mRNA_6846 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168875
Unique NamemRNA_6846
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A835YRT9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT9_9STRA)

HSP 1 Score: 557 bits (1436), Expect = 5.600e-201
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1 
Query:    1 MVPHLTMAATAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREGPYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALAGPGG 807
            MVPHLTMAATAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREGPYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALAGPGG
Sbjct:    1 MVPHLTMAATAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREGPYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALAGPGG 269
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A067CQC8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQC8_SAPPC)

HSP 1 Score: 296 bits (757), Expect = 9.060e-98
Identity = 153/257 (59.53%), Postives = 174/257 (67.70%), Query Frame = 1 
Query:   28 TAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            T ++ R  CR G +T  S   APG AQANL+ILP E A DF  FCQ NPKPCPLLEV   G    K  A G+DIRTDLPKYR+Y HGKLT EVTDI+  W D+    V FLLGCSFSF+ AL  AGL  RHL E  NVPMYRTNV C  AG F G LVVSMRPY+P D  +   IT R+P VHG+PV  G P  +G+ D+  P +GDAV +R GEVPVFWACG TPQ V +   P   + HAPGHMFV DV NE+LA
Sbjct:    3 TPSEVRAECRRGNLTSNSAGYAPGYAQANLVILPKEHAYDFLLFCQRNPKPCPLLEVSDVGCTEMKRTAPGSDIRTDLPKYRIYEHGKLTAEVTDIRDYWKDD---FVTFLLGCSFSFEGALENAGLRVRHLEEKCNVPMYRTNVPCDPAGVFSGNLVVSMRPYKPADAIKAAMITGRYPNVHGSPVHMGSPADIGVADINKPDYGDAVTMRDGEVPVFWACGVTPQAVLLASRPAFAITHAPGHMFVTDVPNESLA 256
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A1V9ZKG3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKG3_9STRA)

HSP 1 Score: 294 bits (753), Expect = 4.340e-97
Identity = 152/259 (58.69%), Postives = 174/259 (67.18%), Query Frame = 1 
Query:   22 AATAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREGPYTKV-LADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            A T  QFR  CR G     S   APG AQANL+ILP E A DF  FCQ NPKPCPLLEV   G       A G+DIRTDLPKYR+Y HGKLT E++DI+  W D+   LV FLLGCSFSF+ ALA AGL  RH  E  NVPMYRTNV C  AG F G+LVVSMRPY+P D  +   IT R+P VHG+PV  G+P  +GI D+  P +GD V +R GEVPVFWACG TPQ V +   P   + HAPGHMFV D+ NE+LA
Sbjct:    6 ATTPRQFRELCRSGSYADNSAGFAPGYAQANLVILPKEHAYDFLLFCQRNPKPCPLLEVSDVGAVEMTRTAPGSDIRTDLPKYRIYEHGKLTAEISDIRDYWRDD---LVTFLLGCSFSFEGALANAGLNVRHWEEKCNVPMYRTNVPCDSAGVFSGKLVVSMRPYKPRDGIKAAMITGRYPNVHGSPVHMGNPADIGIADINRPDYGDVVTIREGEVPVFWACGVTPQAVLLASRPAFAITHAPGHMFVTDIANESLA 261
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A7W0MDY9_9PLAN (Putative hydro-lyase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MDY9_9PLAN)

HSP 1 Score: 294 bits (753), Expect = 4.490e-97
Identity = 148/257 (57.59%), Postives = 179/257 (69.65%), Query Frame = 1 
Query:   28 TAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            +A+  RLACR  E+TG +   APG AQANL+ILP   A +F  FCQ NPKPCPLLEV   G P  K  A   D+RTDLP+YRV+  GKL EE  DI H W D+    V FL+GCSF+F+  L  AG+P RH+ EG NVPMYRTN+ C  AG FRGELVVSMRP +P D    ++IT RFP VHGAPV +GDP A+GI++L+ P FG++V + AGE PVFWACG TPQ+  M  AP + V H+PG MFV DV +E LA
Sbjct:    9 SASDVRLACRRRELTGQTSGLAPGFAQANLVILPQSDAGEFLLFCQRNPKPCPLLEVTDVGSPVPKRFAPDGDLRTDLPRYRVWEQGKLIEEPNDITHRWRDD---FVSFLIGCSFTFETPLRAAGIPVRHIDEGRNVPMYRTNMSCEPAGKFRGELVVSMRPLKPADAIRAIQITSRFPGVHGAPVHFGDPAAIGIENLSRPDFGESVTIHAGEAPVFWACGVTPQVALMNAAPEIAVTHSPGCMFVTDVRDEDLA 262
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: UPI001BEDA586 (putative hydro-lyase n=1 Tax=Gelria sp. Kuro-4 TaxID=2796927 RepID=UPI001BEDA586)

