mRNA_2131 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A835YWU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU1_9STRA) HSP 1 Score: 949 bits (2453), Expect = 0.000e+0 Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 1
Query: 124 MVFSGRPLSTVAVCLAALLVIRSSCAAPLDAAVITEVDSYQGLLDVAGTVDDTDTGKRFEREVMMLLYEGGKCTADFKKHGLDEYGRLQPEDVALVAADVNKVDQVFLEKFGIVDDGDDMPCPTAVVIRQRSPLQNPTFEVVGSDPDDPFAIADGVLKSQEVHIGSVNDYDFPIKVMFVWRDGKERPHLRRLEPGRESWMKTYRSTELVARALDDGRELQRMRVRWHGLFTVAHRNCNIENCGIVERKEVELDEEEIRAREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKWIQER 1515
MVFSGRPLSTVAVCLAALLVIRSSCAAPLDAAVITEVDSYQGLLDVAGTVDDTDTGKRFEREVMMLLYEGGKCTADFKKHGLDEYGRLQPEDVALVAADVNKVDQVFLEKFGIVDDGDDMPCPTAVVIRQRSPLQNPTFEVVGSDPDDPFAIADGVLKSQEVHIGSVNDYDFPIKVMFVWRDGKERPHLRRLEPGRESWMKTYRSTELVARALDDGRELQRMRVRWHGLFTVAHRNCNIENCGIVERKEVELDEEEIRAREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKWIQER
Sbjct: 1 MVFSGRPLSTVAVCLAALLVIRSSCAAPLDAAVITEVDSYQGLLDVAGTVDDTDTGKRFEREVMMLLYEGGKCTADFKKHGLDEYGRLQPEDVALVAADVNKVDQVFLEKFGIVDDGDDMPCPTAVVIRQRSPLQNPTFEVVGSDPDDPFAIADGVLKSQEVHIGSVNDYDFPIKVMFVWRDGKERPHLRRLEPGRESWMKTYRSTELVARALDDGRELQRMRVRWHGLFTVAHRNCNIENCGIVERKEVELDEEEIRAREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKWIQER 464
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE) HSP 1 Score: 446 bits (1148), Expect = 5.660e-150 Identity = 226/457 (49.45%), Postives = 309/457 (67.61%), Query Frame = 1
Query: 145 LSTVAVCLAALLVIRSSCAAPLDAAVITEVDSYQGLLDVAGTVDDTDTGKRFEREVMMLLYEGGK-CTADFKKHGLDEYGRLQPEDVALVAADVNKVDQVFLEKFGI--VDDGDDMPCPTAVVIRQRSPLQNPTFEVVGSDPDDPFAIADGVLKSQEVHIGSVNDYDFPIKVMFVWRDGKERP-HLRRLEPGRESWMKTYRSTELVARALDDGRELQRMRVRWHGLFTVAHRNCNIENCGIVERKEVELDEEEIRAREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKW 1503
L+ VAV LA+ ++ S+ + + A + D Y+ L+ G+ +D DTG+RF RE M+L+++G + C DF GL +G P+ +LV+ D + D+ L+K G+ + CP+ ++ +RS ++ P + D + + +K+Q+V +G VN+ DF + + + W + +P H+R L PG E+WM +Y++T ++A + E+ R V+ HGLFTVA R+C E CG E E D AR+Q ++ R+ NN +QP GLPRFT+VGFKK VPDDVWD++ TYY +NK++PK E+W K NV+TNN+EAPSYMVNLPE G LK IF GLRPILEEWSGVELV T+CYG+R YT SWLANHVDT+ATH +S I+ VDQ+V +DWPL I+DHAGND+NITM PRD+VLYESATCVHGRPSTF G +YAN F+HYKP DP KW
Sbjct: 10 LNPVAVALASAALLLSTSSPVVSGAPVVVTD-YKQLVGTIGSNNDYDTGERFAREGMVLVHKGDESCAPDFDTLGLSVFGD-HPDMYSLVSVDADHADKELLDKLGVDPATLSEPKKCPSLSIVPRRSTVEAPAVILPTLDKRGSYHL--NAVKTQQVSVGIVNEMDFDLDIHYQWWNEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRYLVKGHGLFTVAERSCTAETCGTSEGTETPQDVASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKTTVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFHGNYYANAFVHYKPKDPEKW 462
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7S2UT49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT49_9STRA) HSP 1 Score: 246 bits (628), Expect = 6.380e-72 Identity = 109/195 (55.90%), Postives = 143/195 (73.33%), Query Frame = 1
Query: 922 RVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSGV-ELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKW 1503
R+R+N + P +P FT+VGF+K+R P DVW+M+ TYY NK++ +E W N YTN+ E+P+YM++LPE G +KP IF L+P LEEWSGV EL T+CYGIR Y G+ L HVD +TH IS IINVDQ+V + W L+I+DH+G+ HN+TMAP DMVLYESA+C HGRP G +Y N F+HY+P DP+ W
Sbjct: 281 RIRHNKEHPSIVPHFTEVGFEKVRTPPDVWEMIQTYYHANKEHTALEVWDDSNTYTNHFESPTYMIHLPENGRMKPEIFRRLQPYLEEWSGVDELEGTACYGIRVYQEGAELRGHVDRISTHAISVIINVDQDVEEPWYLHIYDHSGSAHNVTMAPGDMVLYESASCQHGRPFPLKGNYYTNTFVHYRPKDPALW 475
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7S2THP0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THP0_9EUKA) HSP 1 Score: 228 bits (581), Expect = 2.310e-66 Identity = 132/323 (40.87%), Postives = 196/323 (60.68%), Query Frame = 1
