Trimin1|350350|estExt_Genemark1.C_Ctg_610031 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350350
Unique Name	Trimin1\|350350\|estExt_Genemark1.C_Ctg_610031
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	156

Homology

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BLAST of jgi.p|Trimin1|350350 vs. uniprot
Match: A0A835YW95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW95_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.860e-28
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL 155
            MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL
Sbjct:    1 MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL 155

[Close]

BLAST of jgi.p|Trimin1|350350 vs. uniprot
Match: A0A835YN36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN36_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-5
Identity = 43/96 (44.79%), Postives = 46/96 (47.92%), Query Frame = 0

Query:    1 MKDNSNHDHDHHDQELRTKLEVLT----------------------------------------LREQAASSGFEQLFVQLEKDLKEQLEESSREA 56
            M DNSNHDH+   +ELRTKLE LT                                        LREQA   GFEQL VQL KDLKEQLEESS+EA
Sbjct:   37 MNDNSNHDHN---EELRTKLEGLTVRQQTFKADTTARLDELAELAREKGKVLLLEQEKEALKLQLREQAHQRGFEQLCVQLGKDLKEQLEESSKEA 129

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350350 vs. uniprot

BLAST of jgi.p|Trimin1|350350 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YW95_9STRA	5.860e-28	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YN36_9STRA	1.770e-5	44.79	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..139
None	No IPR available	COILS	Coil	Coil	coord: 39..84
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 5..138 e-value: 1.9E-5 score: 26.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..79

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_61	contig	Contig_61:259772..260358 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350350	mRNA_8686	Tribonema minus UTEX_B_3156	mRNA	Contig_61 259772..260394 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350350|estExt_Genemark1.C_Ctg_610031 ID=Trimin1|350350|estExt_Genemark1.C_Ctg_610031|Name=jgi.p|Trimin1|350350|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLE
ESSREAREQLVESSNEAREQLEAHKAELKAQRGVDKAELKAQMEVDKAEL
RAQRLADKAELKQQMEVDKAELKEQMKADKAELKDAFQTSLIFAAIVYSV
LQLVL*