HSP 1 Score: 291 bits (746), Expect = 4.850e-96
Identity = 146/254 (57.48%), Postives = 176/254 (69.29%), Query Frame = 1 
Query:   37 QFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            + R A R GE T P+   APG AQANL+ILP + A DF  FC  NPKPCP+L+V   G P  ++ A GAD+RTDLP+YRV+ HG LT EVTDI   W D+   LV FLLGCSF+F+ AL  AG+P RH+ EG NVPM+ TN +C  AG F G +VVSMRP  PE V   V++T R+P VHGAPV  GDP  +GI D+  P FGDAV ++ GEVPVFWACG TPQ VAM+  P   + HAPGHMF+ D+ NE LA
Sbjct:   10 ELRAAIRRGEYTQPTPGLAPGYAQANLVILPQKYAFDFLLFCMRNPKPCPVLDVTEVGSPVPRLAAPGADLRTDLPRYRVWEHGVLTAEVTDITACWRDD---LVAFLLGCSFTFEAALLTAGIPVRHIEEGRNVPMFITNRECTPAGVFHGPMVVSMRPIPPEQVVRAVQVTSRYPAVHGAPVHIGDPAVIGIRDVMQPDFGDAVTIKPGEVPVFWACGVTPQAVAMEAKPDFMITHAPGHMFITDLKNEELA 260
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A7C2EJ51_9BACT (Putative hydro-lyase n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C2EJ51_9BACT)

HSP 1 Score: 290 bits (741), Expect = 3.290e-95
Identity = 151/265 (56.98%), Postives = 182/265 (68.68%), Query Frame = 1 
Query:    7 PHLTMAATAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLW-PDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            P +   AT +Q R   R G+   P+   APG  Q NL+ILP E+A DF  F Q NPKPCP++EV   G P  K+ A GAD+RTDLPKYR+YR GKL  EV D++ +W PD    LV FLLGCSF+F+  L +AG+P RH+ EG NV M+ T++ C  AGAF G LVV+MRP     V+  V+I+ RFP VHGAPV  GDP ALGI DLA P FGDAV +R GEVPVFWACG TPQ VA+Q  PPL + HAPGHMFV D+ +E LA
Sbjct:    5 PEIFRQATPSQVRAMVRDGKWRKPTAGLAPGHVQVNLVILPRELAYDFLLFAQRNPKPCPVIEVTDTGSPEPKLTAPGADLRTDLPKYRIYRDGKLDREVADLRDVWTPD----LVAFLLGCSFTFEAGLLQAGIPVRHIEEGKNVSMFVTSIPCTPAGAFHGPLVVTMRPIPAPMVSRAVQISGRFPAVHGAPVHVGDPAALGIRDLAKPDFGDAVTIRPGEVPVFWACGVTPQAVAVQAKPPLMITHAPGHMFVTDLRDETLA 265
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A1W0A2C6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2C6_9STRA)