Query: 571 FAIADGVLKSQEVHIGSVNDYDFPIKVMFVWRDGKERPHLRRLEPGRESWMKTYRSTELVARALDDGRELQRMRVRWHGLFTVA------HRNCNIENCGIVERKEVELDEEEIRA--REQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPE--TGP-LKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKWI 1506
F+IA+ + E HIG +D D + + +V G+E + ++ P +SW+ +Y + + V R +G+++ V+ F+VA H + E C +ER + + +++ QNE R N +Q P L FT++GF+K ++PDDVW++L +YY NK + +E+W N Y N+ E+ +M+ LPE TG K IF GLRP LEEWSG EL T YG+R Y ++L NHVD ATH +SAI+++ + + WPLNI+DH GN+HNIT++P +MVLYESATCVHGRPS F G++Y N F H++P + WI
Sbjct: 21 FSIAEA---NPEAHIGFGSDCDSDLDIFWVNPQGEE-VSVTKVAPQGQSWIGSYLNHKFVYRL--NGKKVGEATVKSKSQFSVAQCGHPCHEHYGEEPC--LERLDGRIRRAQLQPVWDSQNEDRRQTNRIQ-PQNLKNFTELGFEKRKIPDDVWELLRSYYENNKDSIVLEKWPSTNPYINHWESVPFMIWLPELHTGDETKRKIFEGLRPHLEEWSGTELEHTDLYGMRVYKNNTFLENHVDRVATHVVSAIMHIADKQDIPWPLNIYDHYGNEHNITISPGEMVLYESATCVHGRPSLFQGEYYVNAFAHFRPKN---WI 331
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7R9UF35_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF35_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.670e-61 Identity = 105/208 (50.48%), Postives = 143/208 (68.75%), Query Frame = 1
Query: 922 RVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPE---------TG-PLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPSKWIQER 1515
R++ NV QP FTDVGF+K+RVP+D+W + Y++ + + K E W KGN+Y N+ E P+YMVNL + TG LK I++G +PI+E+W+G EL STS YGIR Y G+ LA+H D R SAIINVDQ+V++ WPL I+DH+G HN+TMAP DMVLYES CVHGRP G++YAN+F+H++P D S I+++
Sbjct: 146 RIKMNVNQPKTQNHFTDVGFRKMRVPEDIWKEIQNYWKWSPKKEKDEEWPKGNIYVNHWEVPTYMVNLEDHSEDPKGSLTGWQLKKRIWDGTKPIIEKWTGKELKSTSLYGIRVYHNGAILASHCD-RLPLVSSAIINVDQDVDEPWPLEIYDHSGKAHNVTMAPGDMVLYESHVCVHGRPFPLKGRYYANLFVHFEPMDGSHHIKKQ 352
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7R9W969_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W969_9STRA) HSP 1 Score: 195 bits (496), Expect = 2.770e-53 Identity = 95/201 (47.26%), Postives = 136/201 (67.66%), Query Frame = 1
Query: 904 EQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETG------PLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPT 1488
EQ EK R+ +++QP + +TD GFKK+R P+++ +L Y+ +NK+ K+E+W G YTN+ EAP+YMV++ + G LK ++N RP +EEW+G+EL TS YGIR YT G+ LA HVD R SAIINV Q+V++DWPL ++ G +N+TM P DMVLYES + +HGR G++YAN+FIH++PT
Sbjct: 64 EQVEKDRLAMSIRQPQSVMNYTDTGFKKVRAPEELRKLLENYWNENKEKKKVEQWSTGYTYTNHWEAPTYMVSIEDGGLRGGGNSLKHKLWNAARPTIEEWTGMELAPTSLYGIRVYTEGAILAPHVD-RIPLISSAIINVAQDVDEDWPLEVYGRDGMAYNVTMKPGDMVLYESHSLIHGRVFPLKGRYYANIFIHFEPT 263
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7R9Z896_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z896_9CHLO) HSP 1 Score: 195 bits (495), Expect = 2.780e-52 Identity = 102/248 (41.13%), Postives = 148/248 (59.68%), Query Frame = 1
Query: 763 DDGRELQRMRVRWHGLFTVAHRNCNIENCGIVERKEVEL-------DEEEIRAREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETGPLKPAIFNGLRPILEEWSG-VELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYK 1482
+DG EL R ++ + G+FTV + C +E K E+ D E ++ RE+ + R+ QP + +T GF K + P +W L Y+ NK++ KIE W ++T+ +A + + E LKP + ++P+L W+G V L T+ YG+RAYTRG+WL NHVD R TH ISAI+N+DQ+V++ WPL I DHAG HNITM P D+++YE ATC HGR +G++ AN FIH+K
Sbjct: 269 EDGNELARKQLLYSGMFTVKDPSI----CNYLEDKSCEMPKLPWPTDPEVLKRREKEDALRLSMLKNQPSTITHYTPTGFAKTKCPRALWQALRGYFDVNKRHAKIEHWHDWQIFTSQYDAQALHTPILEGDFLKPRLNAIIQPMLSAWAGGVNLEPTAMYGVRAYTRGAWLKNHVDMRGTHIISAIVNIDQDVDEPWPLEIRDHAGQLHNITMVPGDIIMYEGATCEHGRQYPLNGRWLANTFIHFK 512
