mRNA_8716 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168941
Unique NamemRNA_8716
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A835YXA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA6_9STRA)

HSP 1 Score: 528 bits (1360), Expect = 2.170e-189
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1 
Query:    1 MSVKKKQGRPKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVKLL 807
            MSVKKKQGRPKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVKLL
Sbjct:    1 MSVKKKQGRPKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVKLL 269
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: W7TRZ1_9STRA (Mitochondrial ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.220e-28
Identity = 89/263 (33.84%), Postives = 127/263 (48.29%), Query Frame = 1 
Query:    1 MSVKKKQGRPKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEP-WRFVTAAVQRGGXXXXXXXXX--ETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGA---FGEKVFLMRAQIVVGEPAFARRGVQR-VWVAKEELAEY 768
            +  KKK+G  KRP    ++   +L  R+ ++ + E A + + L W   AA ++ER P+++ EPEDWE A+M+   E     G+ +P EL++  +  +    S  E     P  LAPRVT+AD   DRTTL+RAL  R+FLL R       W    A ++ GG           +T  A   R L       VP        N P G+ WR+  E      G    +G+KVF  RAQ + G       GV+  VWV +EE+ EY
Sbjct:   86 LKPKKKKG--KRP----SSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIA-KHGKVFPPELNLMGQAAELDR-SDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPS-------NAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEY 333
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A7S2Q3E7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3E7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.510e-21
Identity = 81/263 (30.80%), Postives = 120/263 (45.63%), Query Frame = 1 
Query:   43 IRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIW---REDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEE--ERAARGAFGEKVFLMRAQIV-----VGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVK 801
            ++ T   +W         K +   +  G  W    AV++ERLPVV P+ E+WE  + D + +F    G++YPAE        +  D    S  +     P   APR TEADASGD  TL R L  R++L  + SD E       +  R           E+L AAAERA++ ++  D+   K W   N P  V+ R++ ++  E      FGEK+F  R Q       V E A   +     W+ +EE+ +    ERG++  K
Sbjct:  130 VKRTLFRSWWDKEMMYHNKLQRMAKKEGKPWRVRVAVMVERLPVVTPDEEEWEQDYND-LRDFLETFGKEYPAETGFMFAPDKSEDHVVESDEDMIAGLPFTPAPRETEADASGDVKTLDRQLKTRLYLTIK-SDTEG----NLSGPRWTLPSTIAETNESLLAAAERAVSDSVGSDL---KLWCPSNAPMAVNMRVYNDKLPESFRENYFGEKIFYYRVQYDNTGGDVDEAAM--KADDYAWLTREEVVDRIEEERGKHQAK 381
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A7S2XUX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUX8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.720e-19
Identity = 75/246 (30.49%), Postives = 111/246 (45.12%), Query Frame = 1 