HSP 1 Score: 289 bits (740), Expect = 3.330e-95
Identity = 150/257 (58.37%), Postives = 172/257 (66.93%), Query Frame = 1 
Query:   28 TAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREGPYT-KVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            T  +FR  CR G+    S   APG AQANL+ILP E A DF  FCQ NPKPCPLLEV   G    K  A G+DIRTDLPKYR+Y  G LT EVTDIK  W D+    V FLLGCSFSF+DAL  AGL  RHL E  NVPMYRTN+ C  AG F G LVVSMRPY+P D  +   IT R+P VHG+PV  G P  +GI+++ AP +GDAV +   EVPVFWACG TPQ V +   P   + HAPGHMFV D+ NE+LA
Sbjct:    2 TPKEFREVCRSGDFDSNSAGYAPGYAQANLVILPKEHAYDFLLFCQRNPKPCPLLEVSDVGNIEMKRTAPGSDIRTDLPKYRIYEDGVLTAEVTDIKEYWKDD---FVTFLLGCSFSFEDALENAGLAVRHLQEKRNVPMYRTNIPCDSAGVFSGNLVVSMRPYKPRDAIKAAMITGRYPNVHGSPVHIGSPCDIGINNINAPDYGDAVTIHPDEVPVFWACGVTPQAVLLASKPAFAITHAPGHMFVTDLVNESLA 255
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A2E2C670_9PLAN (DUF1445 domain-containing protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C670_9PLAN)

HSP 1 Score: 290 bits (741), Expect = 4.150e-95
Identity = 146/257 (56.81%), Postives = 178/257 (69.26%), Query Frame = 1 
Query:   28 TAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            T A  R ACR GE TG +   APG AQANL+ILP   A  F+EFC+ NPKPCPLLEV   G P  ++LA  AD+RTDLP+YRV+R G+L +E TDI  LW    N  V FL+GCSF+F++AL  AGL  RH+ +G+NVPMYRT + C  AG F G LVVSMRP++P D    V+IT RFP VHGAPV  G P  LGI DL+ P +GDAV ++  E+PVFWACG TPQ V MQ  P   + H+PG MFV+D+ +E LA
Sbjct:   10 TGALVRQACRNGEFTGQTSGLAPGFAQANLVILPQTEALQFQEFCEKNPKPCPLLEVTVPGDPCPQILAKSADLRTDLPRYRVWRRGELVDEPTDITSLW---QNDFVAFLIGCSFTFEEALIAAGLSVRHIDQGVNVPMYRTTIPCESAGMFSGPLVVSMRPFKPADAIRAVQITSRFPAVHGAPVHLGFPEQLGITDLSTPDYGDAVSVKPDELPVFWACGVTPQAVLMQARPEFAITHSPGCMFVSDLKDEELA 263
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A497ASR5_9CHLR (Putative hydro-lyase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497ASR5_9CHLR)

HSP 1 Score: 289 bits (739), Expect = 4.730e-95
Identity = 142/254 (55.91%), Postives = 181/254 (71.26%), Query Frame = 1 
Query:   37 QFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            + R   R GE TGP+   APG AQANL++LP E A +F  FCQ NPKPCP+L+V   G P+   +A  AD+RTD+PKYR+YR+G+L  EVT+I   W D+   LV FL+GCSF+F+ AL  AG+P RH+ EG NVPMY TN++C  AG FRG +VVSMRP   E V + V IT R+P+VHGAP+  GDP A+GI+++  P FGDAV ++ GE PVFWACG TPQ+VA +  P L + H+PGHMF+ DV NE LA
Sbjct:    5 EIREKIRRGEWTGPTPGLAPGYAQANLVVLPKEWAFEFLLFCQRNPKPCPVLDVTEVGSPHPARVAPDADLRTDIPKYRIYRYGQLEAEVTEITDYWRDD---LVAFLIGCSFTFEAALMAAGIPVRHIEEGRNVPMYITNIECVPAGPFRGPMVVSMRPIPYEKVPKAVTITARYPKVHGAPIHIGDPSAIGIEEINEPDFGDAVTIKPGEAPVFWACGVTPQVVAREAKPELMITHSPGHMFITDVRNEELA 255
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BLAST of jgi.p|Trimin1|168875 vs. uniprot
Match: A0A1I7L0V7_9BACL (Putative hydro-lyase SAMN05421543_12233 n=2 Tax=Alicyclobacillus macrosporangiidus TaxID=392015 RepID=A0A1I7L0V7_9BACL)

