mRNA_2090 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151488
Unique NamemRNA_2090
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A836CB37_9STRA (FA_FANCE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB37_9STRA)

HSP 1 Score: 375 bits (962), Expect = 2.430e-130
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
Query:    1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS 663
            AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS
Sbjct:    1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS 221          
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: D7FQ65_ECTSI (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ65_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 9.400e-35
Identity = 102/236 (43.22%), Postives = 128/236 (54.24%), Query Frame = 1
Query:    1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLL-HGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAP-----GSAQCELLLRTARSALPP---------HAAAPLV--AAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRL 657
            A+C   VTPAL LR C  FVR  L+PRA AL+APA R LV+ V+   K RP  V++GL++PLL  GD A+  GSA                   A      G A+ E           P         +AAA     AA    RC W + TV ++T+ L +K  L D A+AAL   +EA AERA   KSLKF TL+H+LV +YGPQ  PH  VLRTA  + +TFM K+ L+ALQRL
Sbjct:    2 AICDGFVTPALSLRNCLAFVRAVLVPRARALNAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQILPKDTLEAVLVGLCGPAEDESAQTAGGWIEGPSGGSGGNGTNAAAGRRHDAAGSSSRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRL 237          
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A6H5KA87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA87_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.830e-21
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  355 LVAAACDPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRL 657
            L AA    RC W + TV ++T+ L +K  L D A+AAL   +EA AERA   KSLKF TL+H+LV +YGPQ  PH  VLRTA  + +TFM K+ L+ALQRL
Sbjct:   62 LYAAGSSLRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRL 162          
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A7R9Z4A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4A9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-7
Identity = 67/224 (29.91%), Postives = 104/224 (46.43%), Query Frame = 1
Query:   49 TEFVRGALLPRAAAL--SAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAA-AC-DP--------------RCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAV--LRTAAEKNTTFMKKSALSALQRLK 660
            T ++R  +LP  + L  S PA RTL+S  +  A++RP   V+ LL+P L        GS+              +GG   P  A C+L+ R  + A      A L+    C DP              +  W D ++ ++TS +  +  L D+ ++ L+ +++         KS+KF+TL H LV KYG Q    + V  L  +AE   TFM K+  S L++LK
Sbjct:  259 TAYLRSFVLPLLSNLNGSKPASRTLISTTSWLARERPSETVKALLIPSLCVPIDVRKGSS--------------NGG---PNKALCDLVGRVVKGAKEKEPIAELLTGLVCGDPAGVKIISGGSCSSDKMVWTDESIPIMTSCINKRATLPDATISELSRQVQLLVPNMR--KSMKFSTLFHALVTKYGNQLRKLSMVGDLTQSAEMLETFMGKTITSVLRKLK 463          
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A8K1FLS5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLS5_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 9.690e-7
Identity = 67/209 (32.06%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   52 EFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQ-AVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLD----DSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLKS 663
             F++ ALLPR  A ++   R L+  V   AK   Q A+++GL+VP+L   + +G  SA              +       + Q + L+  + S                     N+  V +  S+L +K  L     +  +  L G +E EAE     KS KFATLL TLV KYG Q   HA  L   A K T+ M K+AL A+Q+LKS
Sbjct:  299 SFLQAALLPRVLAATSVISRVLLQTVLLYAKPSYQTALIDGLIVPVL---STSGISSAQGEALTRILREKGVA-------AEQLDTLVNQSLSQ--------------STSILANEAVVLVFQSVLNLKPSLSAATIERLITVLNGSVENEAEI---LKSAKFATLLFTLVSKYGEQCAAHADDLEAVATKLTSVMAKAALRAIQKLKS 480          
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Match: A0A329T1M1_9STRA (FA_FANCE domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1M1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.670e-5
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  373 DPRCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAER--AEQCK-SLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLK 660
            DP    N+  + +  ++L  K VL    V  L G  EA  ER  AEQ + SLKFAT++ TL+ KY  Q   H   L   A + T+ M K+ L +LQ+LK
Sbjct:  411 DPHLLSNESALLVFQNILNTKPVLSALTVERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCAGHVETLEAIATQLTSIMAKTTLRSLQKLK 509          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151488 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CB37_9STRA2.430e-130100.00FA_FANCE domain-containing protein (Fragment) n=1 ... [more]
D7FQ65_ECTSI9.400e-3543.22FA_FANCE domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KA87_9PHAE1.830e-2153.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9Z4A9_9STRA1.160e-729.91Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A8K1FLS5_PYTOL9.690e-732.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329T1M1_9STRA2.670e-539.39FA_FANCE domain-containing protein n=2 Tax=Phytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:446706..447368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151488|gw1.6.288.1
BRITEko00000,ko00001,ko00002,ko03400
KEGG ModuleM00413
KEGG Pathwayko03460,map03460
KEGG koko:K10892
DescriptionFanconi Anaemia group E protein FANCE
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs28IRW@1|root,2QR36@2759|Eukaryota,37PF7@33090|Viridiplantae,3G95R@35493|Streptophyta
Evalue3.2e-12
Seed ortholog3218.PP1S13_273V6.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFanconi Anaemia group E protein, C-terminal
Ec32 orthologEc-01_007270.1
TranscriptId151810
TrackFilteredModels1
ProteinId151488
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151488gene_2090Tribonema minus UTEX_B_3156 geneContig_6 446706..447368 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2090_1exon_2090_1Tribonema minus UTEX_B_3156 exonContig_6 446706..447368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2090CDS_2090Tribonema minus UTEX_B_3156 CDSContig_6 446706..447368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151488Trimin1|151488|gw1.6.288.1Tribonema minus UTEX_B_3156 polypeptideContig_6 446706..447368 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2090 ID=mRNA_2090|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_6:446706..447368+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGTGTGCACGAAGGCGGTGACGCCGGCGCTGGGCCTGCGCGCGTGCAC
GGAGTTCGTGCGCGGCGCGCTGCTGCCACGCGCCGCAGCGCTCAGCGCGC
CCGCGCCGCGCACGCTCGTGTCTGGCGTCACCGCCGCCGCCAAGCAGCGG
CCGCAGGCGGTCGTGGAGGGGCTGCTGGTGCCACTGCTGCACGGCGATGC
CGCCGCCGGCGACGGCAGCGCTGCTGCTGCTGGCGACAGCGGCGCTGGTG
TAGGTGACAGCAGCAGCGGCGGGCGCATGGCACCTGGCAGTGCGCAATGC
GAGCTGCTGCTGCGCACAGCGCGCTCCGCGCTGCCGCCGCATGCGGCAGC
GCCGCTGGTGGCGGCGGCGTGCGACCCTCGCTGCGCGTGGAATGACGGCA
CCGTTGCTCTCGTGACGTCACTGCTCGGCATGAAGCTGGTGCTCGACGAC
AGCGCCGTTGCCGCACTGGCGGGCAGAATCGAGGCGGAGGCGGAGCGCGC
TGAGCAGTGCAAGTCGTTGAAGTTTGCGACGCTGCTGCACACGCTGGTGC
TGAAGTACGGGCCGCAAGCCGGGCCGCACGCGGCGGTGCTGAGGACAGCT
GCCGAGAAGAACACCACCTTCATGAAGAAGAGCGCATTGTCCGCTCTGCA
GCGGTTGAAAAGC
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protein sequence of jgi.p|Trimin1|151488

