Trimin1|350234|estExt_Genemark1.C_Ctg_590052 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350234
Unique NameTrimin1|350234|estExt_Genemark1.C_Ctg_590052
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length100
Homology
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.020e-27
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0
Query:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK 56
            MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK 56          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.260e-24
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0
Query:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK 56
            MSSSGPSKMTGTKDE+LGSAKATIGSTIGNHQMEAEGHTQNK GTA+K AA  KQK
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQK 56          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.330e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0
Query:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK 56
            MSSSGPSK+TGTKDE+LGSAKATIGSTIGNH+MEAEG+ Q++ GT E +AA AKQ+
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQ 56          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQK 56
            MSSSGPSK+  TKD+++G  KAT+G TIGNHQMEAEG+ Q++ GT EK  AAAKQK
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQK 56          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.760e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAKQ 55
            MSSSGPSK++ TKD+++G  KAT+G TIGNH MEAEG+ Q+  GTAEK+AA AKQ
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQ 55          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.150e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 54
            M SSGP K+  T+D+++G  K T+G TIGNH+MEAEGH Q   GTAEK AAAAK
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAK 54          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A137NRC1_CONC2 (CsbD domain-containing protein n=2 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NRC1_CONC2)

HSP 1 Score: 51.2 bits (121), Expect = 3.080e-6
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    4 SGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 54
            S PSK     ++ +GS K T+GS +GNH+M+A+G+ QNK G AE++AA  K
Sbjct:    2 SDPSKTNAQYNQAMGSVKETVGSALGNHEMQAKGNVQNKQGHAEQSAAETK 52          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A137NR95_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NR95_CONC2)

HSP 1 Score: 51.2 bits (121), Expect = 1.680e-5
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    4 SGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 54
            S PSK     ++ +GS K T+GS +GNH+M+A+G+ QNK G AE++AA  K
Sbjct:  114 SDPSKTNAQYNQAMGSVKETVGSALGNHEMQAKGNVQNKQGHAEQSAAETK 164          
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Match: A0A137NRH7_CONC2 (CsbD domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NRH7_CONC2)

HSP 1 Score: 48.1 bits (113), Expect = 4.830e-5
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0
Query:    6 PSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 54
            PSK+    ++ +G+AK  +GS IGN  +EA+GH QNK G AE+ AA  K
Sbjct:    4 PSKINAQYNQAMGTAKEVLGSAIGNTNLEAKGHIQNKEGKAEQTAAETK 52          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350234 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YNR6_9STRA1.020e-27100.00Putative cruciform DNA binding protein n=2 Tax=Tri... [more]
A0A835YX54_9STRA2.260e-2489.29Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A836CHS6_9STRA1.330e-1876.79Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z1U0_9STRA2.500e-1667.86DNA binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835Z1D8_9STRA5.760e-1567.27Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z2J6_9STRA2.150e-1162.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A137NRC1_CONC23.080e-649.02CsbD domain-containing protein n=2 Tax=Conidiobolu... [more]
A0A137NR95_CONC21.680e-549.02Uncharacterized protein n=1 Tax=Conidiobolus coron... [more]
A0A137NRH7_CONC24.830e-548.98CsbD domain-containing protein n=1 Tax=Conidiobolu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..46
NoneNo IPR availablePANTHERPTHR40460CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCEcoord: 3..98
IPR036629YjbJ superfamilySUPERFAMILY69047Hypothetical protein YjbJcoord: 8..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:600560..601399 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350234mRNA_11145Tribonema minus UTEX_B_3156 mRNAContig_59 600234..601442 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350234|estExt_Genemark1.C_Ctg_590052 ID=Trimin1|350234|estExt_Genemark1.C_Ctg_590052|Name=jgi.p|Trimin1|350234|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNA
AAAKQKVEGAGDSLFGHAQKATGQVLGNERMQGEGEMNKAKGTAKSDTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036629YjbJ_sf