mRNA_6739 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168733
Unique NamemRNA_6739
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|168733 vs. uniprot
Match: A0A835YRK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK6_9STRA)

HSP 1 Score: 477 bits (1227), Expect = 5.100e-170
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 
Query:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINLALKQARKEGGRGSVTEMTAEEAAAVANLQQEAGDVQGGAAAGGYDYTNMTYPDQGGAQQRSPVSSPGSLMMSSPDQSPDHAARGSQRNYGNR 726
            MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINLALKQARKEGGRGSVTEMTAEEAAAVANLQQEAGDVQGGAAAGGYDYTNMTYPDQGGAQQRSPVSSPGSLMMSSPDQSPDHAARGSQRNYGNR
Sbjct:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINLALKQARKEGGRGSVTEMTAEEAAAVANLQQEAGDVQGGAAAGGYDYTNMTYPDQGGAQQRSPVSSPGSLMMSSPDQSPDHAARGSQRNYGNR 242
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BLAST of jgi.p|Trimin1|168733 vs. uniprot
Match: D7FSB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.320e-44
Identity = 83/165 (50.30%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINLALKQARKE--GGRGS 489
            M  G N+F+R+ K  L W PE  ER+AW+QVF S+LTQ    A+FPSYNVVLG WGLY  +T+S Q+   YL  L  SILLDII+CS+WGSN A +FDG TA FCLVMLI NM  K  ++  F + +K    E+   A+RP  R   +    KQ  ++  GGRG+
Sbjct:    1 MPVGENNFDRLAKSALRWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGLWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGSNDAGIFDGSTASFCLVMLILNMLAKLAAVYCFLRFYK----EMESGAIRPQER---LGAPAKQGGRQSAGGRGA 158
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BLAST of jgi.p|Trimin1|168733 vs. uniprot
Match: A0A7S1XR43_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR43_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.730e-13
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:   49 TWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFD----GPTAIFCLVMLIFNMGVK 348
            TW    +E+    Q+ LS LTQ+ GE SFPSYN++LGFW  Y A+T++ +    ++     SI+LDI + + WG+ +   F+      ++ F L M++FN+  K
Sbjct:    9 TWSRR-LEKCGLGQLVLSFLTQVSGEISFPSYNILLGFWCCYCAWTKNVRGIFAFVCLTLLSIILDIAFMATWGTGEENYFETGDNASSSQFALAMMVFNLFAK 111
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BLAST of jgi.p|Trimin1|168733 vs. uniprot
Match: A0A7S1U2V5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2V5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.010e-10
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  112 QLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFD----GPTAIFCLVMLIFNMGVK 348
            Q+ GE SFPSYN++LGFW  Y A+T++ +    ++     SI+LDI + + WG+ +   F+      ++ F L M++FN+  K
Sbjct:   44 QVSGEISFPSYNILLGFWCCYCAWTKNVRGIFAFVCLTLLSIILDIAFMATWGTGEENYFETGDNASSSQFALAMMVFNLFAK 126
