mRNA_2145 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154875
Unique NamemRNA_2145
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A835YNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB8_9STRA)

HSP 1 Score: 632 bits (1631), Expect = 7.240e-229
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1
Query:    1 LRIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVYTK 972
            LRIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVYTK
Sbjct:    1 LRIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVYTK 324          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836CDQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ4_9STRA)

HSP 1 Score: 556 bits (1434), Expect = 3.100e-190
Identity = 277/306 (90.52%), Postives = 292/306 (95.42%), Query Frame = 1
Query:    1 LRIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIAL 918
            LRIP++VLQVLTQYISITG+ALPLQYL FLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVI ALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACD+ L++FTGN YLHADYSL+C+DDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWR AARQREHGQQPSRL  ASSFLWSSY+GRAYYWES ECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTM+YEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQ+RWVE   E++   L+IA+
Sbjct:  583 LRIPIVVLQVLTQYISITGLALPLQYLQFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVIIALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDENLQKFTGNTYLHADYSLRCNDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRSAARQREHGQQPSRLAPASSFLWSSYKGRAYYWESVECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMMYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQSRWVEPLGERSSCRLVIAM 888          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836CGF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF3_9STRA)

HSP 1 Score: 538 bits (1387), Expect = 7.460e-190
Identity = 274/311 (88.10%), Postives = 288/311 (92.60%), Query Frame = 1
Query:   40 YISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVYTK 972
            YISITG+ LPLQYL FLRAVDFMSLDMRWLTSPGCAAD+DFYGRLLIATLAPLVITALIFSPRLYL FISRRRPAVAPKLRQ+V RDVNAFLVFTFLIFSGVSLTVFETFACDK LKEFTG+IYLHADYSL+C+DDEGLHKKYSIYAGFMVVVYPVGIPLMYAAIL   A +QREHG+QPSRL  ASSFLWSSY+GRA YWES EC RRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYE++RPHH+ MD WLYTLGCVIVV SMFTSLLMQ   V+  SEQAIGSLLIALNVLMLVMA+AQVALVYT 
Sbjct:   91 YISITGLTLPLQYLQFLRAVDFMSLDMRWLTSPGCAADVDFYGRLLIATLAPLVITALIFSPRLYLRFISRRRPAVAPKLRQVVARDVNAFLVFTFLIFSGVSLTVFETFACDKHLKEFTGDIYLHADYSLRCNDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILRLAAVKQREHGRQPSRLAPASSFLWSSYKGRACYWESVECFRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEQVRPHHNRMDKWLYTLGCVIVVSSMFTSLLMQYHPVDGGSEQAIGSLLIALNVLMLVMAIAQVALVYTN 401          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A835YTX2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX2_9STRA)

HSP 1 Score: 484 bits (1247), Expect = 1.060e-169
Identity = 250/322 (77.64%), Postives = 279/322 (86.65%), Query Frame = 1
Query:    4 RIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRR-RPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVY 966
            RIP++VLQVLTQYISITG+ALPLQYL FLRAVDFMSLDMRWLTSPGCAAD+DFYGRLL+ TLAPLVITALIFSPR YL   SRR    VAPKLR++V+RDVNAFLV TFLIFSGVSLTVFETF CD EL   TG  YL ADYSL+C D+EG H KYSIYA FM+VVYPVGIP +YA+ILWR A RQR+  Q PSRL SA+SFLW  Y+GRAYYWE+AECVRRLML+GLLVFIMPG+PGQSAVAC+FAF T MVYE++RPH + MD WLYTLG  IVV SMFTSLLMQ +WVE +SE+AIG+LLIALNVL+LVMA+ QVALVY
Sbjct:    5 RIPIVVLQVLTQYISITGLALPLQYLRFLRAVDFMSLDMRWLTSPGCAADVDFYGRLLVTTLAPLVITALIFSPRFYLWLASRRSHGTVAPKLREVVSRDVNAFLVSTFLIFSGVSLTVFETFGCD-ELN--TGKSYLRADYSLRCDDEEGTHAKYSIYAAFMIVVYPVGIPALYASILWRSAVRQRDRTQLPSRLASATSFLWRPYKGRAYYWETAECVRRLMLAGLLVFIMPGSPGQSAVACMFAFFTAMVYEQVRPHQERMDKWLYTLGYGIVVCSMFTSLLMQVQWVEGNSEKAIGNLLIALNVLLLVMALTQVALVY 323          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836CDW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW6_9STRA)

