mRNA_11158 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168669
Unique NamemRNA_11158
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 7.350e-155
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
            LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM
Sbjct:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 6.280e-81
Identity = 133/220 (60.45%), Postives = 164/220 (74.55%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPG--------REQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
            +NS+LQQLYH + FS  L+G  P RR G        +EQDE+L +LQVLFASL + QR+++DT+P C+ F+DYDG+P+  AEQKD  EFC+ LL KLE SS  A  L+   FGGTL YQ++ R+  C HTS R EPF++LTAEVQ K++L  +L L  +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM RHKLNHRC+FPM
Sbjct: 2687 MNSLLQQLYHVQDFSLQLLGLVPDRRAGGGESNHPLQEQDEVLLQLQVLFASLRISQRKFYDTKPFCAVFMDYDGQPLRHAEQKDVNEFCTHLLHKLEGSSKQAGSLIDKVFGGTLAYQVISRD--CEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPM 2904          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 7.440e-80
Identity = 131/220 (59.55%), Postives = 164/220 (74.55%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPG--------REQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
            +NS+LQQLYH + FS  L+G  P RR G        +E+DE+L +LQVLFA+L + QR+++DT+P C+ F+DYDG+P+  AEQKD  EFC+ LL KLE SS  A  L+   FGGTL YQ++ R+  C HTS R EPF++LTAEVQ K++L  +L L  +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM RHKLNHRC+FPM
Sbjct: 1704 MNSLLQQLYHVQDFSLQLLGLVPDRRAGGGESSDPLQEEDEVLLQLQVLFATLRISQRKFYDTKPFCAVFMDYDGQPLRHAEQKDVNEFCTHLLHKLEGSSKQAGSLIAKVFGGTLAYQVISRD--CEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPM 1921          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A7S3MAA4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAA4_9STRA)

HSP 1 Score: 189 bits (479), Expect = 8.210e-56
Identity = 104/226 (46.02%), Postives = 137/226 (60.62%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQD-------------ELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIV--PREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
            +NS +QQL+H  AF   L+    A +  ++               ELLF+LQV+F  ++  Q+RY+DT P C +FLDYD  P+SL EQKD  EF  ML DK+E + +AA     A    T+Q +IV   R     + S R+E F MLTAEV+ K TL  +L+LFT+ E   GDNK    + GR+V A R CAI+ LPPTLI+HLKRFEF+LETM R K+N   +FP
Sbjct:   31 MNSFIQQLFHIPAFKTGLLRINAAAKTAKDATSNNSLEEKPDPNVELLFQLQVMFGFMNFSQKRYYDTLPFCRTFLDYDAEPISLTEQKDINEFAGMLFDKIEHNKEAA-----ALLASTIQGKIVWRTRSLETPYKSEREETFYMLTAEVKDKATLEDSLELFTADELFSGDNKIEDAEAGRKVDALRGCAIRSLPPTLIIHLKRFEFDLETMNRKKVNDHISFP 251          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 187 bits (475), Expect = 4.200e-51
Identity = 89/214 (41.59%), Postives = 140/214 (65.42%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARE--LVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