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168733 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YRK6_9STRA5.100e-170100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSB1_ECTSI4.320e-4450.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XR43_9STRA2.730e-1336.54Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U2V5_9STRA9.010e-1036.14Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_60contigContig_60:51096..52614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168733|e_gw1.60.201.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004850.1
TranscriptId169055
TrackFilteredModels1
ProteinId168733
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168733gene_6739Tribonema minus UTEX_B_3156 geneContig_60 51096..52614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6739_1exon_6739_1Tribonema minus UTEX_B_3156 exonContig_60 51096..51363 +
exon_6739_2exon_6739_2Tribonema minus UTEX_B_3156 exonContig_60 52154..52614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6739CDS_6739Tribonema minus UTEX_B_3156 CDSContig_60 51096..51363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168733Trimin1|168733|e_gw1.60.201.1Tribonema minus UTEX_B_3156 polypeptideContig_60 51096..52614 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6739 ID=mRNA_6739|Name=jgi.p|Trimin1|168733|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=729bp|location=Sequence derived from alignment at Contig_60:51096..52614+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCAGGCGTCAATCACTTCAATCGAATACGCAAGGAGTTGCTGAC
CTGGCATCCGGAGTACGTGGAGCGGTCCGCGTGGATTCAGGTGTTTTTGA
GCATCCTCACACAGCTGGGAGGCGAGGCGAGCTTTCCCTCGTACAATGTG
GTGTTGGGATTTTGGGGCTTGTACGTGGCATTCACCAGGAGCTTCCAGGC
TTGCAACTGCTACCTGTGGTTTCTAGCGGCTTCGATACTGCTGGACATCA
TCTATTGTAGCGTCTGGGGTTCTAACAAGGCCAAAGTCTTTGACGGCCCC
ACCGCCATATTCTGCCTGGTGATGCTCATCTTCAACATGGGCGTCAAAGC
TGTATCACTACTTTACTTCAAGCAGCTGCACAAAACGCTGGTAGCAGAGC
TCACGGACCGTGCCTTGAGGCCGGCCAATAGGCGTGCGAGCATTAACCTT
GCGCTCAAGCAGGCGCGGAAAGAGGGGGGGCGGGGCAGCGTGACGGAGAT
GACGGCAGAGGAAGCTGCTGCAGTTGCAAATTTGCAGCAAGAAGCTGGTG
ATGTACAAGGGGGAGCAGCTGCGGGGGGCTATGACTACACCAACATGACA
TATCCGGATCAGGGGGGGGCGCAGCAGCGATCACCTGTCAGCAGCCCTGG
TTCGCTCATGATGAGCAGTCCTGACCAAAGTCCAGACCATGCGGCCAGGG
GCAGTCAGAGGAACTACGGCAACCGATGA
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protein sequence of jgi.p|Trimin1|168733

>Trimin1|168733|e_gw1.60.201.1 ID=Trimin1|168733|e_gw1.60.201.1|Name=jgi.p|Trimin1|168733|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNV
VLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGP
TAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINL
ALKQARKEGGRGSVTEMTAEEAAAVANLQQEAGDVQGGAAAGGYDYTNMT
YPDQGGAQQRSPVSSPGSLMMSSPDQSPDHAARGSQRNYGNR*
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mRNA from alignment at Contig_60:51096..52614+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6739 ID=mRNA_6739|Name=jgi.p|Trimin1|168733|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1519bp|location=Sequence derived from alignment at Contig_60:51096..52614+ (Tribonema minus UTEX_B_3156 )