HSP 1 Score: 289 bits (739), Expect = 5.590e-95
Identity = 147/257 (57.20%), Postives = 174/257 (67.70%), Query Frame = 1 
Query:   28 TAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDFEEFCQLNPKPCPLLEVLREG-PYTKVLADGADIRTDLPKYRVYRHGKLTEEVTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYRTNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDPRALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHAPGHMFVADVTNEALA 795
            T AQ R   R GE TGP+  AA G  QANL+ILP E+A +F  FCQ NPKPCP+L+V   G P    +A  AD+RTD+PKYRVYR G+L +E TDI+  W D+   LV FLLGCSF+F+ AL   G+P RH+ E  NVPMYRTN+ C  AG F G +VVSMRP     V   V++T RFP VHGAPV  GDP A+GI+DL+ P FGD V    GEVPVFWACG TPQ VAM   P L + HAPGHMF+ DV +E  A
Sbjct:    7 TPAQMREKIRRGEWTGPTAGAAAGYTQANLVILPKELAFEFLLFCQRNPKPCPVLDVTEVGSPVPARVAPDADLRTDVPKYRVYRSGELVDETTDIQSYWSDH---LVAFLLGCSFTFEQALLDNGVPVRHIEENCNVPMYRTNIDCTPAGRFSGPMVVSMRPIPHAQVVRAVQVTSRFPAVHGAPVHIGDPAAIGIEDLSKPDFGDPVTFHPGEVPVFWACGVTPQAVAMHVKPELMITHAPGHMFITDVRDEQFA 260
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168875 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRT9_9STRA5.600e-201100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CQC8_SAPPC9.060e-9859.53Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZKG3_9STRA4.340e-9758.69Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7W0MDY9_9PLAN4.490e-9757.59Putative hydro-lyase n=1 Tax=Planctomycetaceae bac... [more]
UPI001BEDA5864.850e-9657.48putative hydro-lyase n=1 Tax=Gelria sp. Kuro-4 Tax... [more]
A0A7C2EJ51_9BACT3.290e-9556.98Putative hydro-lyase n=1 Tax=candidate division NC... [more]
A0A1W0A2C6_9STRA3.330e-9558.37Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2E2C670_9PLAN4.150e-9556.81DUF1445 domain-containing protein n=3 Tax=Planctom... [more]
A0A497ASR5_9CHLR4.730e-9555.91Putative hydro-lyase n=1 Tax=Chloroflexi bacterium... [more]
A0A1I7L0V7_9BACL5.590e-9557.20Putative hydro-lyase SAMN05421543_12233 n=2 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:685195..686630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168875|e_gw1.60.55.1
Preferred nameycsI
DescriptionBelongs to the D-glutamate cyclase family
COG categoryS
Max annot lvl91061|Bacilli
EggNOG OGsCOG4336@1|root,COG4336@2|Bacteria,1TRY8@1239|Firmicutes,4HCWD@91061|Bacilli
Evalue5.96e-99
Seed ortholog1382304.JNIL01000001_gene2102
Hectar predicted targeting categoryother localisation
TranscriptId169197
TrackFilteredModels1
ProteinId168875
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168875gene_6846Tribonema minus UTEX_B_3156 geneContig_60 685195..686630 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6846_1exon_6846_1Tribonema minus UTEX_B_3156 exonContig_60 685195..685302 +
exon_6846_2exon_6846_2Tribonema minus UTEX_B_3156 exonContig_60 685450..685611 +
exon_6846_3exon_6846_3Tribonema minus UTEX_B_3156 exonContig_60 685774..686060 +
exon_6846_4exon_6846_4Tribonema minus UTEX_B_3156 exonContig_60 686378..686630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6846CDS_6846Tribonema minus UTEX_B_3156 CDSContig_60 685195..685302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168875Trimin1|168875|e_gw1.60.55.1Tribonema minus UTEX_B_3156 polypeptideContig_60 685195..686630 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6846 ID=mRNA_6846|Name=jgi.p|Trimin1|168875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_60:685195..686630+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCTCACTTGACAATGGCAGCAACGGCAGCGCAATTTCGGCTCGC
TTGTCGGTGTGGTGAAGTGACCGGCCCCTCCTGCGCAGCAGCGCCAGGGT
CTGCTCAGGCAAACCTTATCATTTTGCCATGCGAAATGGCAGATGATTTC
GAAGAGTTCTGTCAACTCAATCCGAAGCCCTGTCCGCTGCTGGAGGTGCT
GAGAGAAGGCCCGTACACCAAGGTGCTGGCAGACGGCGCGGACATCAGGA
CGGACCTGCCAAAGTACAGGGTGTACCGCCACGGCAAACTGACGGAGGAG
GTGACGGACATCAAGCACCTGTGGCCGGACAACAGCAACTGCCTTGTGGG
CTTTTTGCTGGGCTGCAGCTTCAGCTTCGATGACGCGCTCGCCAAGGCCG
GCCTGCCGCCGCGCCACCTCACGGAGGGTCTCAATGTGCCCATGTACCGC
ACCAACGTCAAGTGCGCGGAGGCGGGGGCGTTCAGGGGGGAGCTGGTGGT
GTCGATGCGCCCGTACCGGCCGGAGGACGTTGCGGAGGTCGTCCGGATAA
CCGAACGCTTCCCGCGCGTGCACGGCGCGCCCGTCGCGTGGGGCGACCCC
CGCGCGCTCGGCATCGACGACCTCGCCGCGCCGCTGTTCGGCGACGCCGT
GCCGCTGCGCGCGGGCGAGGTGCCCGTGTTCTGGGCGTGCGGCGCGACGC
CGCAGCTCGTCGCCATGCAGTGCGCGCCGCCGCTGTGCGTCGCGCACGCG
CCGGGGCACATGTTCGTCGCGGACGTGACCAACGAGGCGCTGGCGGGGCC
CGGGGGGTGA
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protein sequence of jgi.p|Trimin1|168875