HSP 1 Score: 497 bits (1280), Expect = 4.140e-169
Identity = 262/324 (80.86%), Postives = 276/324 (85.19%), Query Frame = 1
Query:    1 LRIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVYTK 972
            LRIPV+VLQVLTQYISITG+ LPLQYL FLRAVDFMSLDMRWLTSPGCAAD+DFYGRLLIATLAPLVITALIFSPRLYL FISRRRPAVAPKLRQ+V RDVNAFLVFTFLIFSGVSLTVFETFACDK LKEFTG+IYLHADYSL+C+DDEGLHKKYSIYAGFMVVVYPVGIPLMYAAIL + A +QREHG+QPSRL  ASSFLWSSY+GRAYYWES EC RRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYE+  P                               V+  SEQAIGSLLIALNVLMLVMA+AQVALVYT 
Sbjct:  447 LRIPVVVLQVLTQYISITGLTLPLQYLQFLRAVDFMSLDMRWLTSPGCAADVDFYGRLLIATLAPLVITALIFSPRLYLRFISRRRPAVAPKLRQVVARDVNAFLVFTFLIFSGVSLTVFETFACDKHLKEFTGDIYLHADYSLRCNDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILRQAAVKQREHGRQPSRLAPASSFLWSSYKGRAYYWESVECYRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEQYHP-------------------------------VDGGSEQAIGSLLIALNVLMLVMAIAQVALVYTN 739          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A835Z053_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z053_9STRA)

HSP 1 Score: 483 bits (1242), Expect = 3.030e-159
Identity = 242/321 (75.39%), Postives = 275/321 (85.67%), Query Frame = 1
Query:    4 RIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVY 966
            RIP++VLQVLTQYISITG+ LPLQYL FLRAVDFMSLDMRWLTSPGCAADI+FYGRLLIATLAPL ITALIF+PR YL  ISRRR A+ PKLRQ+VTRDVNAFLVFTFLIFSGVSLTVF+TF CD+   +++G  YL ADYSL+C DDEGLH +YSIYA FM+VVYPVGIP++YA+ILWR A +QR+  Q PSRL SA+SFLW  Y+GRAY+WE  EC+RRLML+GLLVFIMPG PGQSAVAC+FAF+T MVYE+I PH   MD WLYTLG  I+  SMFTSLLMQ  WVE  SEQAIG+LLI LNVL+LVMA+ QV +VY
Sbjct:  756 RIPIVVLQVLTQYISITGLTLPLQYLEFLRAVDFMSLDMRWLTSPGCAADINFYGRLLIATLAPLAITALIFTPRFYLWIISRRRHAIVPKLRQVVTRDVNAFLVFTFLIFSGVSLTVFQTFGCDE--LQYSGKSYLRADYSLECGDDEGLHTRYSIYAAFMIVVYPVGIPVLYASILWRSAVKQRDRTQLPSRLASATSFLWRPYKGRAYFWEPVECLRRLMLAGLLVFIMPGKPGQSAVACLFAFLTGMVYEQIHPHQQGMDKWLYTLGYGILFTSMFTSLLMQGHWVEGGSEQAIGNLLITLNVLLLVMALVQVGIVY 1074          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836CDK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK5_9STRA)