ATGGCCCCAGGCGTCAATCACTTCAATCGAATACGCAAGGAGTTGCTGAC
CTGGCATCCGGAGTACGTGGAGCGGTCCGCGTGGATTCAGGTGTTTTTGA
GCATCCTCACACAGCTGGGAGGCGAGGCGAGCTTTCCCTCGTACAATGTG
GTGTTGGGATTTTGGGGCTTGTACGTGGCATTCACCAGGAGCTTCCAGGC
TTGCAACTGCTACCTGTGGTTTCTAGCGGCTTCGATACTGCTGGACATCA
TCTATTGTAGCGTCTGGGGTGAGTCTCGCGGTCTCCAGCACGTGTAGTAG
TATATGACGCGACATCTGAGCTGGCGCTGACCATCGCTTGCCAAGTGGGT
CAAAATTTGTTTGTGCTGACCATCGGTTGCCATGTAGGTCAAGGTCTATC
CGTAGGTTGGTCATACATACAGTGTTGCGGTGGCGACGCGCCTTCATCCG
CTACAGCACTTATCGATCCTTTCCGCCACCCGGGGTCGTTGTATTGAGTG
TCTTGCCAGAAGGTACCACATAACAAAACCACGCACCGAAACATTTTCAA
AGCAGTCCTTCGTGATCATCTGCAGTTGGTAAACACGTGACCCAAACACA
TATGACATCAGCGACAAGCTGGTACACAGCGGTCGGCAGCCCGTGCAGAT
CGAGTGGTTCACATGGTTTTGTTTGTAAAAATCATGAGTGGCGCATGATT
ATGAATTCAGCTGTTCTGCCACACACGTGTTGTGGGTCCAGCCTCAGCCA
CCGTCAAATTCTTGGGAGCGCCGGTGCAAATGACCATCTGTCATCTGATG
GTTGCGATGGACTAATTGGGTTTCTGTTGGTATGTGAATCACGTAGCAGC
TTATGTAAGGAAAGAGAACCAATTGCACTGAATACTAGTGGTTCCATGCC
AAAGTAGCCAAATGCCTCGCAAGGAATGCTCCAGCTTGCCGTGCGGCAGG
TGTCTCAAAGGTTTCAGTCAAAAATCCAGTCACACATCTTCAAACACTGA
TGTGTGCGCTGCACTACGTCACTTGGACGCACTGCTTCACGTCTTTGCTC
CAACGCAGGTTCTAACAAGGCCAAAGTCTTTGACGGCCCCACCGCCATAT
TCTGCCTGGTGATGCTCATCTTCAACATGGGCGTCAAAGCTGTATCACTA
CTTTACTTCAAGCAGCTGCACAAAACGCTGGTAGCAGAGCTCACGGACCG
TGCCTTGAGGCCGGCCAATAGGCGTGCGAGCATTAACCTTGCGCTCAAGC
AGGCGCGGAAAGAGGGGGGGCGGGGCAGCGTGACGGAGATGACGGCAGAG
GAAGCTGCTGCAGTTGCAAATTTGCAGCAAGAAGCTGGTGATGTACAAGG
GGGAGCAGCTGCGGGGGGCTATGACTACACCAACATGACATATCCGGATC
AGGGGGGGGCGCAGCAGCGATCACCTGTCAGCAGCCCTGGTTCGCTCATG
ATGAGCAGTCCTGACCAAAGTCCAGACCATGCGGCCAGGGGCAGTCAGAG
GAACTACGGCAACCGATGA
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Coding sequence (CDS) from alignment at Contig_60:51096..52614+

>mRNA_6739 ID=mRNA_6739|Name=jgi.p|Trimin1|168733|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_60:51096..52614+ (Tribonema minus UTEX_B_3156 )
ATGGCCCCAGGCGTCAATCACTTCAATCGAATACGCAAGGAGTTGCTGAC
CTGGCATCCGGAGTACGTGGAGCGGTCCGCGTGGATTCAGGTGTTTTTGA
GCATCCTCACACAGCTGGGAGGCGAGGCGAGCTTTCCCTCGTACAATGTG
GTGTTGGGATTTTGGGGCTTGTACGTGGCATTCACCAGGAGCTTCCAGGC
TTGCAACTGCTACCTGTGGTTTCTAGCGGCTTCGATACTGCTGGACATCA
TCTATTGTAGCGTCTGGGGTTCTAACAAGGCCAAAGTCTTTGACGGCCCC
ACCGCCATATTCTGCCTGGTGATGCTCATCTTCAACATGGGCGTCAAAGC
TGTATCACTACTTTACTTCAAGCAGCTGCACAAAACGCTGGTAGCAGAGC
TCACGGACCGTGCCTTGAGGCCGGCCAATAGGCGTGCGAGCATTAACCTT
GCGCTCAAGCAGGCGCGGAAAGAGGGGGGGCGGGGCAGCGTGACGGAGAT
GACGGCAGAGGAAGCTGCTGCAGTTGCAAATTTGCAGCAAGAAGCTGGTG
ATGTACAAGGGGGAGCAGCTGCGGGGGGCTATGACTACACCAACATGACA
TATCCGGATCAGGGGGGGGCGCAGCAGCGATCACCTGTCAGCAGCCCTGG
TTCGCTCATGATGAGCAGTCCTGACCAAAGTCCAGACCATGCGGCCAGGG
GCAGTCAGAGGAACTACGGCAACCGATGA
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