mRNA_8686 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350350
Unique NamemRNA_8686
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350350 vs. uniprot
Match: A0A835YW95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW95_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.470e-29
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 
Query:    1 MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL 465
            MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL
Sbjct:    1 MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL 155
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BLAST of jgi.p|Trimin1|350350 vs. uniprot
Match: A0A835YN36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN36_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.660e-5
Identity = 81/195 (41.54%), Postives = 85/195 (43.59%), Query Frame = 1 
Query:    1 MKDNSNHDHDHHDQELRTKLEVLT----------------------------------------LREQAASSGFEQLFVQLEKDLKEQLEESSREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAFQTSLIFAAIVYSVLQLVL 465
            M DNSNHDH+   +ELRTKLE LT                                        LREQA   GFEQL VQL KDLKEQLEESS+EA                      XXXXXXXXXXXXXXXXXXX                                     DAFQ SLIFAAIVYSVLQ+VL
Sbjct:   37 MNDNSNHDHN---EELRTKLEGLTVRQQTFKADTTARLDELAELAREKGKVLLLEQEKEALKLQLREQAHQRGFEQLCVQLGKDLKEQLEESSKEAWEQWKADMAEREADKAELKSQMXXXXXXXXXXXXXXXXXXX-------------------------------------DAFQRSLIFAAIVYSVLQVVL 191
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BLAST of jgi.p|Trimin1|350350 vs. uniprot
Match: A0A835YPN7_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN7_9STRA)

HSP 1 Score: 625 bits (1612), Expect = 1.990e-224
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 1 
Query:    1 MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDFAYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKAASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRSNVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVGDAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQKQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTKRAKILSFADGEEVEL 945
            MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDFAYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKAASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRSNVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVGDAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQKQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTKRAKILSFADGEEVEL
Sbjct:    1 MTEEDFRVIAAGYKRKAKTPCASAAPAAIRTEARGTEPRSAVTGDRNRDFAYRLHRHLQKGDAGGLVWSADVCHFSSFRRQLSYYAFKAHGQERDRAGKAASAFSHPNFHRDMTEDDFRVIAAGYKTKAKTPCVSTGAVCLEARGTGPRSNVTGVSNKVHDDNGGVEGARHSVGTGSLGRDLAVQTTQGPERDVAPDGVGDAKGHAMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQLQSALGQKQKGHEARPWQAVAHAAAEASACAPAKEAGVAYGAAAEDGGAEGNERCTKRAKILSFADGEEVEL 315
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BLAST of jgi.p|Trimin1|350350 vs. uniprot
Match: A0A836CAD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.280e-12
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:  616 AMLRHIIEATQTVAARSWGVPTLRDAQTILRWIDECDQL-QSALGQK 753
            A++      ++TVAARSWG PTLRDAQTILRWIDECDQL QSALGQ+
Sbjct:    3 ALMAEFHADSETVAARSWGAPTLRDAQTILRWIDECDQLLQSALGQR 49
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350350 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YW95_9STRA5.470e-29100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN36_9STRA1.660e-541.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|350350 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YPN7_9STRA1.990e-224100.00HSF_DOMAIN domain-containing protein n=1 Tax=Tribo... [more]
A0A836CAD7_9STRA8.280e-1272.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:259772..260394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350350|estExt_Genemark1.C_Ctg_610031
Hectar predicted targeting categoryother localisation
TranscriptId350672
TrackFilteredModels1
ProteinId350350
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350350gene_8686Tribonema minus UTEX_B_3156 geneContig_61 259772..260394 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8686_1exon_8686_1Tribonema minus UTEX_B_3156 exonContig_61 259772..259843 +
exon_8686_2exon_8686_2Tribonema minus UTEX_B_3156 exonContig_61 259963..260394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8686CDS_8686Tribonema minus UTEX_B_3156 CDSContig_61 259772..259843 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8686UTR3_8686Tribonema minus UTEX_B_3156 three_prime_UTRContig_61 260359..260394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350350Trimin1|350350|estExt_Genemark1.C_Ctg_610031Tribonema minus UTEX_B_3156 polypeptideContig_61 259772..260358 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8686 ID=mRNA_8686|Name=jgi.p|Trimin1|350350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_61:259772..260394+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGACAACTCGAACCACGACCACGATCACCACGATCAGGAACTGAG
GACGAAGCTGGAGGTGCTCACTCTCAGGGAGCAGGCCGCCAGCAGTGGGT
TCGAGCAACTCTTTGTTCAGCTGGAAAAAGACCTGAAGGAGCAGCTGGAG
GAGAGCAGCAGAGAGGCTCGGGAGCAGCTGGTGGAGAGCAGCAATGAGGC
TCGGGAGCAGCTGGAGGCCCACAAGGCGGAGCTGAAGGCACAGCGGGGGG
TTGACAAGGCGGAGCTGAAGGCGCAGATGGAGGTTGACAAGGCGGAGCTG
AGGGCGCAGCGGCTGGCCGACAAGGCGGAGCTGAAGCAGCAGATGGAGGT
TGACAAGGCGGAACTGAAGGAGCAGATGAAGGCCGACAAGGCGGAGCTGA
AAGATGCTTTCCAGACGAGCCTTATTTTCGCGGCCATTGTCTACAGCGTG
CTGCAATTGGTACTGTAGGTTTGAAGCTGACGGACAGCGGCTGACGGACG
GCGG
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protein sequence of jgi.p|Trimin1|350350