HSP 1 Score: 481 bits (1237), Expect = 2.010e-157
Identity = 243/321 (75.70%), Postives = 272/321 (84.74%), Query Frame = 1
Query:    4 RIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVY 966
            RIP++VLQVLTQYISITG+ LPLQYL FLRAVDF SLDMRWLTSPGCAADI+FYGRLL+ TLAPL ITAL+F+PR YL  ISRRR  VAPKLRQ+V RDVNAFLVFTFLIFSGVSLT+FETF CDK   E+TG  YL ADYSL+C D +GLH KYSIYA FM+ VYPVGIP++YA+ILWR A +QR+  Q PSRL SASSFLW  Y+GRA+YWE  EC+RRLML+GLLVFIMPG PGQSAVAC+FAF+T M YE+I PH   MD WLYTLG  I+  SMFTSLLMQ  WVE  SE+AIGSLLIALNVL+LVMA+AQVALVY
Sbjct:  868 RIPIVVLQVLTQYISITGLTLPLQYLEFLRAVDFFSLDMRWLTSPGCAADINFYGRLLVTTLAPLAITALLFTPRFYLRIISRRRHVVAPKLRQVVARDVNAFLVFTFLIFSGVSLTIFETFGCDK--LEYTGKSYLRADYSLECGDAKGLHTKYSIYAAFMIAVYPVGIPVLYASILWRSAVKQRDRMQLPSRLASASSFLWRPYKGRAFYWEPLECLRRLMLAGLLVFIMPGKPGQSAVACLFAFLTGMAYEQIHPHQQGMDKWLYTLGYGILFTSMFTSLLMQVHWVEGDSEKAIGSLLIALNVLLLVMALAQVALVY 1186          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836C9Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z8_9STRA)

HSP 1 Score: 476 bits (1224), Expect = 2.330e-155
Identity = 243/321 (75.70%), Postives = 275/321 (85.67%), Query Frame = 1
Query:    4 RIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVY 966
            RIP++VLQVLTQYISITG+ LPLQYL FLRAVDFMSLDM+WLTSPGCAA+IDFYGRLLIATLAPL ITALIF+PR Y+  ISRRR AVA KLRQ+V RDVNAFLVFTFLIFSGVSLTVFETF CDK     TGN +L ADYSL+C DDEGLH KYS+YA FM+ VYPVGIP++YA+ILWR A +QR+  Q PS L SASSFLW  Y+GRA+YWE  EC+RRLML+GLLVFIMPG PGQSAVAC+FAF T +VY++IRPH  +MD WLY LG  I+  SMFTSLLMQ RWVEE S++AIGSLLIA+NVL+LVMA+AQV LVY
Sbjct:  886 RIPIVVLQVLTQYISITGLTLPLQYLEFLRAVDFMSLDMQWLTSPGCAANIDFYGRLLIATLAPLAITALIFTPRFYVWIISRRRHAVASKLRQVVARDVNAFLVFTFLIFSGVSLTVFETFGCDKL---HTGN-FLRADYSLECDDDEGLHAKYSMYAAFMIAVYPVGIPVLYASILWRSAVKQRDRTQLPSSLASASSFLWRPYKGRAFYWEPVECLRRLMLAGLLVFIMPGKPGQSAVACLFAFCTVVVYDQIRPHQQAMDKWLYMLGYGILFSSMFTSLLMQGRWVEEGSQKAIGSLLIAMNVLLLVMALAQVGLVY 1202          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836CFC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFC3_9STRA)