Query:   79 RSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPS--FREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEP-----WRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARG-AFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQY 792
            R  + +K E   E  GL W    AV++E LP ++P+ E WE  W D   E+  + GR +P+E ++     +A      +    EA   P APR+TEAD SGDR T++R L  R  L+ +     P     W F  A V+             T+   AER +A      +  F  W +G  P    W  +  ++  AR  A+GE+VF    Q + G      R +   WV ++EL +YF  +   Y
Sbjct:   62 RMEDFRKHEMRAEKMGLPWRNITAVVVEALPDIIPDKEPWEKDWEDLRDEYDLH-GRMFPSEYNLMDPTMEAVKEEDLYALAKEAGFEP-APRITEADKSGDRRTMNRRLWERRLLVVKRDQKRPGPMSQWCFPFAPVRE---------EDHTMMEVAERVVAEQCGRKLETF--W-LGRAPVAWWWHPYPNDKIRARAKAYGEQVFFYSCQYIDGNFKLPDRLIDHAWVTRDELQDYFPEDFSTY 293
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A830C868_9LAMI (39S ribosomal protein l46 mitochondrial n=2 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830C868_9LAMI)

HSP 1 Score: 90.5 bits (223), Expect = 4.420e-18
Identity = 81/234 (34.62%), Postives = 116/234 (49.57%), Query Frame = 1 
Query:  121 SGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLL----ERASDAEP-WRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVKLL 807
            SG D +  AAVL ERLPVV+P+ +    A+ +F   +R    R+YP   + + +  DA       Q +  P   APR+TEAD SGD+ +LHRALDRR++LL       SD +P W F   A +            +TLR  AE AL + +  D+     + VGN P G    I   E  ++      K F  ++Q++        +    VWV K+EL EYF  E+ QY  K++
Sbjct:   27 SGGDEKIVAAVLFERLPVVIPKIDPVVYAFQEFSYRWRQQYRREYP---EAFLKKADARGKGDY-QIDFTP---APRITEADKSGDKRSLHRALDRRLYLLIYGPAHGSDGKPVWHFPEKAYES----------EKTLRKCAESALQSVIG-DLS--HTYFVGNAPMG-HMNIQPSENDSSL-----KRFFFKSQVIATNKFNIEKCEDYVWVTKDELLEYF-PEQAQYLNKMI 233
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A1Z5JLV9_FISSO (MRP-L46 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLV9_FISSO)

HSP 1 Score: 89.4 bits (220), Expect = 4.320e-17
Identity = 71/246 (28.86%), Postives = 113/246 (45.93%), Query Frame = 1 
Query:  109 AREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACP-------IPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRV----WVAKEELAEYFGAERGQ--YYVKLL 807
            AR+A GL W+ H AV++ERL VV+P+ E+WE+ + D  ++ +   G+ YP  L     +  A         +             APR+TEAD SGD  T  R L   I+L     +   W+F T A++            E L  AA+RA+  A+  ++   ++W   N P  V+   F  E++     +G K F ++ Q   G+    + G Q+V    W+ + E+ E    + G   +Y  LL
Sbjct:   91 ARQA-GLGWKIHVAVIVERLNVVLPDQEEWEMEFEDLQNQLQ-QFGKDYPKGLFPSAAEHSAQETHLTRNDDILEYLEKVKGFTPAPRITEADKSGDVRTTGRKLKTSIYLT--VQEDSTWKFPTVALK----------DDEMLLDAAKRAIPEAVGEEL---EFWCPSNCPVAVEMMAFPTEQQQKEQQYGSKTFFIKVQFDEGK---VKTGTQKVTDFAWLDRSEIVERVEKQNGDGAFYKYLL 316
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A8K1C2Z6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2Z6_PYTOL)