            +NS++QQ +    F   ++    +    ++++ LL++LQ +F  L   +++Y+DTRP CSS+ D++G+PM++ +Q+DA EF +MLLD+LE      +E  L+   FGG L  QI+ ++  C H S R+E F  L+ +++ K ++  +L L+  G+ L+GDNK+ C +C  +V A +RC +K+LP  LIVHLKRFEF+LETM R KLN  C FPM
Sbjct: 1407 MNSLMQQFFMIPGFRWGMLEVQDSEE--KKEESLLWQLQTIFGYLQESEKKYYDTRPFCSSYKDWEGQPMNVGQQQDADEFMNMLLDRLESILKKTQEEKLLSQFFGGALSNQIISKD--CTHVSEREENFFTLSLDIKNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPM 1616          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A482SHC7_9ARCH (USP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHC7_9ARCH)

HSP 1 Score: 183 bits (465), Expect = 9.150e-50
Identity = 97/211 (45.97%), Postives = 134/211 (63.51%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
            +N+ +QQLYH + F+  L+  +       E   LL ++Q++FA L   Q+R +DT P C + +DYDG+P+SL+EQKD  EF  ML DKLE++S AA EL+  T  GT  +Q    E    + S R+E F M+T EV+ K TL  AL+L  + E   G+NK    +  ++V A RRCAI+DLPP LI+HLKRFEF+LETM R K+N   +FP
Sbjct: 1823 MNAFIQQLYHAQTFTDQLLSVSTYAEEA-EYSHLLLQMQMMFAYLKYSQKRVYDTLPFCKALIDYDGQPISLSEQKDINEFAGMLFDKLEKNS-AAAELLAQTIQGTYIWQTKSLET--TYYSEREEKFYMITVEVKNKKTLLEALELTVAEELFTGENKIEDSENNKKVDAVRRCAIRDLPPVLIIHLKRFEFDLETMNRKKVNDYMSFP 2029          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA)

HSP 1 Score: 174 bits (442), Expect = 9.190e-47
Identity = 88/214 (41.12%), Postives = 134/214 (62.62%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELV--KATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
            +NS+LQQL+ T  F   ++ A  A +   + D +L +LQ LFA L  G  +Y +T   C  +   +G+P++ ++Q DA+EF + LLDKLE        L+  +  FGG L  Q++  + GC H   R+EPF  ++ +++ K+ L +AL+LF  GE L G+NKY+CE CG  V+  +RC IKDLP  L++HLKRFEF+ +T+ R K++  C+FPM
Sbjct:    1 MNSLLQQLFLTTDFRKVVLQAPNATQD--KSDSVLHQLQCLFAGLQEGITKYQETTSFCRGYK-VNGQPVNTSQQMDAWEFFNTLLDKLENELRGTNSLISMRKIFGGNLTNQLIGVQ-GCDHKREREEPFYTISVDIKQKENLESALELFVQGEMLTGENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPM 210          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: X6N2M1_RETFI (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N2M1_RETFI)

HSP 1 Score: 173 bits (439), Expect = 1.890e-46
Identity = 91/234 (38.89%), Postives = 135/234 (57.69%), Query Frame = 1
Query:    1 LNSVLQQLY--------------HTRAFSGPLMG-----AAPARRPG-REQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAAREL--VKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 636
            +NS+LQQL+              HT A +   +G     +   R+ G   +D +L+++Q+LF  L + Q++++DT PLC++   YDG P+ L EQ+D  EFC+ L D+LE   +    +  ++  FGG L  QI+ ++  C H S + E FL ++  V+ K  L  +LDL+  G+ LDGDNKY C QC  ++ A RR   K LP  L++HL RFEF+  +MTR KLN R  FPM
Sbjct:  477 MNSLLQQLFINEDFRRDILEARLHTSAMAEENLGNEEKESLELRKHGILPKDSVLYQMQLLFGYLMISQKKFYDTMPLCTTLKGYDGNPLPLGEQQDVNEFCNRLFDELEHDLNKTDRMDAIRENFGGYLVSQIISKDDTCDHRSEQVERFLTVSLTVKNKANLRESLDLYVQGDLLDGDNKYFCSQCNTKILALRRVCFKTLPKCLLLHLSRFEFDFNSMTRLKLNSRFEFPM 710          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 173 bits (439), Expect = 2.890e-46