HSP 1 Score: 475 bits (1222), Expect = 6.290e-153
Identity = 241/321 (75.08%), Postives = 275/321 (85.67%), Query Frame = 1
Query:    4 RIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIGSLLIALNVLMLVMAVAQVALVY 966
            RIP++V+QVLTQYISITG+ LPL+YL FL AVDF+SLDMRWLTSPGC ADI+FYGRLL+A LAPLVI+ALIFSPR YL  +SRRR AVAPKL+Q+V RDVNAFLVFTFLIFSGVSLTVFETF CD ELK FTG  YL ADYS++C DDEGLH K+SIYA FM++VYPVGIP++YA+ILWR + RQ +  Q PSRL +ASSFLW  Y+GRAYYWE+ EC+RRLML+GLLVFIMPG PGQSAVAC+F F T MVYE+I PH   MD WLYTLG  I+  SMFTSLLMQ RWVE  SEQA+G+LLIALNVL+LVMA+ QVALVY
Sbjct: 1156 RIPIVVIQVLTQYISITGLTLPLKYLEFLHAVDFLSLDMRWLTSPGCVADINFYGRLLVAKLAPLVISALIFSPRFYLWIVSRRRLAVAPKLQQVVARDVNAFLVFTFLIFSGVSLTVFETFGCD-ELK-FTGKSYLRADYSIECGDDEGLHTKFSIYAAFMIMVYPVGIPVLYASILWR-SVRQCDRTQLPSRLATASSFLWRPYKGRAYYWETVECLRRLMLAGLLVFIMPGEPGQSAVACLFVFFTAMVYEQIHPHQQGMDKWLYTLGYAILFGSMFTSLLMQVRWVEGGSEQAVGNLLIALNVLLLVMALVQVALVY 1473          
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Match: A0A836CBF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF0_9STRA)

HSP 1 Score: 417 bits (1073), Expect = 2.610e-135
Identity = 205/264 (77.65%), Postives = 230/264 (87.12%), Query Frame = 1
Query:    4 RIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMD 795
            RIP++VLQVLTQYISITG+ LPLQYL FLRAVDFMSLDMRWLTSPGCAADI+FYGRLLIATLAPL+ITALIF+PR YL  ISR R AVAPKLRQ+VTRDVNAFLVFTFLIFSGVSLTVF+TF CDK   ++TG  YL  DYSL+C DDEGLH K S+YA FM+VVYPVGIP++YA+ILWR A RQR+  Q PSRL SASSFLW SY+GRAYYWE  EC+RR ML+GLLVFIMPG+P QSAVAC+FAF T MVYE++RPH + MD
Sbjct:  740 RIPIVVLQVLTQYISITGLTLPLQYLEFLRAVDFMSLDMRWLTSPGCAADINFYGRLLIATLAPLLITALIFTPRFYLWIISRERHAVAPKLRQVVTRDVNAFLVFTFLIFSGVSLTVFQTFGCDK--LKYTGKSYLRVDYSLECGDDEGLHSKISMYAAFMIVVYPVGIPVLYASILWRAAMRQRDRTQLPSRLASASSFLWRSYKGRAYYWEPVECLRRPMLAGLLVFIMPGSPAQSAVACMFAFFTAMVYEQVRPHQERMD 1001          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154875 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNB8_9STRA7.240e-229100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CDQ4_9STRA3.100e-19090.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGF3_9STRA7.460e-19088.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTX2_9STRA1.060e-16977.64Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CDW6_9STRA4.140e-16980.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z053_9STRA3.030e-15975.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDK5_9STRA2.010e-15775.