HSP 1 Score: 87.4 bits (215), Expect = 1.770e-16
Identity = 75/244 (30.74%), Postives = 113/244 (46.31%), Query Frame = 1 
Query:  124 GLDWEYHAAVLLERLPVVVPEPEDWEVAWMDF-MSEFRWNCGRQYPAELDIWRED--------RDAPAPSFREQHE---ACPIPLAPRVTEADASGDRTTLHRALDRRIFLLER--ASDAE-PWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAF-ARRGVQRVWVAKEELAEYFGAERGQYYVKLL 807
            G  W   +A +LERLPV+ P+ EDWE   +DF M +      +    E D W  +         +AP P+  +  E        LAPR TE D + +R +L+RAL  R+FL+ +  A DA+ PW F     Q            E +R AA R L      ++   + + VG  P G    +  +  + A G  G KVF  ++Q++VG+    A      +WV + EL EYF  +  +Y  K++
Sbjct:   72 GKKWRVLSASVLERLPVIQPDDEDWE---LDFDMMQHEIALRQDQRLEDDFWFMEPGERHITPEEAPWPNTPDNPEDIVGAGFHLAPRETEDDKNDNRKSLNRALKGRVFLIVKNNAPDAKFPWFFPVGEKQ----------DEEKMRDAALRQLGEYCGSEL---EVYPVGYAPMGYVKYLHDDATKQASGFDGTKVFFYKSQVIVGDVKLNAAHASDYLWVTQSELNEYFEKDVAEYLTKMV 299
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A2D4C5V0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5V0_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 2.520e-15
Identity = 82/277 (29.60%), Postives = 118/277 (42.60%), Query Frame = 1 
Query:   28 PKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWRED--------RDAPAPSFREQHE---ACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAE-----PWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAF-ARRGVQRVWVAKEELAEYFGAERGQYYVKLL 807
            P RP+++  N   +LG    E           G  W   +A +LERLPV+ P+PEDWEV +     E      ++   E D W  +         +AP P+  E  E        LAPR TE D + +R +L+RAL  R+FLL + ++       PW F                   T + A E+   AAL     GF        P G          +AA G  G KVF  +AQ+  G+    A +    +WV + ELAEYF  +  +Y +K++
Sbjct:  299 PLRPKVQRGN---YLGATPAE----------DGKTWRVLSAGVLERLPVIQPDPEDWEVDFALVQHEIALKNSQRL--EDDFWFMEPGERHITPEEAPLPNAEEDPEEIVGAGFHLAPRETEDDRTDNRKSLNRALKGRVFLLVQPTEQATPLPAPWFFPL-----------------TEKKADEKMRDAALAVHPVGFA-------PMGHLQFEHDAATKAATGVDGTKVFFYKAQVRFGDVELNAAKSSDYLWVTQRELAEYFEKDVAEYLIKMV 536
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: A0A6I9RKP9_ELAGV (39S ribosomal protein L46, mitochondrial n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RKP9_ELAGV)

HSP 1 Score: 82.8 bits (203), Expect = 2.950e-15
Identity = 72/228 (31.58%), Postives = 113/228 (49.56%), Query Frame = 1 
Query:  145 AAVLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERAS-----DAEP-WRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKY-WHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAKEELAEYFGAERGQYYVKLL 807
            AAVL ERLPVV+P+ +    A+ +F   +R    R+YP E+ + + D        + +++   +P APR+TEAD + DR +L RALDRR++LL   S     D +P W F     +            ETLR  AE AL + L     G ++ + VGN P      +  +E  +   +F    F  ++Q++        +    VWV K+EL EYF  E+  ++ K++
