mRNA_6773 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A836CAB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB8_9STRA) HSP 1 Score: 520 bits (1340), Expect = 2.830e-186 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
Query: 1 MKESSADELKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLISATKKPSSVKPSSGSAKKKGXXXXXXXXXXXXSGASQPTMKAFFNSVS 813
MKESSADELKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLISATKKPSSVKPSSGSAKKKGXXXXXXXXXXXXSGASQPTMKAFFNSVS
Sbjct: 1 MKESSADELKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLISATKKPSSVKPSSGSAKKKGXXXXXXXXXXXXSGASQPTMKAFFNSVS 271
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A7V3SAN8_9CHLR (DUF72 domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7V3SAN8_9CHLR) HSP 1 Score: 147 bits (371), Expect = 1.120e-39 Identity = 90/214 (42.06%), Postives = 127/214 (59.35%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTL 666
L++YG + EINS+FY LP + A+WR++ P F F++KVS+ ITH +L E+A Q F+ARA L KLGPCL+QLPPS+ +D RL+ L+ P + EFR+ +WF ++++LR RN AL GS T E TAD++Y R+HG RG + D EL ++AE+ A R A R Y++F ND A++NAQ L
Sbjct: 31 LEFYGRHFSTLEINSSFYHLPTEKAFARWRDSSPAGFVFAVKVSRFITHIKKLADCEEALQTFFARARV-LGEKLGPCLYQLPPSMGRDDERLKAFVGLL---PPDLRHVFEFRNDSWFDPGIYKILRDRNIALC--IYDMGSRPTPCETTADFSYIRFHGSASRRGC---YSDVELLQWAERIA-RMEAQTRVVYIYFNNDAQGFALKNAQRL 234
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A850M1H6_9ARCH (DUF72 domain-containing protein n=1 Tax=Candidatus Helarchaeota archaeon TaxID=2719382 RepID=A0A850M1H6_9ARCH) HSP 1 Score: 140 bits (353), Expect = 5.650e-37 Identity = 84/217 (38.71%), Postives = 121/217 (55.76%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQ--DVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLI 669
L+YY + S EINSTFY +P+ +T WR VPE F F +K S+ ITH RL+GIE+ + F G + KLGP LFQ PPSL + L DL V+ +S +I EFR+ TWFC+++F++L+ N ++ FS + TAD+ Y R HG + + + + D+EL+ AEK + + YV+F ND AV+NA L+
Sbjct: 33 LEYYSNYFDSVEINSTFYRIPKEKTVENWRKRVPENFTFIVKASRIITHLKRLKGIEEILKNFLD-ICSGFEEKLGPILFQTPPSLKINKDHLLDLLDNVKLHPLSKNLRIVFEFRNKTWFCKEIFEILKKANCSIC--FSDMLGFEIDEPVTADFVYIRRHGAQER--YSSSYSDEELKPDAEKIKKWVKEN-KDVYVYFNNDAYGYAVKNALRLV 243
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A7S4J072_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J072_9STRA) HSP 1 Score: 140 bits (352), Expect = 6.090e-37 Identity = 69/155 (44.52%), Postives = 95/155 (61.29%), Query Frame = 1
Query: 22 ELKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAE-GLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQA-QIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTA 480
EL++Y V + EIN+TF+G+PR ET W F+F KV ++ITHDARL G+ + W+ F R + G LGP LFQLPPSL KD+++L + DV+P + A EFR+ TW+C +V+++LR WA+ EN SPD S E TA
Sbjct: 87 ELRHYSGVFSAVEINATFHGIPREETVDSWSRDAKSGFQFGWKVPRAITHDARLSGLGETWEVFLDRISRIGETRSLGPILFQLPPSLVKDISKLDAIA----DVTPSGMKFAFEFRNETWYCSEVYEVLRRMQWAICENISPDSSTIRSMEVTA 237