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9Z8_9STRA2.330e-15575.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFC3_9STRA6.290e-15375.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBF0_9STRA2.610e-13577.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:860538..861509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154875|gw1.6.336.1
Max annot lvl2759|Eukaryota
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Evalue5.64e-55
Seed ortholog2880.D7G301
Hectar predicted targeting categorysignal peptide
TranscriptId155197
TrackFilteredModels1
ProteinId154875
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154875gene_2145Tribonema minus UTEX_B_3156 geneContig_6 860538..861509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2145_1exon_2145_1Tribonema minus UTEX_B_3156 exonContig_6 860538..861509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2145CDS_2145Tribonema minus UTEX_B_3156 CDSContig_6 860538..861509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154875Trimin1|154875|gw1.6.336.1Tribonema minus UTEX_B_3156 polypeptideContig_6 860538..861509 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2145 ID=mRNA_2145|Name=jgi.p|Trimin1|154875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=972bp|location=Sequence derived from alignment at Contig_6:860538..861509- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTCGGATACCGGTCATCGTCCTGCAAGTGCTCACTCAGTACATCAGCAT
CACCGGCATCGCTTTGCCGCTGCAATACCTCAACTTTTTGCGTGCAGTGG
ACTTCATGTCCCTGGACATGCGATGGCTGACCTCGCCGGGCTGCGCTGCG
GACATCGACTTTTATGGCCGGTTGCTCATCGCCACTTTAGCGCCCCTGGT
GATCACTGCCCTCATCTTCAGCCCCCGCCTCTACCTGTGTTTCATATCCC
GCCGTAGGCCTGCCGTCGCCCCCAAGCTTCGACAGATTGTCACCAGGGAT
GTCAACGCGTTCCTGGTGTTCACGTTCTTGATCTTTTCCGGCGTGTCGCT
CACGGTCTTCGAGACCTTCGCATGCGACAAAGAGTTGAAGGAGTTTACAG
GCAACATCTACCTGCACGCGGACTATTCGCTCCAGTGCAGCGATGATGAA
GGTTTGCACAAGAAATACTCAATCTACGCAGGTTTCATGGTAGTCGTGTA
CCCCGTAGGAATCCCGCTGATGTACGCCGCGATCCTTTGGCGAGTAGCAG
CGAGGCAGCGTGAGCACGGACAGCAGCCGTCTCGGCTCACCTCCGCGTCT
TCATTTCTGTGGAGCTCGTACGAAGGCCGTGCATATTACTGGGAGAGCGC
AGAGTGTGTGCGAAGACTGATGCTCTCAGGCCTCCTCGTCTTCATCATGC
CCGGCACCCCGGGCCAGAGCGCCGTTGCATGCATCTTCGCATTCGTCACG
ACCATGGTGTACGAGAAAATTCGCCCTCACCACGACAGCATGGACATGTG
GCTGTACACTTTAGGCTGCGTGATTGTCGTTTTCAGCATGTTCACCTCGC
TGCTAATGCAGACCCGTTGGGTAGAGGAAAGTAGCGAACAAGCCATCGGA
AGCCTGCTGATAGCGCTGAATGTGCTCATGCTGGTGATGGCTGTGGCTCA
AGTAGCTCTGGTGTACACCAAA
back to top

