCGCTCATCTCGAGCCGCCGCGAGAACGTGCGCTACTACCTCGGCG
GCTTTGACAATATCTGCAACCTGCTCTAGGCGCGTATGCGCGGATACGCA

Coding sequence (CDS) from alignment at Contig_61:522556..526505+

>mRNA_8724 ID=mRNA_8724|Name=jgi.p|Trimin1|350371|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_61:522556..526505+ (Tribonema minus UTEX_B_3156 )
ATGGCGATCACGCGCAGGGCCCGCCTCATCACAGAGGCGCGCGCCCTCGC
CCTGCAGCACTCGCGCGCCCGCCTGAACCTGGACTTCGAATCCGCGGAGT
CCACCGATGGCCAGCTCGGAGGCGGCGGCGGCGGCAGCGCGGACTCTGCG
GCCGGCTCCGACTCCGAACCGAGCGTTCCGCGGCGTTCGGGAAGGAAGCG
TAAGCTGCCGCTGTACGAGGAGACGGCGTCAGCGAGCACGCTGCCGCCGC
TGCTGGGGGTAGAGGAGGGGAAGCTGCTGTCGATGGTGGTGTTCGGGCCG
CGCGTGTGGCGGCGGCTGCCGCAGGGGGACCAGGGCGCGCGCTCCGGACT
CACGCGCGACCAGCGGCTGCACCTGCTGCTGGACCCAGCGTTCTACAGGC
GCAACGGCGAGCTCTGCTGGGAGACTGTCTTGGCGTACTTGCAGGAGCAC
ACACCTGATTGGAGGAACAGGAAAGAGGCGGTGGTTGTGGGGAGCGGTGG
GGAAGGCGAGGCTGCGGCGTTTGCGACGCGCGATGTAAAAATTGTCCTTC
ACGGCTTCCAGCAGTGCCCGCTGTTTTGGTTCGCCGCGTGCCGCCTGGCG
GCGCGTGGCTACGCGTTCCAACACGTCTGCCACGCCTCGCGCGCGCAGTT
CCGCGCGGCGCTGCGGCGCCAGAGCGACGTGGCGGGCTTCTCCATGCAGC
ACACGACGTCGCCCCTCGCGCTCATCTCGAGCCGCCGCGAGAACGTGCGC
TACTACCTCGGCGGCTTTGACAATATCTGCAACCTGCTCTAG