>Trimin1|168875|e_gw1.60.55.1 ID=Trimin1|168875|e_gw1.60.55.1|Name=jgi.p|Trimin1|168875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MVPHLTMAATAAQFRLACRCGEVTGPSCAAAPGSAQANLIILPCEMADDF
EEFCQLNPKPCPLLEVLREGPYTKVLADGADIRTDLPKYRVYRHGKLTEE
VTDIKHLWPDNSNCLVGFLLGCSFSFDDALAKAGLPPRHLTEGLNVPMYR
TNVKCAEAGAFRGELVVSMRPYRPEDVAEVVRITERFPRVHGAPVAWGDP
RALGIDDLAAPLFGDAVPLRAGEVPVFWACGATPQLVAMQCAPPLCVAHA
PGHMFVADVTNEALAGPGG*
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mRNA from alignment at Contig_60:685195..686630+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6846 ID=mRNA_6846|Name=jgi.p|Trimin1|168875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1436bp|location=Sequence derived from alignment at Contig_60:685195..686630+ (Tribonema minus UTEX_B_3156 )
ATGGTGCCTCACTTGACAATGGCAGCAACGGCAGCGCAATTTCGGCTCGC
TTGTCGGTGTGGTGAAGTGACCGGCCCCTCCTGCGCAGCAGCGCCAGGGT
CTGCTCAGGTGCAACAAGTTTTAGCCTTCGAAAACGTGACAGTAGTGCCA
CCAACGAGCGTGCATGCGATATGCGACAACGACCTTGCATGACTGGCGCC
AGCATGATTCTTCAAGCATCTCTCGTGCCCATTTGGACCGCATTGATTGC
CGCAGGCAAACCTTATCATTTTGCCATGCGAAATGGCAGATGATTTCGAA
GAGTTCTGTCAACTCAATCCGAAGCCCTGTCCGCTGCTGGAGGTGCTGAG
AGAAGGCCCGTACACCAAGGTGCTGGCAGACGGCGCGGACATCAGGACGG
ACCTGCCAAAGTACAGGGTGAGAGTAGGGAGTCTGCTGCACTTAGTGCTT
CGCGGTTCGAGCGTGTTTATTCAACAATTACAGTTTGCTGGCAGCTGCCA
GGCTGCAACACGTGCCGCTGTTCAGTCAGCAACTGGCGCTGCTGCCTCTC
ACTCTCTCTTTCCATCTGTGCGCCTCCAGGTGTACCGCCACGGCAAACTG
ACGGAGGAGGTGACGGACATCAAGCACCTGTGGCCGGACAACAGCAACTG
CCTTGTGGGCTTTTTGCTGGGCTGCAGCTTCAGCTTCGATGACGCGCTCG
CCAAGGCCGGCCTGCCGCCGCGCCACCTCACGGAGGGTCTCAATGTGCCC
ATGTACCGCACCAACGTCAAGTGCGCGGAGGCGGGGGCGTTCAGGGGGGA
GCTGGTGGTGTCGATGCGCCCGTACCGGCCGGAGGACGTTGCGGAGGTCG
TCCGGATAACCGAACGGTGAGAGGGGGCGCGTGTGGTGGTCACCGCGTGG
CAGGCCTCGCCATCACACATCGCCGTCATCTGCGGCTAGCATGTGCTGAC
GCGCCACGCGCCATTGGCAGCGGCGGGCAGGGCCCTGATATCCCCCAACT
TATCCACACGAACAATTCGAATTGAGCTGGCACATCAGTGCTCAATAGTA
CTGTCACCACATCGTGACGTAACTGTCCACAACCTCACCTGCACCGCCTC
AGCAGGCACTCGGCACCTGTGACCTTCCCTCCGCCCTCCCCCCCCCCCCC
TCCCCCCCCCCCCCCCCGCTCACCGCTCGTCAGCTTCCCGCGCGTGCACG
GCGCGCCCGTCGCGTGGGGCGACCCCCGCGCGCTCGGCATCGACGACCTC
GCCGCGCCGCTGTTCGGCGACGCCGTGCCGCTGCGCGCGGGCGAGGTGCC
CGTGTTCTGGGCGTGCGGCGCGACGCCGCAGCTCGTCGCCATGCAGTGCG
CGCCGCCGCTGTGCGTCGCGCACGCGCCGGGGCACATGTTCGTCGCGGAC
GTGACCAACGAGGCGCTGGCGGGGCCCGGGGGGTGA
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Coding sequence (CDS) from alignment at Contig_60:685195..686630+

