Trimin1|352175|estExt_Genemark1.C_Ctg_1110018 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352175
Unique Name	Trimin1\|352175\|estExt_Genemark1.C_Ctg_1110018
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	250

Homology

[Close]

BLAST of jgi.p|Trimin1|352175 vs. uniprot
Match: A0A835ZN70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN70_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 1.250e-153
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0

Query:    1 MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTPFVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALKRAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEWAAAEAKAQGILEARRGAXXXXXXXXXXXXXPVAEAGAADS 249
            MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTPFVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALKRAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEWAAAEAKAQGILEARRGAXXXXXXXXXXXXXPVAEAGAADS
Sbjct:    1 MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTPFVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALKRAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEWAAAEAKAQGILEARRGAXXXXXXXXXXXXXPVAEAGAADS 249

[Close]

BLAST of jgi.p|Trimin1|352175 vs. uniprot
Match: D7FJ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ44_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-10
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0

Query:  139 RLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEW 209
            RLGII   VPRERR+A+LQRLF+L QAP +E   +V  V+E  + +    + D NLL TW  +RE RA  W
Sbjct:  238 RLGIIRKTVPRERRMAVLQRLFHLAQAPADEVERLVTCVKELKNNSSPAEIRDVNLLKTWQGVREERAPAW 308

[Close]

BLAST of jgi.p|Trimin1|352175 vs. uniprot
Match: A0A6H5KGI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.340e-10
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0

Query:  139 RLGIIMNAVPRERRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSAIREARAAEW 209
            RLGII   VPRERR+A+LQRLF+L QAP EE   +V  V+     +    + D NLL TW  +RE RA  W
Sbjct:  176 RLGIIRKTVPRERRMAVLQRLFHLAQAPAEEVERLVTHVKGLKSNSSPAEIRDVNLLKTWQGVREERATAW 246

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352175 vs. uniprot

BLAST of jgi.p|Trimin1|352175 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835ZN70_9STRA	1.250e-153	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FJ44_ECTSI	1.600e-10	50.70	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KGI2_9PHAE	7.340e-10	50.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_111	contig	Contig_111:133282..135074 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352175	mRNA_11874	Tribonema minus UTEX_B_3156	mRNA	Contig_111 133282..135074 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352175|estExt_Genemark1.C_Ctg_1110018 ID=Trimin1|352175|estExt_Genemark1.C_Ctg_1110018|Name=jgi.p|Trimin1|352175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
MADADPVAEATLAADATAETNVKPKRCVLSDEERAVVDSCRVILGDVFTP
FVSLESAVAELESDPAPQAEIMYWKCLADTLVVYYSQTLMLPQAMAAALK
RAEAGGGGTAGDDAGGDVLGGVEGDLQRLKEFDVTDEQRLGIIMNAVPRE
RRVALLQRLFYLTQAPPEEFAPVVQLVREQGDAAGREAVVDANLLSTWSA
IREARAAEWAAAEAKAQGILEARRGAERGGGEGGEGGGEPVAEAGAADS*