Identity = 91/213 (42.72%), Postives = 131/213 (61.50%), Query Frame = 1
Query:    1 LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLE-RSSDAARELV-KATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
            +NS++QQ +   +F   ++ A  A       D +L++LQ +F++L   ++R  DTRP   +F DYDG+PM++A Q D  EF + L D+LE R   +  E + K TFGG L  QI+ ++  C H S+R E    L  EV+ K ++  +L L+  GE LDGDNKY C  C R V A++R  +  LP TLIVHLKRFEF++ET+ R+K+N  C FP
Sbjct: 1833 MNSIMQQFFMIPSFRRNVL-AIDASAETDPADSMLYQLQCIFSNLQESEKRTFDTRPFTLTFKDYDGQPMNVAMQMDVDEFFTTLFDRLETRLKGSPHETIFKQTFGGQLIQQIISQD--CEHVSSRVEDCFALQCEVKNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFP 2042          
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Match: A0A7S1CQN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQN3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 8.150e-46
Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 1
Query:    4 NSVLQQLYHTRAFSGPLMGAA-PARRPGREQDELLFKLQVLFASLHVGQRRYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARE--LVKATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFP 633
            NSVLQQL+ T  F   ++ A  PA+ P   ++ +LF+LQ LF  L   +R+  D RP  ++F D DG P ++  Q+DA EF S+LLD++E +     +   +  TF G +  +I   +  C H S   EPF +L+  +    +L  AL   T+GE L GDN Y C  CG +V A +R  I++LPPTLIVHLKRFEF+ ETM + KLN RC+FP
Sbjct:  157 NSVLQQLFMTPRFRRAVLDAVDPAKDP---RESVLFQLQSLFGWLQESERKCKDPRPFFAAFKDLDGNPTNVRVQQDADEFLSLLLDRIETAVKGLPQEAAITRTFAGKVVNKITGEK--CGHVSDNQEPFQVLSVAINGHASLEEALSAHTAGEPLRGDNAYACGTCGHKVDAIKRLCIRELPPTLIVHLKRFEFDYETMLKRKLNSRCSFP 364          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQG3_9STRA7.350e-155100.00USP domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LU88_ECTSI6.280e-8160.45Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE7.440e-8059.55USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3MAA4_9STRA8.210e-5646.02Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
L8GPA8_ACACA4.200e-5141.59Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
A0A482SHC7_9ARCH9.150e-5045.97USP domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A6B2KX30_9EUKA9.190e-4741.12USP domain-containing protein n=2 Tax=Arcella inte... [more]
X6N2M1_RETFI1.890e-4638.89Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A0D2WMI0_CAPO32.890e-4642.72Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
A0A7S1CQN3_9STRA8.150e-4643.19Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:740429..744039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168669|e_gw1.59.12.1
BRITEko00000,ko01000,ko01002,ko04121
KEGG koko:K11840,ko:K11869
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
Evalue1.03e-81
Seed ortholog2880.D8LU88
Hectar predicted targeting categoryother localisation
TranscriptId168991
TrackFilteredModels1
ProteinId168669
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168669gene_11158Tribonema minus UTEX_B_3156 geneContig_59 740429..744039 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11158_1exon_11158_1Tribonema minus UTEX_B_3156 exonContig_59 740429..740527 +
exon_11158_2exon_11158_2Tribonema minus UTEX_B_3156 exonContig_59 741442..741567 +
exon_11158_3exon_11158_3Tribonema minus UTEX_B_3156 exonContig_59 742732..742911 +
exon_11158_4exon_11158_4Tribonema minus UTEX_B_3156 exonContig_59 743806..744039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11158CDS_11158Tribonema minus UTEX_B_3156 CDSContig_59 740429..740527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168669Trimin1|168669|e_gw1.59.12.1Tribonema minus UTEX_B_3156 polypeptideContig_59 740429..744039 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11158 ID=mRNA_11158|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_59:740429..744039+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCAACTCGGTGCTGCAGCAGCTGTACCACACGCGCGCGTTCTCGGGGCC
GCTCATGGGCGCCGCGCCGGCGCGCCGCCCGGGACGCGAGCAGGACGAGC
TGCTGTTCAAGCTGCAGGTGCTGTTCGCGTCGCTGCACGTGGGGCAGCGC
CGCTACCACGACACGCGCCCGCTGTGCTCCTCGTTCCTAGACTATGACGG
GCGCCCCATGTCCCTGGCGGAGCAGAAAGACGCCTACGAGTTCTGCAGCA
TGCTTCTGGACAAGCTGGAGCGCAGCAGTGACGCCGCACGGGAGCTCGTC
AAGGCCACCTTTGGTGGCACGCTTCAGTACCAGATTGTGCCGCGCGAGCC
GGGCTGCGCGCATACATCCACGCGCGACGAGCCCTTCTTGATGCTGACCG
CGGAGGTGCAGACCAAAGACACGCTTGCGGCAGCGCTCGACCTCTTCACC
TCGGGCGAAACTCTCGACGGCGACAACAAATACCTGTGCGAGCAGTGCGG
GCGCAGGGTGGCGGCGCAGCGCCGCTGCGCCATAAAGGATTTGCCGCCGA
CGCTCATCGTGCACCTCAAGCGCTTCGAGTTCAACCTCGAGACGATGACG
CGCCACAAGCTCAACCACCGCTGCGCGTTCCCCATGTGA
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protein sequence of jgi.p|Trimin1|168669

>Trimin1|168669|e_gw1.59.12.1 ID=Trimin1|168669|e_gw1.59.12.1|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
LNSVLQQLYHTRAFSGPLMGAAPARRPGREQDELLFKLQVLFASLHVGQR
RYHDTRPLCSSFLDYDGRPMSLAEQKDAYEFCSMLLDKLERSSDAARELV
KATFGGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFT
SGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMT
RHKLNHRCAFPM*
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mRNA from alignment at Contig_59:740429..744039+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11158 ID=mRNA_11158|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3611bp|location=Sequence derived from alignment at Contig_59:740429..744039+ (Tribonema minus UTEX_B_3156 )