>mRNA_6846 ID=mRNA_6846|Name=jgi.p|Trimin1|168875|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_60:685195..686630+ (Tribonema minus UTEX_B_3156 )
ATGGTGCCTCACTTGACAATGGCAGCAACGGCAGCGCAATTTCGGCTCGC
TTGTCGGTGTGGTGAAGTGACCGGCCCCTCCTGCGCAGCAGCGCCAGGGT
CTGCTCAGGCAAACCTTATCATTTTGCCATGCGAAATGGCAGATGATTTC
GAAGAGTTCTGTCAACTCAATCCGAAGCCCTGTCCGCTGCTGGAGGTGCT
GAGAGAAGGCCCGTACACCAAGGTGCTGGCAGACGGCGCGGACATCAGGA
CGGACCTGCCAAAGTACAGGGTGTACCGCCACGGCAAACTGACGGAGGAG
GTGACGGACATCAAGCACCTGTGGCCGGACAACAGCAACTGCCTTGTGGG
CTTTTTGCTGGGCTGCAGCTTCAGCTTCGATGACGCGCTCGCCAAGGCCG
GCCTGCCGCCGCGCCACCTCACGGAGGGTCTCAATGTGCCCATGTACCGC
ACCAACGTCAAGTGCGCGGAGGCGGGGGCGTTCAGGGGGGAGCTGGTGGT
GTCGATGCGCCCGTACCGGCCGGAGGACGTTGCGGAGGTCGTCCGGATAA
CCGAACGCTTCCCGCGCGTGCACGGCGCGCCCGTCGCGTGGGGCGACCCC
CGCGCGCTCGGCATCGACGACCTCGCCGCGCCGCTGTTCGGCGACGCCGT
GCCGCTGCGCGCGGGCGAGGTGCCCGTGTTCTGGGCGTGCGGCGCGACGC
CGCAGCTCGTCGCCATGCAGTGCGCGCCGCCGCTGTGCGTCGCGCACGCG
CCGGGGCACATGTTCGTCGCGGACGTGACCAACGAGGCGCTGGCGGGGCC
CGGGGGGTGA
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