protein sequence of jgi.p|Trimin1|154875

>Trimin1|154875|gw1.6.336.1 ID=Trimin1|154875|gw1.6.336.1|Name=jgi.p|Trimin1|154875|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=324bp
LRIPVIVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAA
DIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRRPAVAPKLRQIVTRD
VNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDE
GLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQPSRLTSAS
SFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVT
TMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLLMQTRWVEESSEQAIG
SLLIALNVLMLVMAVAQVALVYTK
back to top

mRNA from alignment at Contig_6:860538..861509-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2145 ID=mRNA_2145|Name=jgi.p|Trimin1|154875|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=972bp|location=Sequence derived from alignment at Contig_6:860538..861509- (Tribonema minus UTEX_B_3156 )
CTTCGGATACCGGTCATCGTCCTGCAAGTGCTCACTCAGTACATCAGCAT CACCGGCATCGCTTTGCCGCTGCAATACCTCAACTTTTTGCGTGCAGTGG ACTTCATGTCCCTGGACATGCGATGGCTGACCTCGCCGGGCTGCGCTGCG GACATCGACTTTTATGGCCGGTTGCTCATCGCCACTTTAGCGCCCCTGGT GATCACTGCCCTCATCTTCAGCCCCCGCCTCTACCTGTGTTTCATATCCC GCCGTAGGCCTGCCGTCGCCCCCAAGCTTCGACAGATTGTCACCAGGGAT GTCAACGCGTTCCTGGTGTTCACGTTCTTGATCTTTTCCGGCGTGTCGCT CACGGTCTTCGAGACCTTCGCATGCGACAAAGAGTTGAAGGAGTTTACAG GCAACATCTACCTGCACGCGGACTATTCGCTCCAGTGCAGCGATGATGAA GGTTTGCACAAGAAATACTCAATCTACGCAGGTTTCATGGTAGTCGTGTA CCCCGTAGGAATCCCGCTGATGTACGCCGCGATCCTTTGGCGAGTAGCAG CGAGGCAGCGTGAGCACGGACAGCAGCCGTCTCGGCTCACCTCCGCGTCT TCATTTCTGTGGAGCTCGTACGAAGGCCGTGCATATTACTGGGAGAGCGC AGAGTGTGTGCGAAGACTGATGCTCTCAGGCCTCCTCGTCTTCATCATGC CCGGCACCCCGGGCCAGAGCGCCGTTGCATGCATCTTCGCATTCGTCACG ACCATGGTGTACGAGAAAATTCGCCCTCACCACGACAGCATGGACATGTG GCTGTACACTTTAGGCTGCGTGATTGTCGTTTTCAGCATGTTCACCTCGC TGCTAATGCAGACCCGTTGGGTAGAGGAAAGTAGCGAACAAGCCATCGGA AGCCTGCTGATAGCGCTGAATGTGCTCATGCTGGTGATGGCTGTGGCTCA AGTAGCTCTGGTGTACACCAAA
back to top

Coding sequence (CDS) from alignment at Contig_6:860538..861509-

>mRNA_2145 ID=mRNA_2145|Name=jgi.p|Trimin1|154875|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=972bp|location=Sequence derived from alignment at Contig_6:860538..861509- (Tribonema minus UTEX_B_3156 )
CTTCGGATACCGGTCATCGTCCTGCAAGTGCTCACTCAGTACATCAGCAT
CACCGGCATCGCTTTGCCGCTGCAATACCTCAACTTTTTGCGTGCAGTGG
ACTTCATGTCCCTGGACATGCGATGGCTGACCTCGCCGGGCTGCGCTGCG
GACATCGACTTTTATGGCCGGTTGCTCATCGCCACTTTAGCGCCCCTGGT
GATCACTGCCCTCATCTTCAGCCCCCGCCTCTACCTGTGTTTCATATCCC
GCCGTAGGCCTGCCGTCGCCCCCAAGCTTCGACAGATTGTCACCAGGGAT
GTCAACGCGTTCCTGGTGTTCACGTTCTTGATCTTTTCCGGCGTGTCGCT
CACGGTCTTCGAGACCTTCGCATGCGACAAAGAGTTGAAGGAGTTTACAG
GCAACATCTACCTGCACGCGGACTATTCGCTCCAGTGCAGCGATGATGAA
GGTTTGCACAAGAAATACTCAATCTACGCAGGTTTCATGGTAGTCGTGTA
CCCCGTAGGAATCCCGCTGATGTACGCCGCGATCCTTTGGCGAGTAGCAG
CGAGGCAGCGTGAGCACGGACAGCAGCCGTCTCGGCTCACCTCCGCGTCT
TCATTTCTGTGGAGCTCGTACGAAGGCCGTGCATATTACTGGGAGAGCGC
AGAGTGTGTGCGAAGACTGATGCTCTCAGGCCTCCTCGTCTTCATCATGC
CCGGCACCCCGGGCCAGAGCGCCGTTGCATGCATCTTCGCATTCGTCACG
ACCATGGTGTACGAGAAAATTCGCCCTCACCACGACAGCATGGACATGTG
GCTGTACACTTTAGGCTGCGTGATTGTCGTTTTCAGCATGTTCACCTCGC
TGCTAATGCAGACCCGTTGGGTAGAGGAAAGTAGCGAACAAGCCATCGGA
AGCCTGCTGATAGCGCTGAATGTGCTCATGCTGGTGATGGCTGTGGCTCA
AGTAGCTCTGGTGTACACCAAA
back to top