>Trimin1|350350|estExt_Genemark1.C_Ctg_610031 ID=Trimin1|350350|estExt_Genemark1.C_Ctg_610031|Name=jgi.p|Trimin1|350350|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MKDNSNHDHDHHDQELRTKLEVLTLREQAASSGFEQLFVQLEKDLKEQLE
ESSREAREQLVESSNEAREQLEAHKAELKAQRGVDKAELKAQMEVDKAEL
RAQRLADKAELKQQMEVDKAELKEQMKADKAELKDAFQTSLIFAAIVYSV
LQLVL*
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mRNA from alignment at Contig_61:259772..260394+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8686 ID=mRNA_8686|Name=jgi.p|Trimin1|350350|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=623bp|location=Sequence derived from alignment at Contig_61:259772..260394+ (Tribonema minus UTEX_B_3156 )
ATGAAAGACAACTCGAACCACGACCACGATCACCACGATCAGGAACTGAG
GACGAAGCTGGAGGTGCTCACTGTCAGTCAGCAAAACTTAAAGCAGACAC
CACTGCGCGTCTGGATGAGTTTGCAGAACTTGCCAGGGAGAAAGGCAAGG
TCTTGCTGCTGGAGCAACAGAACGACGCACTAAAACTGCAGCTCAGGGAG
CAGGCCGCCAGCAGTGGGTTCGAGCAACTCTTTGTTCAGCTGGAAAAAGA
CCTGAAGGAGCAGCTGGAGGAGAGCAGCAGAGAGGCTCGGGAGCAGCTGG
TGGAGAGCAGCAATGAGGCTCGGGAGCAGCTGGAGGCCCACAAGGCGGAG
CTGAAGGCACAGCGGGGGGTTGACAAGGCGGAGCTGAAGGCGCAGATGGA
GGTTGACAAGGCGGAGCTGAGGGCGCAGCGGCTGGCCGACAAGGCGGAGC
TGAAGCAGCAGATGGAGGTTGACAAGGCGGAACTGAAGGAGCAGATGAAG
GCCGACAAGGCGGAGCTGAAAGATGCTTTCCAGACGAGCCTTATTTTCGC
GGCCATTGTCTACAGCGTGCTGCAATTGGTACTGTAGGTTTGAAGCTGAC
GGACAGCGGCTGACGGACGGCGG
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Coding sequence (CDS) from alignment at Contig_61:259772..260394+

>mRNA_8686 ID=mRNA_8686|Name=jgi.p|Trimin1|350350|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_61:259772..260394+ (Tribonema minus UTEX_B_3156 )
ATGAAAGACAACTCGAACCACGACCACGATCACCACGATCAGGAACTGAG
GACGAAGCTGGAGGTGCTCACTCTCAGGGAGCAGGCCGCCAGCAGTGGGT
TCGAGCAACTCTTTGTTCAGCTGGAAAAAGACCTGAAGGAGCAGCTGGAG
GAGAGCAGCAGAGAGGCTCGGGAGCAGCTGGTGGAGAGCAGCAATGAGGC
TCGGGAGCAGCTGGAGGCCCACAAGGCGGAGCTGAAGGCACAGCGGGGGG
TTGACAAGGCGGAGCTGAAGGCGCAGATGGAGGTTGACAAGGCGGAGCTG
AGGGCGCAGCGGCTGGCCGACAAGGCGGAGCTGAAGCAGCAGATGGAGGT
TGACAAGGCGGAACTGAAGGAGCAGATGAAGGCCGACAAGGCGGAGCTGA
AAGATGCTTTCCAGACGAGCCTTATTTTCGCGGCCATTGTCTACAGCGTG
CTGCAATTGGTACTGTAG
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