Sbjct:   28 AAVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYRRRYPDEV-LGKGDARG-----KGEYQIDYVP-APRITEADKTNDRRSLQRALDRRLYLLLNGSTYGAPDKKPVWHFPEKIYEN----------EETLRLCAESALRSVLG----GLQHTYFVGNAPM-AHMTVEPKEHSSDTPSFER--FFFKSQVIGTSKLHIEKCRDYVWVTKDELMEYF-PEQADFFNKMI 230
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BLAST of jgi.p|Trimin1|168941 vs. uniprot
Match: E1ZJP2_CHLVA (MRP-L46 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJP2_CHLVA)

HSP 1 Score: 82.4 bits (202), Expect = 6.020e-15
Identity = 68/211 (32.23%), Postives = 99/211 (46.92%), Query Frame = 1 
Query:  154 LLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPAPSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLER---ASDAEPWRFVTAAVQRGGXXXXXXXXXETLRAAAERALAAALRPDVPGFKYWHVGNGPAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGV---QRVWVAKEELAEY 768
            +LERLPV++P+P +WE    ++         +  P +  +  +D +  A     ++E      APR+T AD + DR +L R LD+R+F+L R    S    W  +    Q G          ET+R  AERALA  +   V   + + VGN PAG            A G  G  +F  R Q++ G P   R G    + +WVAK+EL EY
Sbjct:   61 VLERLPVIIPDPPEWEQEHREWQQAITEKYFKVLPKDF-VELKDSERQADDAGARYEP-----APRITAADKANDRRSLQRRLDQRLFMLVRPKGGSGGGAWSLMQRENQEG----------ETMRQTAERALAECVDESV--VQPYFVGNAPAG----------HVALGEAGT-LFFHRCQLIQGVPVL-RGGSGYSEHLWVAKDELPEY 241
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168941 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXA6_9STRA2.170e-189100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TRZ1_9STRA6.220e-2833.84Mitochondrial ribosomal protein l46 n=2 Tax=Nannoc... [more]
A0A7S2Q3E7_9STRA2.510e-2130.80Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2XUX8_9STRA2.720e-1930.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A830C868_9LAMI4.420e-1834.6239S ribosomal protein l46 mitochondrial n=2 Tax=Ph... [more]
A0A1Z5JLV9_FISSO4.320e-1728.86MRP-L46 domain-containing protein n=2 Tax=Fistulif... [more]
A0A8K1C2Z6_PYTOL1.770e-1630.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C5V0_PYTIN2.520e-1529.60Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6I9RKP9_ELAGV2.950e-1531.5839S ribosomal protein L46, mitochondrial n=3 Tax=A... [more]
E1ZJP2_CHLVA6.020e-1532.23MRP-L46 domain-containing protein n=1 Tax=Chlorell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_61contigContig_61:473914..475536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168941|e_gw1.61.169.1
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
KEGG rclassRC02416
KEGG ReactionR02085
KEGG ModuleM00036
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
EC2.7.11.1,4.2.1.18
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred nameMRPL46
Descriptionmitochondrial translation
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4548@1|root,KOG4548@2759|Eukaryota
