mRNA_6812 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A835YN08_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN08_9STRA) HSP 1 Score: 203 bits (517), Expect = 3.610e-66 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query: 1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP
Sbjct: 1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 108
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA) HSP 1 Score: 135 bits (339), Expect = 4.300e-36 Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = 1
Query: 10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
TLELLQS +N PL ++A+E +SLT++K++CRK GIQRWPHRQIRS++K EL ERI+ TS E + LQ Q+ LLEKK+RLVTRGASSGLQSALRNALF+A+P
Sbjct: 15 TLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANP 119
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA) HSP 1 Score: 132 bits (331), Expect = 5.200e-35 Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
TLELLQS +N PL ++A+E +SLT++K++CRK GIQRWPHRQIRSL+K EL+ER +A E + ++ Q+ LLEKK+RLVTRGASSGLQSALRNALF+A+P
Sbjct: 12 TLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANP 116
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI) HSP 1 Score: 130 bits (326), Expect = 2.400e-34 Identity = 64/108 (59.26%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
+E TLELLQS +N PL ++A+E +SLT++K++CRK GIQRWPHRQIRS++K + +L ERI++ S E + L+ Q+ LLEKKRRLVT+GASSGL +A+RNA+F+A+P
Sbjct: 12 EEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANP 119
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 5.860e-21 Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 324
TL +L++ + PL AR VS TM+K+LCR+ GIQRWPHRQIRS++K + + + + TSA +++ E++ALL+KKR +V + AS GL ++LR+A+FMA P
Sbjct: 101 TLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARP 205
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A6H5JS66_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS66_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 7.330e-20 Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMAD 321
T+E+LQ F+ PLV VA E VSLTM+KRLCRKLG+ RWP RQI S++K + +L +++ + + + + + EKK++L+TRGA++G+ +RNAL++AD
Sbjct: 32 TIEVLQQHFHQPLVVVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQLEGARTEADRARYCKALEDAEKKKQLITRGAAAGVDPNVRNALYLAD 135
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: D8LTZ5_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ5_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.350e-19 Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 10 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMAD 321
T+E+LQ F+ PL+ VA E VSLTM+KRLCRKLG+ RWP RQI S++K + +L +++ + + + + + EKK++L+TRGA++G+ +RNAL++AD
Sbjct: 32 TIEVLQQHFHQPLMAVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQLEGARTEADRARYCKALEDAEKKKQLITRGAAAGVDPNVRNALYLAD 135
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A7S3UTA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA5_HETAK) HSP 1 Score: 83.6 bits (205), Expect = 1.390e-16 Identity = 42/104 (40.38%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 13 LELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELE-ERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMAD 321
++LL+++F+ PL + A +S+T +K++CRK I+RWPHRQ+RSL+ + ELE ++ + +++ L ++ LLEKKR +V + AS GL+ RNA+F A+
Sbjct: 31 IDLLENKFDLPLSEAASSLGLSMTKLKKICRKFNIKRWPHRQVRSLENEIEELEMKKRRPNVTCAKIAKLNRRIELLEKKRLIVVKAASFGLEPKERNAIFCAN 134
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: A0A425CIF9_9STRA (RWP-RK domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CIF9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.620e-16 Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLV 261
+E TLE L+ F+ P+V+VAREF + T +K++CR+ GI+RWPHRQIRSL++ + LE+ SATT+ E + + Q+ L+ K+R V
Sbjct: 86 RELTLEKLRPHFDRPIVEVAREFGICTTFLKKICRRCGIKRWPHRQIRSLNRTIQMLEQVESATTNPEEKARYKTQIEELKDKQRAV 172
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Match: M4BJE9_HYAAE (RWP-RK domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJE9_HYAAE) HSP 1 Score: 80.1 bits (196), Expect = 1.410e-15 Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLV 261
+E TLE L+ F P+V+VAREF + T +K+LCR+ GI+RWPHRQIRSL++ + LE+ SATTS E + Q+ L+ K+R V
Sbjct: 83 RELTLEELRPHFGQPIVEVAREFGICTTFLKKLCRQCGIKRWPHRQIRSLNRTIQMLEQVESATTSPEEKATYAAQIKELKDKQRAV 169 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141136 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6812 ID=mRNA_6812|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_60:474261..474584+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGGAGCCCACGCTGGAGCTGCTGCAGTCACGCTTCAATACCCCTTTGGTback to top protein sequence of jgi.p|Trimin1|141136 >Trimin1|141136|gw1.60.119.1 ID=Trimin1|141136|gw1.60.119.1|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLback to top mRNA from alignment at Contig_60:474261..474584+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_60:474261..474584+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_60:474261..474584+ >mRNA_6812 ID=mRNA_6812|Name=jgi.p|Trimin1|141136|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_60:474261..474584+ (Tribonema minus UTEX_B_3156 )back to top |