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A1W1IAH5_9BACT (Uncharacterized protein n=1 Tax=Nitrospira japonica TaxID=1325564 RepID=A0A1W1IAH5_9BACT) HSP 1 Score: 137 bits (344), Expect = 1.840e-35 Identity = 83/222 (37.39%), Postives = 120/222 (54.05%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLISATKKPS 690
L+++ P+ E+N +FY LP+ T KW + VP+ F FS+K S+ ITH RL+ +ED W+ F + A L LGP LFQ P S +D RL+D ++V+ S + ++ EFR +WF V++LL AL G D TAD+ Y R+HG +R +++ EL A K R G A YV+F ND + AV NA+T + +KPS
Sbjct: 44 LEFFTGQFPTTEVNYSFYHLPKPSTYEKWASQVPQDFIFSVKASRYITHVKRLKDVEDPWRLFLSHA-RSLGTHLGPILFQFPESFHRDDDRLKDFLEMVRRGSSRLRLVCEFRHESWFSTGVYRLLNRLGAALC--IGDSGRYPRRDVVTADFAYVRFHGR--SRLFASNYTRRELDEEARKVKGYLRDGYDA-YVYFNNDAEGHAVANAKTFMGLIEKPS 259
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A0L0DM04_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DM04_THETB) HSP 1 Score: 139 bits (350), Expect = 1.890e-35 Identity = 80/220 (36.36%), Postives = 126/220 (57.27%), Query Frame = 1
Query: 22 ELKYYGSVLPSCEINSTFYGLPRTETCAKW-RNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQ-HKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQA--QIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLI 669
E +Y + P+CE+N++FYG+PR T W + A F++++KV KS+TH+++L D + + R A + LGP LFQLPP + + +LQ L ++ ++ + ++A EFR +WF DV+ +LRA NWALV + PD + +E TADWTY R+HG+ H ++ DDEL + + R A + + +F D +T + NA TLI
Sbjct: 40 EFFHYANRYPTCEMNTSFYGIPRESTIQGWAKQATGRSFQYAIKVPKSVTHESQLEDPGDTIRFLWKRLAPLRKVGALGPLLFQLPPRFARSLDKLQQLALVLHELDDKEHLRVAFEFRHPSWFRADVYAVLRANNWALVLSSHPD--LPWVEELTADWTYIRFHGI--RLLHEDNYTDDELTTFTTRIK-RWLADGKDVFAYFQFDKGSTGLNNAATLI 254
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A538MB24_9ACTN (DUF72 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538MB24_9ACTN) HSP 1 Score: 135 bits (339), Expect = 5.630e-35 Identity = 81/215 (37.67%), Postives = 117/215 (54.42%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQH-KLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTL 666
L++Y + E+N+TFY LPR A W P F F++K+S+ +TH RLR + + + FY+R + KLGP L+QLPP+ +D RL +L+ P + EFR +WF +DV++LLR ALV +P+ T E TADWT+ R+H RG +++ + EL +AE+ AR G Y +F ND AVRNA L
Sbjct: 30 LEFYARHFDTVEVNATFYRLPRESAAAAWERESPPGFLFTVKMSRYVTHIKRLRDLPPSLELFYSRIRPLAESPKLGPVLWQLPPTFRRDDERLAGALELL----PPGRHCFEFRHESWFVDDVYELLRRHGAALVIGDAPERPFQT-HELTADWTFIRFHHGT--RGRNSNYSERELEEWAERIERWARQGD--VYAYFNNDRSGYAVRNALWL 235
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: B5Y7T9_COPPD (Uncharacterized protein n=4 Tax=Coprothermobacter TaxID=68335 RepID=B5Y7T9_COPPD) HSP 1 Score: 135 bits (339), Expect = 6.250e-35 Identity = 86/216 (39.81%), Postives = 120/216 (55.56%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLIS 672
L +Y S S EINSTFY +PR+ T KW + P+ F FS+K K+ITH RL +E+ FY AA L HKLG L+QLPPSL KD+T L+ +L+ D P + A+E R +W +DVF+LL+ N A V + + + T TAD+ Y R HG + + + + DEL+ +A + YV+F ND + AV+NA L S
Sbjct: 35 LPFYASKFNSVEINSTFYHMPRSATVEKWLDCSPDDFVFSLKAPKTITHIKRLSDVEEVVNRFY-EAASVLAHKLGVVLYQLPPSLKKDLTLLEGFLKLL-DRKPGKK-AVELRHVSWVGDDVFELLKQHNVAFVVSHGDNYPLVTTP--TADFMYVRLHGYPEL--YRSSYSVDELQTWANLIRTWLEQD-KMVYVYFNNDAEGHAVKNALALKS 242