Evalue5.23e-42
Seed ortholog2880.D7G8Q3
Hectar predicted targeting categoryother localisation
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Ec32 orthologEc-22_002600.1
TranscriptId169263
TrackFilteredModels1
ProteinId168941
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168941gene_8716Tribonema minus UTEX_B_3156 geneContig_61 473914..475536 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8716_1exon_8716_1Tribonema minus UTEX_B_3156 exonContig_61 473914..474114 +
exon_8716_2exon_8716_2Tribonema minus UTEX_B_3156 exonContig_61 474928..475536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8716CDS_8716Tribonema minus UTEX_B_3156 CDSContig_61 473914..474114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168941Trimin1|168941|e_gw1.61.169.1Tribonema minus UTEX_B_3156 polypeptideContig_61 473914..475536 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8716 ID=mRNA_8716|Name=jgi.p|Trimin1|168941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_61:473914..475536+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCAAGAAGAAACAGGGACGGCCAAAGCGGCCTCGCATAAGGCT
GACCAACAGGGAAACGTGGTTAGGTGGACGGTCTTTCGAGATGAAGAAGG
CAGAGGAAGCACGGGAGGCGAGCGGGCTGGACTGGGAGTACCATGCAGCG
GTTTTGCTTGAGCGATTGCCTGTCGTAGTGCCGGAGCCAGAAGACTGGGA
GGTCGCGTGGATGGACTTCATGAGCGAGTTCCGCTGGAACTGCGGCCGCC
AGTACCCCGCGGAGCTCGACATCTGGCGCGAAGACCGCGACGCCCCCGCC
CCCTCCTTCCGCGAGCAGCACGAGGCCTGCCCGATACCGCTGGCGCCGCG
CGTAACAGAGGCCGACGCCAGCGGCGACCGCACGACGCTCCACCGCGCCC
TCGACCGCCGCATCTTCCTCCTGGAGCGCGCCTCCGACGCGGAGCCGTGG
CGCTTCGTAACCGCCGCCGTGCAGCGCGGCGGCAGCGGCGGCGGCGACGG
CGGCGGCGGCGAGACGCTGCGCGCGGCCGCGGAGCGCGCGCTCGCCGCGG
CGCTGCGCCCCGATGTCCCGGGGTTCAAGTACTGGCACGTGGGGAACGGT
CCTGCGGGGGTGGACTGGCGCATTTTTGGGGAGGAGGAGAGGGCGGCGCG
GGGGGCGTTCGGGGAGAAGGTGTTTCTCATGCGCGCGCAGATTGTGGTGG
GGGAGCCGGCGTTTGCGCGGCGCGGCGTGCAGCGCGTGTGGGTCGCCAAG
GAGGAGCTCGCGGAGTACTTTGGCGCGGAGCGCGGGCAGTACTACGTGAA
GTTGCTGTAA
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protein sequence of jgi.p|Trimin1|168941

>Trimin1|168941|e_gw1.61.169.1 ID=Trimin1|168941|e_gw1.61.169.1|Name=jgi.p|Trimin1|168941|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MSVKKKQGRPKRPRIRLTNRETWLGGRSFEMKKAEEAREASGLDWEYHAA
VLLERLPVVVPEPEDWEVAWMDFMSEFRWNCGRQYPAELDIWREDRDAPA
PSFREQHEACPIPLAPRVTEADASGDRTTLHRALDRRIFLLERASDAEPW
RFVTAAVQRGGSGGGDGGGGETLRAAAERALAAALRPDVPGFKYWHVGNG
PAGVDWRIFGEEERAARGAFGEKVFLMRAQIVVGEPAFARRGVQRVWVAK
EELAEYFGAERGQYYVKLL*
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mRNA from alignment at Contig_61:473914..475536+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8716 ID=mRNA_8716|Name=jgi.p|Trimin1|168941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1623bp|location=Sequence derived from alignment at Contig_61:473914..475536+ (Tribonema minus UTEX_B_3156 )
ATGTCTGTCAAGAAGAAACAGGGACGGCCAAAGCGGCCTCGCATAAGGCT