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7S1D171_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D171_CYCTE) HSP 1 Score: 195 bits (495), Expect = 2.890e-52 Identity = 94/199 (47.24%), Postives = 134/199 (67.34%), Query Frame = 1
Query: 907 QNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPETG------PLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKP 1485
QNE+ RV +++QP + +TD+GFKKI+ P+ V+ ++ ++ +NK N K+E+WG GN YTNN +P+YMV++ ++ LK I++ R +EEW+G EL S YGIR Y GS LA HVD R SAIINVDQ+V++ WP+ ++ H G N+TM P DMVLYES + +HGRP G+FYAN+FIH++P
Sbjct: 145 QNERERVAMSLRQPQSMQNYTDIGFKKIKAPEKVFKLIKEFWDKNKDNRKLEQWGTGNTYTNNWASPTYMVSVEDSSLRGGGVVLKQHIWDAARETIEEWTGQELTQCSLYGIRVYEEGSLLATHVD-RLPLVSSAIINVDQDVDEPWPIEVYGHDGKATNVTMEPGDMVLYESHSVLHGRPFPLKGRFYANIFIHFEP 342
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7S2YH17_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YH17_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.790e-51 Identity = 92/198 (46.46%), Postives = 128/198 (64.65%), Query Frame = 1
Query: 922 RVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNKQNPKIERWGKGNVYTNNLEAPSYMVNLPET------GPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPS 1497
RV +++QP + +T VG++KIR PD VW ++ ++ QN + K+E+WG GN YTNN E+P+YM+++ + G LK AI+N R L W+G EL S YGIR YT G+ LA HVD R SAI+NV Q+V++ WPL + H G N+TM P DMVLYES + +HGRP G++ AN+FIH++PT S
Sbjct: 5 RVEMSLRQPQSMQNYTKVGYRKIRAPDAVWKLVKQFWDQNSEVRKLEQWGVGNTYTNNWESPTYMISVEDKSLRGAGGRLKQAIWNAARDTLSAWTGQELTQCSLYGIRVYTEGAVLATHVD-RMPLVSSAILNVAQDVDEPWPLEVIGHDGKAENVTMLPGDMVLYESHSVLHGRPFPLKGRYMANIFIHFEPTGHS 201
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Match: A0A7S2PFM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PFM3_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.210e-50 Identity = 92/200 (46.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query: 922 RVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNK--QNPKIERWGKGNVYTNNLEAPSYMVNLPET------GPLKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKPTDPS 1497
RV +++QP G+ +TD+GFKKI+ P VWD + ++ NK +N + E W KGN YTN+ AP+YMV++ + LK I+N + +EEW+G EL S YGIR YT GS LA HVD R SAIINVDQ+V++ WP+ ++ H G +N+TM P DM+LYES + +HGRP G++YAN+F+H++P S
Sbjct: 161 RVEMSLRQPAGMQNYTDIGFKKIKAPPAVWDQVKVFWEANKDRKNWQDENWPKGNTYTNHWVAPTYMVSVEDGRLRGAGSKLKNRIWNAAQSTIEEWTGQELTKCSLYGIRVYTEGSILATHVD-RMPLVSSAIINVDQDVDEPWPIEVYGHDGKAYNVTMEPGDMILYESHSVLHGRPFPLKGRYYANIFVHFEPVGHS 359 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|79394 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2131 ID=mRNA_2131|Name=jgi.p|Trimin1|79394|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1572bp|location=Sequence derived from alignment at Contig_6:794630..801818+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CACGCAACGCCAGTTGGCTAGGCTGTGAGAGGGGTGGACCGAGCAAGGCGback to top protein sequence of jgi.p|Trimin1|79394 >Trimin1|79394|CE79393_222 ID=Trimin1|79394|CE79393_222|Name=jgi.p|Trimin1|79394|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=465bp MVFSGRPLSTVAVCLAALLVIRSSCAAPLDAAVITEVDSYQGLLDVAGTVback to top mRNA from alignment at Contig_6:794630..801818+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2131 ID=mRNA_2131|Name=jgi.p|Trimin1|79394|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7189bp|location=Sequence derived from alignment at Contig_6:794630..801818+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:794630..801818+ >mRNA_2131 ID=mRNA_2131|Name=jgi.p|Trimin1|79394|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1395bp|location=Sequence derived from alignment at Contig_6:794630..801818+ (Tribonema minus UTEX_B_3156 )back to top |