Trimin1|350318|estExt_Genemark1.C_Ctg_600095 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350318
Unique NameTrimin1|350318|estExt_Genemark1.C_Ctg_600095
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length269
Homology
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A835YPW5_9STRA (GOLD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW5_9STRA)

HSP 1 Score: 477 bits (1228), Expect = 2.640e-169
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA 268
            MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA
Sbjct:    1 MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA 268          
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2FQ25_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ25_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.280e-19
Identity = 69/235 (29.36%), Postives = 113/235 (48.09%), Query Frame = 0
Query:   22 PLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITAD--AAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRA 254
            PL + LEP    C +E + P+D  D TVE+FV  G +L V +T+ GP        P      A+   +V++   E + D S         F +  G Y +C+ N     +     K+VQ+ +R+ A++ ++     ++               KG+ A   ++  L   + RL+  L  V  +Q +ER R AVH+A  Q ++  M+LGS +ET+VF+    FQ+ F+  WF G+A
Sbjct:   48 PLGLDLEPLATRCVHEFI-PQD-ADGTVELFVESGGKLEVHMTIEGPMATGWDKIPEAGESTAMLFDKVISNGREEDFDDSFLFS-----FKSDGGAYRVCVSND----MNRVANKVVQVDIRSSAKVISENPIKISSDPKKAEEARLAKEEAKGSEARQAEVAVLEKSIRRLKRGLRKVQQQQQQERHRQAVHTAVNQDSNNHMVLGSLVETVVFVATAAFQIIFVRNWFDGKA 271          
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2SPS2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPS2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.420e-19
Identity = 73/245 (29.80%), Postives = 110/245 (44.90%), Query Frame = 0
Query:   11 SGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQA-GHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATD-DLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGR 253
            +GL   +    PL V L P  K C +E    + EG  TVE+FV  G RL V LTV GP     + G P    +      EVV      E +   F  ++   F +  GVY  C+ N    V+     K+VQ+ +R+            +              K A    D D+  L   + R++  L  ++ +Q ++R R AVH+A  +  +  M++GS +ET+VFIGA  FQ+ F+  WF  +
Sbjct:   23 AGLGAASAATMPLAVSLPPRSKRCVHEDFPAKSEG--TVELFVESGGRLEVHLTVEGPMGSTDSQGVPQPGTETGTILDEVVTNGHGQEEE---FDDSYLFSFKSDGGVYRACVANDMNHVV----TKVVQIDIRSSFASPTPVGEPIKLLSSGAREDLSEEEKKAKKRQDADVATLQESIRRIKGGLKTIERQQKQDRHRQAVHTAVNEDNNNHMVIGSLIETVVFIGAAAFQIIFVRNWFENK 258          
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2C741_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C741_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.770e-17
Identity = 67/232 (28.88%), Postives = 107/232 (46.12%), Query Frame = 0
Query:   22 PLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGR 253
            PL + L P  + C  E +    +G  T+E+FV  G +LSV + V+GP    + G P  S K      ++V    E + D S F       F +  G Y +C+ N     +     K+VQ+ +R       D                    K      +++ AL  ++ RL+  L  V  +Q ++R R AVH+A  Q ++  M++GS +ETL+F+G   FQV F+ +WF G+
Sbjct:   36 PLGISLPPMTERCIIEDIPESHQG--TLEIFVESGGKLSVHVVVQGPLIPGKNGIPEPSPKTITLLDDIVTNGREEDFDDSFFFS-----FPSRGGSYRVCIAND----MNRIATKMVQVDLRKSVASQNDKI----EDKDAIESSGSKDGKATSKEPEEVLALEKRIKRLKKSLHKVQRQQEQDRHRQAVHTAVNQDSNNHMVVGSLIETLIFMGTASFQVIFVRKWFAGK 252          
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A4D9D7I6_9STRA (GOLD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7I6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.950e-16
Identity = 79/265 (29.81%), Postives = 113/265 (42.64%), Query Frame = 0
Query:   22 PLTVVLEPDEKACFYEIVTPEDEGDRTVEVFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHDPSMF-GQTHKQGFN-----------AAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADAR------ITADAAAAARXXXXXXXXXXXXXXKGAPAATDDLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGRAGGGAGSARGTHQWA 268
            PL++ + P +K C Y+     + G    EVFV+ G  L +G++V GPF     G P+   K   ET  V    D +    S F  Q H  G             A  G Y +CLDN+    +     K+++    A            DAA AA               K +  A  DL  L     R+   L  V  KQ +ER RLA+ +A+ Q+    M++ S  ET+VFIG  +FQ+ ++ RWF GR     G    + +WA
Sbjct:   29 PLSLEVPPRDKVCLYQYYDVGETGK--AEVFVVNGGNLDIGVSVEGPFTDDVHGTPS---KTTQETKTVY---DAIVASSSAFLNQVHPAGVTVSPDGVEISWPAQPGAYALCLDNT----MSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTISENIKQSYKA--DLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFIGVSLFQLFWVRRWFEGR-----GLRARSREWA 274          
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Match: A0A7S2WSX9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSX9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.030e-6
Identity = 39/138 (28.26%), Postives = 65/138 (47.10%), Query Frame = 0
Query:  117 GVYEICLDNSGPGVLGSPGRKLVQLQVRADARITADAAAAARXXXXXXXXXXXXXXKGAPAATD-DLGALATQLLRLRAELDAVDAKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWFRGR 253
            GVY  C+ N    V+     K+VQ+ +R+            +              K A    D D+  L   + R++  L  ++ +Q ++R R AVH+A  +  +  M++GS +ET+VFIGA  FQ+ F+  WF  +
Sbjct:    5 GVYRACVANDMNHVV----TKVVQIDIRSSFASPTPVGEPIKLLSSGAREDLSEEEKKAKKRQDADVATLQESIRRIKGGLKTIERQQKQDRHRQAVHTAVNEDNNNHMVIGSLIETVVFIGAAAFQIIFVRNWFENK 138          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350318 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YPW5_9STRA2.640e-169100.00GOLD domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2FQ25_9STRA1.280e-1929.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SPS2_9STRA7.420e-1929.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C741_9STRA1.770e-1728.88Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A4D9D7I6_9STRA5.950e-1629.81GOLD domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2WSX9_9STRA9.030e-628.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 22..251
e-value: 1.1E-9
score: 48.2
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 23..251
e-value: 3.3E-13
score: 50.0
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..15
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:654077..655512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350318mRNA_6839Tribonema minus UTEX_B_3156 mRNAContig_60 653900..655512 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350318|estExt_Genemark1.C_Ctg_600095 ID=Trimin1|350318|estExt_Genemark1.C_Ctg_600095|Name=jgi.p|Trimin1|350318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
MRLALWLTLVSGLACKALCMEPLTVVLEPDEKACFYEIVTPEDEGDRTVE
VFVLRGNRLSVGLTVRGPFKQQQAGHPATSMKAALETSEVVAEQDEMEHD
PSMFGQTHKQGFNAAAGVYEICLDNSGPGVLGSPGRKLVQLQVRADARIT
ADAAAAARERESARLAASAAAAKGAPAATDDLGALATQLLRLRAELDAVD
AKQARERRRLAVHSASEQRASAGMMLGSALETLVFIGAGVFQVAFIARWF
RGRAGGGAGSARGTHQWA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom