Trimin1|352181|estExt_Genemark1.C_Ctg_1110027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352181
Unique NameTrimin1|352181|estExt_Genemark1.C_Ctg_1110027
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length328
Homology
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A836CM72_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM72_9STRA)

HSP 1 Score: 579 bits (1492), Expect = 1.450e-207
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query:    1 MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRLRRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQNGDESAATAXXXXXXXXXXXXXXXXXXXXXXXXAACADGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIAPRFFL 327
            MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRLRRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQNGDESAATAXXXXXXXXXXXXXXXXXXXXXXXXAACADGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIAPRFFL
Sbjct:    1 MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRLRRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQNGDESAATAXXXXXXXXXXXXXXXXXXXXXXXXAACADGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIAPRFFL 327          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.360e-26
Identity = 69/171 (40.35%), Postives = 83/171 (48.54%), Query Frame = 0
Query:  139 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEP-----------------VGLDLALSFQENQGCMEIWSQITDVQGR 292
            GWRVKLYQLN +GQWD +GTG+ISC+ + ++  TAL V++E DG +L+Q                                                       SKV D DVY+RQGDNIITWCE                   G+DLALSFQEN GC+EIW QI DVQGR
Sbjct:    5 GWRVKLYQLNDEGQWDDRGTGHISCRAVESLGGTALVVLAEEDGRELMQ-------------------------------------------------------SKVVDEDVYQRQGDNIITWCEAPPLIGAANSGVAAARGAAGVDLALSFQENVGCLEIWDQICDVQGR 120          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.370e-26
Identity = 69/171 (40.35%), Postives = 83/171 (48.54%), Query Frame = 0
Query:  139 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEP-----------------VGLDLALSFQENQGCMEIWSQITDVQGR 292
            GWRVKLYQLN +GQWD +GTG+ISC+ + ++  TAL V++E DG +L+Q                                                       SKV D DVY+RQGDNIITWCE                   G+DLALSFQEN GC+EIW QI DVQGR
Sbjct:   92 GWRVKLYQLNDEGQWDDRGTGHISCRAVESLGGTALVVLAEEDGRELMQ-------------------------------------------------------SKVVDEDVYQRQGDNIITWCEAPPLIGAANNGVAAARGAAGVDLALSFQENVGCLEIWDQICDVQGR 207          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 107 bits (268), Expect = 1.030e-22
Identity = 62/163 (38.04%), Postives = 82/163 (50.31%), Query Frame = 0
Query:  139 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV----GLDLALSFQENQGCMEIWSQITDVQGRKNSAR 297
            GWRVKLYQLN  GQWD +GTG+ISC ++  +   AL +++E +  +LL+                                                       SK+ D DVY+RQGDNIITW EP     G+DLALSFQEN GC+EIW+++ DVQG+ +  R
Sbjct:    7 GWRVKLYQLNDQGQWDDRGTGHISCTFVEEL-GNALVILNEENQQELLK-------------------------------------------------------SKIIDEDVYQRQGDNIITWTEPEENGSGVDLALSFQENAGCLEIWNKVCDVQGKYSEFR 113          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A1E7FC66_9STRA (DUF625-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FC66_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.360e-17
Identity = 59/165 (35.76%), Postives = 76/165 (46.06%), Query Frame = 0
Query:  138 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV--------GLDLALSFQENQGCMEIWSQITDVQGRKN 294
            +GWRVKLY+LN+DG WD  GTG I      +  AT+   + +                             HIS+S N    P                      +++   D Y+RQGDNIITWCEP         G+DLALSFQ+N GC++IW QITDVQ + N
Sbjct:   36 EGWRVKLYRLNADGSWDDCGTGRI---LFSSSAATSTLSIQQQT---------------------------HISSSNNSTGNP-----------------RILLRTRILLRDAYQRQGDNIITWCEPYLEEGNPAQGVDLALSFQDNAGCIDIWRQITDVQSKAN 153          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A4D9DCZ9_9STRA (SMK-1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.890e-16
Identity = 56/169 (33.14%), Postives = 73/169 (43.20%), Query Frame = 0
Query:  138 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPVG-----LDLALSFQENQGCMEIWSQITDVQGRKNSARQAAE 301
            +GWR KLYQL+ +GQWD KGTG+++ K    +  TA     E DG  LL L                                                       ++   D+Y+RQGDNIITW EP        D+ALSFQ+ QGC  IW ++  VQGR +S  +A E
Sbjct:  110 EGWRFKLYQLDVEGQWDDKGTGFLTIKNDERLGGTAFQASKEDDGSVLLNL-------------------------------------------------------RIQPEDIYQRQGDNIITWTEPGAHGKDPYDMALSFQDEQGCRHIWERLVSVQGRYHSDYRAFE 223          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A7S2D4C1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4C1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.050e-15
Identity = 57/160 (35.62%), Postives = 72/160 (45.00%), Query Frame = 0
Query:  138 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVS-DSDVYRRQGDNIITWCEPVG----LDLALSFQENQGCMEIWSQITDVQGR 292