>Trimin1|151488|gw1.6.288.1 ID=Trimin1|151488|gw1.6.288.1|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQR
PQAVVEGLLVPLLHGDAAAGDGSAAAAGDSGAGVGDSSSGGRMAPGSAQC
ELLLRTARSALPPHAAAPLVAAACDPRCAWNDGTVALVTSLLGMKLVLDD
SAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTA
AEKNTTFMKKSALSALQRLKS
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mRNA from alignment at Contig_6:446706..447368+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2090 ID=mRNA_2090|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_6:446706..447368+ (Tribonema minus UTEX_B_3156 )
GCGGTGTGCACGAAGGCGGTGACGCCGGCGCTGGGCCTGCGCGCGTGCAC GGAGTTCGTGCGCGGCGCGCTGCTGCCACGCGCCGCAGCGCTCAGCGCGC CCGCGCCGCGCACGCTCGTGTCTGGCGTCACCGCCGCCGCCAAGCAGCGG CCGCAGGCGGTCGTGGAGGGGCTGCTGGTGCCACTGCTGCACGGCGATGC CGCCGCCGGCGACGGCAGCGCTGCTGCTGCTGGCGACAGCGGCGCTGGTG TAGGTGACAGCAGCAGCGGCGGGCGCATGGCACCTGGCAGTGCGCAATGC GAGCTGCTGCTGCGCACAGCGCGCTCCGCGCTGCCGCCGCATGCGGCAGC GCCGCTGGTGGCGGCGGCGTGCGACCCTCGCTGCGCGTGGAATGACGGCA CCGTTGCTCTCGTGACGTCACTGCTCGGCATGAAGCTGGTGCTCGACGAC AGCGCCGTTGCCGCACTGGCGGGCAGAATCGAGGCGGAGGCGGAGCGCGC TGAGCAGTGCAAGTCGTTGAAGTTTGCGACGCTGCTGCACACGCTGGTGC TGAAGTACGGGCCGCAAGCCGGGCCGCACGCGGCGGTGCTGAGGACAGCT GCCGAGAAGAACACCACCTTCATGAAGAAGAGCGCATTGTCCGCTCTGCA GCGGTTGAAAAGC
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Coding sequence (CDS) from alignment at Contig_6:446706..447368+

>mRNA_2090 ID=mRNA_2090|Name=jgi.p|Trimin1|151488|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_6:446706..447368+ (Tribonema minus UTEX_B_3156 )
GCGGTGTGCACGAAGGCGGTGACGCCGGCGCTGGGCCTGCGCGCGTGCAC
GGAGTTCGTGCGCGGCGCGCTGCTGCCACGCGCCGCAGCGCTCAGCGCGC
CCGCGCCGCGCACGCTCGTGTCTGGCGTCACCGCCGCCGCCAAGCAGCGG
CCGCAGGCGGTCGTGGAGGGGCTGCTGGTGCCACTGCTGCACGGCGATGC
CGCCGCCGGCGACGGCAGCGCTGCTGCTGCTGGCGACAGCGGCGCTGGTG
TAGGTGACAGCAGCAGCGGCGGGCGCATGGCACCTGGCAGTGCGCAATGC
GAGCTGCTGCTGCGCACAGCGCGCTCCGCGCTGCCGCCGCATGCGGCAGC
GCCGCTGGTGGCGGCGGCGTGCGACCCTCGCTGCGCGTGGAATGACGGCA
CCGTTGCTCTCGTGACGTCACTGCTCGGCATGAAGCTGGTGCTCGACGAC
AGCGCCGTTGCCGCACTGGCGGGCAGAATCGAGGCGGAGGCGGAGCGCGC
TGAGCAGTGCAAGTCGTTGAAGTTTGCGACGCTGCTGCACACGCTGGTGC
TGAAGTACGGGCCGCAAGCCGGGCCGCACGCGGCGGTGCTGAGGACAGCT
GCCGAGAAGAACACCACCTTCATGAAGAAGAGCGCATTGTCCGCTCTGCA
GCGGTTGAAAAGC
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