GACCAACAGGGAAACGTGGTTAGGTGGACGGTCTTTCGAGATGAAGAAGG
CAGAGGAAGCACGGGAGGCGAGCGGGCTGGACTGGGAGTACCATGCAGCG
GTTTTGCTTGAGCGATTGCCTGTCGTAGTGCCGGAGCCAGAAGACTGGGA
GGTACGCTGTCACGTACTGCTACCAACTGTGTTCACCTCATTTTGTGGCA
CTCGTTGCATACGGAAAAGTCGCACATCTTGAGCCTCGCCCCCTGCACGG
CCACGGCAGTAGGCCGGTCAAGATATCACATCTAGTCCACACTCACCCGA
CGTACCCAGCTGTGTGTCTCTAGAGCCTGGTGCATCCATTGCGCCTTTAG
CTTGACAGCAGTGGCTTTCAAAGCGCTGTAATGAGTAGCTTATACCTTGG
AATCTGTCACTGATAAAATTTGCAATCTGGGTGCATGGCCAGCATTGACG
AACACTACCACTTTCACCAGGGGGCCGGCCACCATATTGATCTGGGCAGG
ATCGTGTACCTCCCGCAACCTACTCAGGTCACAGAAAACTGTGTCAATCA
ATCCTGTGATCGCCTGTGCGGCACCAGCGTTGGGCGTAACTTCAAGTGCA
CCACTCCTGCGAACTCGCACTCAGGTCACGAGGCAGCTGACGCCAGTCAC
AGCCGTGCTGTCACCAGACACGAATGAAACGGTCTGATGCTGCCCCCCGC
GCCACCACTTCAGCGTGCACCGACGCCCGGTGTCAAAAGCCCGTACACCA
TCATGCCTGCAAGTGCTGCACCTCACTTATGCGGCAAGACAATCTCATCC
ATCACTGCGCACAACCTGCCAAACGACGCATCCAGTGCGCACATGACCCC
TTGATGCCCCCATCACCGTGCACAGCCTGTCAACTCAGGTCATCAGAGTA
CCTACTCGTACACGTAACATGCACACAACCCCCCCGGTCCCCCCCTTCCC
CCCTCAAACCCCAGGTCGCGTGGATGGACTTCATGAGCGAGTTCCGCTGG
AACTGCGGCCGCCAGTACCCCGCGGAGCTCGACATCTGGCGCGAAGACCG
CGACGCCCCCGCCCCCTCCTTCCGCGAGCAGCACGAGGCCTGCCCGATAC
CGCTGGCGCCGCGCGTAACAGAGGCCGACGCCAGCGGCGACCGCACGACG
CTCCACCGCGCCCTCGACCGCCGCATCTTCCTCCTGGAGCGCGCCTCCGA
CGCGGAGCCGTGGCGCTTCGTAACCGCCGCCGTGCAGCGCGGCGGCAGCG
GCGGCGGCGACGGCGGCGGCGGCGAGACGCTGCGCGCGGCCGCGGAGCGC
GCGCTCGCCGCGGCGCTGCGCCCCGATGTCCCGGGGTTCAAGTACTGGCA
CGTGGGGAACGGTCCTGCGGGGGTGGACTGGCGCATTTTTGGGGAGGAGG
AGAGGGCGGCGCGGGGGGCGTTCGGGGAGAAGGTGTTTCTCATGCGCGCG
CAGATTGTGGTGGGGGAGCCGGCGTTTGCGCGGCGCGGCGTGCAGCGCGT
GTGGGTCGCCAAGGAGGAGCTCGCGGAGTACTTTGGCGCGGAGCGCGGGC
AGTACTACGTGAAGTTGCTGTAA
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Coding sequence (CDS) from alignment at Contig_61:473914..475536+

>mRNA_8716 ID=mRNA_8716|Name=jgi.p|Trimin1|168941|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_61:473914..475536+ (Tribonema minus UTEX_B_3156 )
ATGTCTGTCAAGAAGAAACAGGGACGGCCAAAGCGGCCTCGCATAAGGCT
GACCAACAGGGAAACGTGGTTAGGTGGACGGTCTTTCGAGATGAAGAAGG
CAGAGGAAGCACGGGAGGCGAGCGGGCTGGACTGGGAGTACCATGCAGCG
GTTTTGCTTGAGCGATTGCCTGTCGTAGTGCCGGAGCCAGAAGACTGGGA
GGTCGCGTGGATGGACTTCATGAGCGAGTTCCGCTGGAACTGCGGCCGCC
AGTACCCCGCGGAGCTCGACATCTGGCGCGAAGACCGCGACGCCCCCGCC
CCCTCCTTCCGCGAGCAGCACGAGGCCTGCCCGATACCGCTGGCGCCGCG
CGTAACAGAGGCCGACGCCAGCGGCGACCGCACGACGCTCCACCGCGCCC
TCGACCGCCGCATCTTCCTCCTGGAGCGCGCCTCCGACGCGGAGCCGTGG
CGCTTCGTAACCGCCGCCGTGCAGCGCGGCGGCAGCGGCGGCGGCGACGG
CGGCGGCGGCGAGACGCTGCGCGCGGCCGCGGAGCGCGCGCTCGCCGCGG
CGCTGCGCCCCGATGTCCCGGGGTTCAAGTACTGGCACGTGGGGAACGGT
CCTGCGGGGGTGGACTGGCGCATTTTTGGGGAGGAGGAGAGGGCGGCGCG
GGGGGCGTTCGGGGAGAAGGTGTTTCTCATGCGCGCGCAGATTGTGGTGG
GGGAGCCGGCGTTTGCGCGGCGCGGCGTGCAGCGCGTGTGGGTCGCCAAG
GAGGAGCTCGCGGAGTACTTTGGCGCGGAGCGCGGGCAGTACTACGTGAA
GTTGCTGTAA
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