            +GWRVKLYQLN DGQWD +GTG I   +  A+    + VVSE     L+                                                        S+++ D D Y  QG++IITW E  G    LDLALSFQEN+GCM+IW QI ++QGR
Sbjct:   22 EGWRVKLYQLNDDGQWDDRGTGKIRVDHAEALGTPCVHVVSEESSRDLV-------------------------------------------------------TSRITEDRDAYSLQGESIITWEERRGAQGSLDLALSFQENEGCMQIWHQIQEIQGR 126          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A7S1V078_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V078_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.060e-15
Identity = 60/178 (33.71%), Postives = 77/178 (43.26%), Query Frame = 0
Query:  138 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEAT--ALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV---------------------GLDLALSFQENQGCMEIWSQITDVQGR 292
            +GWRVKLY+LN+DG WD  GTG I C Y     +T  A    +      LL   G          +  L           + TL         C       +     +++   D Y+RQGDNIITWCEP                      G+DLALSFQ+N GC++IW QIT VQ +
Sbjct:    8 EGWRVKLYRLNNDGSWDDCGTGRIVCLYRGKPVSTKPATGDAASSSSSSLLSTDGNPDKSLQEEVYHLLG----------EPTL---------CMHAETTAARVLLRTRILLRDAYQRQGDNIITWCEPFFEEQTRDTTGIGQIGAAAAGGGVDLALSFQDNAGCLDIWRQITHVQSK 166          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: A0A448ZI04_9STRA (SMK-1 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI04_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.800e-15
Identity = 67/213 (31.46%), Postives = 89/213 (41.78%), Query Frame = 0
Query:  138 DGWRVKLYQLNSDGQWDAKGTGYISCKY-----------------IH------AVEATA-----------------------LCVVSEVDGCQLL--QLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV--------GLDLALSFQENQGCMEIWSQITDVQGRKN 294
            +GWRVKLY+LN+DG WD  GTG I C Y                 IH      A+ A +                       LC+ SEV     +   +                   + +S S N  T+           + R   S     +++   D Y+RQGDNIITWCEP         G+DLALSFQ+N+GC++IW QIT VQ + N
Sbjct:  318 EGWRVKLYRLNADGSWDDCGTGRILCLYKQKQPGQKKNNNSPSDTIHNGNGEXAMNAESNPSQSPSGPLSDSEIYVELGEPTLCMHSEVASTNGMPSSIQQQXXXXXXXXXXXXXXXXSDLSNSDNQQTI-----------SARNTGSRILLRTRILLRDAYQRQGDNIITWCEPYLEEGNPTQGVDLALSFQDNKGCIDIWRQITQVQSKAN 519          
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Match: B7GB45_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GB45_PHATC)

HSP 1 Score: 86.3 bits (212), Expect = 8.380e-15
Identity = 77/237 (32.49%), Postives = 91/237 (38.40%), Query Frame = 0
Query:  138 DGWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPG--TFSGAFRALAGGAHISASKNDFTLPVPVPGSPPC-------------AAGRGAFSAAFRASKVSDS------------DVYRRQGDNIITWCEPV-------------------------GLDLALSFQENQGCMEIWSQITDVQGRKNSARQAAELRCPVEEETWLRSSAASPRIA 322
            +GWRVKLY+LN+DG WD  GTG I C Y           V +         V +  P   T+S         A  S            P SP                 G         ASK + S            D Y+RQGDNIITWCEP                          G+DLALSFQ+N GC++IW QIT VQG      QAAEL     +ET   SS+     A
Sbjct:  204 EGWRVKLYRLNADGSWDDCGTGRILCLYRTPGVQKPTSPVQDGHQANTNTSVASTLPSEATYS---------AETSTXXXXXXXXXXSPASPTSNKVKTNVDQWLHTETGEATLCVHAEASKQNSSRRVLLRTRVLLRDAYQRQGDNIITWCEPYYGNRATSPDGNATSTSGXXXTSSTSGVDLALSFQDNAGCLDIWRQITQVQG------QAAELL----QETLAASSSVEDMAA 421          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352181 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM72_9STRA1.450e-207100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FI53_ECTSI4.360e-2640.35SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKJ6_9PHAE6.370e-2640.35SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3YI92_HETAK1.030e-2238.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1E7FC66_9STRA2.360e-1735.76DUF625-domain-containing protein n=1 Tax=Fragilari... [more]
A0A4D9DCZ9_9STRA2.890e-1633.14SMK-1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2D4C1_9STRA2.050e-1535.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1V078_9STRA3.060e-1533.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A448ZI04_9STRA7.800e-1531.46SMK-1 domain-containing protein n=1 Tax=Pseudo-nit... [more]
B7GB45_PHATC8.380e-1532.49Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 136..310
e-value: 5.1E-28
score: 99.6
NoneNo IPR availablePANTHERPTHR23318ATP SYNTHASE GAMMA-RELATEDcoord: 141..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:207761..212882 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352181mRNA_11883Tribonema minus UTEX_B_3156 mRNAContig_111 207761..212882 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352181|estExt_Genemark1.C_Ctg_1110027 ID=Trimin1|352181|estExt_Genemark1.C_Ctg_1110027|Name=jgi.p|Trimin1|352181|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MTMVLSIVASAFQLEAMWLEQLSRGATLAEGAENFGAELEQLALGPGGRL
RRTGLLAAPDGAAANAAAIVKREPAAGSGHDVAGAAGPHLAGGASEMGVQ
NGDESAATAATAGSAGGAAATAAGAAAAGGVAAAACADGWRVKLYQLNSD
GQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGA
FRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDV
YRRQGDNIITWCEPVGLDLALSFQENQGCMEIWSQITDVQGRKNSARQAA
ELRCPVEEETWLRSSAASPRIAPRFFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf