mRNA_2201 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA) HSP 1 Score: 248 bits (633), Expect = 1.010e-83 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE
Sbjct: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.140e-43 Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
MLFCPT G+LLMVE+ +G RF CQTCPY+HP+ K+T+ + L++K VDD++GG DAW NVDK C C + KEA+F QLRSADEPMT FYKC +C RW E
Sbjct: 1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNN----KEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A397H395_9GLOM (DNA-directed RNA polymerase subunit n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397H395_9GLOM) HSP 1 Score: 141 bits (355), Expect = 2.640e-41 Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQ--GGKVTKALT-LQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCV--DCGFRWNE 336
MLFCP CGN+L++++ T+G Q F CQTCPYV P+G G ++ K T L+RKEVDDVLGG +AW NVD C C+ P AYF Q Q RSADEPM++FYKC DCGF+WNE
Sbjct: 1 MLFCPCCGNILLIKSHTQGEQSFYCQTCPYVFPIGCRIGQQIYKNRTILKRKEVDDVLGGEEAWKNVDSTDARCPKCEHP----RAYFMQIQTRSADEPMSIFYKCCNHDCGFQWNE 113
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: U9UHV3_RHIID (DNA-directed RNA polymerase subunit n=8 Tax=Eukaryota TaxID=2759 RepID=U9UHV3_RHIID) HSP 1 Score: 136 bits (342), Expect = 2.220e-39 Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCV--DCGFRWNE 336
MLFCP CGNLL+++ T+G Q F CQTCPYV P+G + TL+RKEVDDVLGG + W NVD V C C+ P AYF Q Q RSADEPM++FYKC +C +WNE
Sbjct: 1 MLFCPCCGNLLLIQHHTQGEQSFFCQTCPYVFPIGSK-EYKNRTTLKRKEVDDVLGGEEGWKNVDSTEVTCPKCEHP----RAYFMQIQTRSADEPMSIFYKCCNHECQHQWNE 109
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A397VYQ6_9GLOM (DNA-directed RNA polymerase subunit n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VYQ6_9GLOM) HSP 1 Score: 135 bits (341), Expect = 3.560e-39 Identity = 64/117 (54.70%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLG-QGGK--VTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCV--DCGFRWNE 336
MLFCP CGNLL+++ +G Q F CQTCPY+ P+G +GGK TL+RKEVDDVLGG + W NVD C C+ P AYF Q Q RSADEPM++FYKC DC +WNE
Sbjct: 1 MLFCPCCGNLLLIKTLMQGEQAFYCQTCPYIFPIGGRGGKSLYKNRTTLKRKEVDDVLGGEEGWKNVDSTEARCPKCEHP----RAYFMQIQTRSADEPMSIFYKCCNHDCQHQWNE 113
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO) HSP 1 Score: 135 bits (339), Expect = 8.360e-39 Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
MLFCPTCGN+L++E G +F C TCPY+ + K+TK++TL+RK VDDVLGGA AW NVD+ C C + AYF Q Q+RSADEPMT FYKCV C RWN+
Sbjct: 16 MLFCPTCGNMLLIEGGA--GTKFFCTTCPYIQRVTT--KITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGH----RRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A7S0RJ62_9CHLO (DNA-directed RNA polymerase subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RJ62_9CHLO) HSP 1 Score: 133 bits (334), Expect = 3.350e-38 Identity = 63/112 (56.25%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
M FCPTCG LLMVE R+ACQTCPYV+ + + K+ K L+ KEVDDVLGG +AW NVD+ V+C C D G +AYF Q Q RSADEPMT+FYKC C RW +
Sbjct: 2 MTFCPTCGTLLMVEYCELTRLRYACQTCPYVYMIDR--KIVKEHVLETKEVDDVLGGDEAWANVDRTEVSCPKC-DHG---QAYFMQVQTRSADEPMTIFYKCCKCANRWKD 107
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A1Y1VKS4_9FUNG (DNA-directed RNA polymerase subunit n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VKS4_9FUNG) HSP 1 Score: 132 bits (332), Expect = 6.970e-38 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 1
Query: 7 FCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
FCP+CGN+L+++ +G Q F CQTCPYV P+ + T+ +RKEVDDVLGGA AW NVD C C++ GK A+F Q Q RSADEPMT+FYKC +CGF+W E
Sbjct: 4 FCPSCGNMLLLQLNLQGIQEFYCQTCPYVFPIIR--PQTQVTQFKRKEVDDVLGGAKAWENVDSTEATCPKCEN---GK-AFFMQIQTRSADEPMTIFYKCTECGFQWRE 107
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.670e-37 Identity = 62/112 (55.36%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
M FCPTCGNLLMVE + G RF CQTCPY++ + Q KV + LQRK+VDDVLGG +AW NVD+ C C+ +AYF Q Q+RSADEP T FYKC C +WN+
Sbjct: 1 MHFCPTCGNLLMVEPDS-DGMRFCCQTCPYIYKINQ--KVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHT----KAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE) HSP 1 Score: 130 bits (328), Expect = 2.670e-37 Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 336
MLFCPTC NLL++E T RF C+TCPYV + Q K + L+RKEVDDVLGG +AW NVD+ C C + K AYF Q Q+RSADEPMT FYKC C ++W E
Sbjct: 1 MLFCPTCANLLLIEK-THSDFRFFCKTCPYVFVVEQN--FEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNN----KRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2201 ID=mRNA_2201|Name=jgi.p|Trimin1|158516|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_6:1394563..1395977- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTCTTCTGCCCCACGTGCGGCAACCTGCTCATGGTGGAGGCGGCGACback to top protein sequence of jgi.p|Trimin1|158516 >Trimin1|158516|e_gw1.6.11.1 ID=Trimin1|158516|e_gw1.6.11.1|Name=jgi.p|Trimin1|158516|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEback to top mRNA from alignment at Contig_6:1394563..1395977- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2201 ID=mRNA_2201|Name=jgi.p|Trimin1|158516|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1415bp|location=Sequence derived from alignment at Contig_6:1394563..1395977- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:1394563..1395977- >mRNA_2201 ID=mRNA_2201|Name=jgi.p|Trimin1|158516|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_6:1394563..1395977- (Tribonema minus UTEX_B_3156 )back to top |