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A836RM75_9BACT (DUF72 domain-containing protein n=1 Tax=Candidatus Stahlbacteria bacterium TaxID=2528828 RepID=A0A836RM75_9BACT) HSP 1 Score: 134 bits (336), Expect = 1.450e-34 Identity = 81/215 (37.67%), Postives = 118/215 (54.88%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQDLCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTLI 669
L YY P+ E+N TFY LP+ ET KW N VP F F++K S+ ITH R++ +ED+ + F + GL KL L+QLPP + D+ R + ++ + + A EFR TWFC++V+++L+ N AL SPD T TADW Y R+HG + + +++ EL+ +AEK R G Y++F ND AV+N LI
Sbjct: 30 LGYYTEFFPTVELNVTFYRLPKKETFKKWYNEVPGDFVFALKGSRFITHIKRIKEVEDSVRIFKEQT-RGLGRKLEVILWQLPPQMKVDLDRFSRFIKSLRIIKNRH--AFEFRHKTWFCDEVYRILKDYNHALCIADSPDWK--TPLVVTADWFYLRFHGGSEL--YASEYSKQELKGWAEKIKGWKRDG----YIYFNNDYQGFAVKNGIELI 233
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Match: A0A661IQZ4_9DELT (DUF72 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661IQZ4_9DELT) HSP 1 Score: 131 bits (330), Expect = 1.350e-33 Identity = 83/215 (38.60%), Postives = 119/215 (55.35%), Query Frame = 1
Query: 25 LKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKVSKSITHDARLRGIEDAWQAFYARAAEGLQHKLGPCLFQLPPSLTKDMTRLQD-LCQLVQDVSPQAQIAMEFRSATWFCEDVFQLLRARNWALVENFSPDGSICTCDEQTADWTYSRWHGVIDARGHGTDFPDDELRRYAEKAAARARAGARAQYVFFGNDLDATAVRNAQTL 666
L+YY + E+NS FY LP +T W++ PE F F++K +++ITH RLR +E + F+ AA GL KLGP LFQLPPSL KD RL+ L QL P + A EFR +WFC+++++LLR R AL SP + T+ Y R HG + + + + ++ELR +A G +++F ND A AV+NA+ L
Sbjct: 31 LEYYAEHFSTVELNSPFYRLPSRKTFEGWKDRTPEGFVFAVKANRTITHLRRLREVEGELERFFY-AARGLGEKLGPILFQLPPSLRKDRARLEGFLAQL-----PPGRYAFEFRHPSWFCDEIYELLRERGIALCVADSP--RFPSVRLVTSSLLYVRLHGST--KLYASCYTEEELRDWASFIRGHLTQGD--AFIYFDNDYAAYAVQNAKEL 233 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350272 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6773 ID=mRNA_6773|Name=jgi.p|Trimin1|350272|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=816bp|location=Sequence derived from alignment at Contig_60:258137..260406- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAGGAGAGTTCAGCCGATGAGCTCAAGTACTACGGTTCCGTCCTGCCback to top protein sequence of jgi.p|Trimin1|350272 >Trimin1|350272|estExt_Genemark1.C_Ctg_600037 ID=Trimin1|350272|estExt_Genemark1.C_Ctg_600037|Name=jgi.p|Trimin1|350272|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp MKESSADELKYYGSVLPSCEINSTFYGLPRTETCAKWRNAVPEQFKFSMKback to top mRNA from alignment at Contig_60:258137..260406- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6773 ID=mRNA_6773|Name=jgi.p|Trimin1|350272|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2270bp|location=Sequence derived from alignment at Contig_60:258137..260406- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:258137..260406- >mRNA_6773 ID=mRNA_6773|Name=jgi.p|Trimin1|350272|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_60:258137..260406- (Tribonema minus UTEX_B_3156 )back to top |