CTCAACTCGGTGCTGCAGCAGCTGTACCACACGCGCGCGTTCTCGGGGCC GCTCATGGGCGCCGCGCCGGCGCGCCGCCCGGGACGCGAGCAGGACGAGG TGATGATCAGTTCGTTGCCACAGCGCTCCGCTAAGCCCTAATGTTGGGTC TGACTGCATACGCGTGTTCTCGGGGCCGCTCACAGGCGCCGCGCCGGCGC GCCGCCCGGGCCGCGAACAGGACGAGGTGATGATCAGACGGTTTCCACAG CGCTCCGCTATGCCCTAACCCTAGCTCTGACCGCACGCGCCCGTTTTTGG GGCCGGCTGCGCTCCGGGCGCAAGCAGTTGCTGCAGCATCGACGAGAGTT GGGTCCTTGGTTGCTTCCACAGCGCTCCGCATAGCCCTAACCCTAGCTCT GACCGCACGCGTTCTCGGCACGTTCGTGAGCAGCTGTTTCAGCATTGACA AGTGTCGGGTTCTCAGTGCTCCGCCTCACCCTCGATATCAACCTTAACCC TGTGTTTGCGGCGTCGCTGCTGGCACACACCTCTGCCGTTGTTAGGGTTA GGGTTAGCCATGCCGATCTGGTGCACCACCACCACCAAGTCCTTGCTGAC TAGCGCATATGGAGCATGTACGATGGTGCCATGTCTGTCGTACGTATCTT GTGCCATCAGTCAGCAGTCATGTGCATGATGTGCATTTCTCTCAAGCCGG CCTGATTGTTGCTCTTGCTGGTGCAAGTTCTGCTCTGGCATACTGGCGAC GCCACTGACGCCTGTTGGCGATGATGAGGCGCAGGCAGTGCACGCAGGCA GTGAACATATTTAAGCTGTGCATGCAGGCTACAAGCTCGCCAAGTTGCAG CCTGCCGACACAGCTTCACGTAGCATGCACACCCTGTAGTCAGCGCAGTG ACTTGCCTACTCCTCCCCACAGGTACGTACACACAAAAAGCGCGTTCCAA GCATCTTTCGTGTAGCTGCTGATGCATCCTGTGCCCCTTGATGCCCCCCC CCCCCCACAGGAGCTGCTGTTCAAGCTGCAGGTGCTGTTCGCGTCGCTGC ACGTGGGGCAGCGCCGCTACCACGACACGCGCCCGCTGTGCTCCTCGTTC CTAGACTATGACGGGCGCCCCATGTCCCTGGCGGAGCAGGTGAGTTCAGC GCCGAGGGTCGCTGAAAAGGATGAGCAGCTTTTGTACGTTTGTGTGTTTT GTTGTGAGCGCTGTGCGTGAGCTCACCACGTACCCAGACTACGACGGGCG CCCCATGTCGCTAGCCAAGCAGGCAAGTTTGCCATCCCGTCTGTCGGCAA GAAATGCACCACCGGTGTGTGTGTGCGTCTGTTGTGGCCATTGTACGTGA GCCCAGCTTCTTAGTCCTCGACTCCTCAGCAGACTATGCCGCTGGCAGGG CTGGCGAGCTCGCCTCCTCCTTTGTTGACGTATCGGTTGCACAGGGTATG TATAGCATGGGCACGGCGTGCTGTTGCACCCGTTGAGGGGCTACAGCAAC ATGTTTTACAGCGTTCCTTGTGTAGAGGAGGGTAGCGTCTGAATGAATTT TGATGAGCAAGATACTCACGTCAGACCCTTGAGAGTCCCTGATACCGTTT CTGGGCACCCTCGTGTGGCCTGCAGCAGTTGTAACAGAACAGGTGCGCCA GCACCGTAACGACGCAACTCCTGGCCCTCTGGATGTGCACCTTCGGCTAG TGACGTTCAGACGCATGAGGCTTTGCACATCCGAAACATCTAGTTCAACA TTGTGTGCTGCCCGTTGCCCTTATTCCATACGTTCACGACGGCATGCACT GCACTCTGTCGATCGAATCTGGGAGTTGTGGGTGGACTTTCAGCATGCTT GCCATATACCTATACCTGAAGCCATGATCTTACACTCACAACAAGGATTC ATGAATGATTTCAACAAACACTAGCAAGGGCGTGGTCACGATCTTCGTTC CACGCATGCTGTCGCCGCGCGCCGCAACAGGAAGAGGCCTATGAGTTCTG CGGCATGCCGCCGGACAAGCTCGAGCACACTCGGCAGATTTCTTTTAATG AGAGTTGCGGAGCCGTCAAGCGGACAGGCTTCCAGCTCACACGTTAACAA TTTCCGTTCCGCACACGCCGCCGCTGCGCTGCCGCAACAGAAAGATGTCT ACACATTCTGCTGCAGCATGCTGCTGGACAAGCTCGAGCGCTTTCGGTAG ATTTCGTTTGATGAGAGTTGCGGGGCCTTCAAGCGGGCGTTTTTTTTAGT TCACGTGTTCACAATCTTCATTCCATGCATGCTGTTGCCGCCCGCCGTAA CAGAAAGACGCCTACGAGTTCTGCAGCATGCTTCTGGACAAGCTGGAGCG CAGCAGTGACGCCGCACGGGAGCTCGTCAAGGCCACCTTTGGTGGCACGC TTCAGTACCAGATTGTGCCGCGCGAGCCGGGCTGCGCGCATACATCCACG CGCGACGAGCCCTTCTTGATGCTGACCGCGGAGGTGAGCGCTGCTGTAGA CTACTTAGTTTTGCCGAAGTGGTCGGCTTCATTGCATGTACTCGGGGTTT AGGGTTCGGGTTAACCGTCAGGTTGAACGTCGACGCGCAATGAGCCCTTC TTGATGCTGACCGCGGAGGTGAGCGCTGCTGTAGACTTCTTGGATGCGCG TTGCCCAAGTTGATGTAGTAGAAGTACGTATTGAACTTAAGGCTAGGGTT AAGTTTAGGATTGGGGTTAAACCTAAGCTAATTGTCGACGCGCGACGAGC CTTTTTTTATGCTGACCGCGGAGGTGAGCGCTGCTGTAGACAACGCTGGC TGCGCAGCGCTCAGCTCAATTGTACGTACTTCCGAAGTGCACAGGATGTA GGGTGAGGGTTGACTTCAAGCTAAACATCGACGCGCGACGAGCCCTTGCT GATGCTGACCGCGGAGGTGAGCGCTGCTGTAGACTTGTTGGTGGAGCAGT GCTCAACTTGAATGTCTGTACCTAGGTTTGAAGGTCAAGGTTAGGGTTTG TGTTAAGCGTCAGGTTGAACGTTGACGCGTGACGAGCCTTTTTTGATGCT GACCGCGGAGGTGAGCACTGCTGGTTTTGGTCGCGTGGAGACGCTGCTTG TCGCCAGATGGTATCTCGAGGTGGCCACTTGTGTCACCCTGCAAGCTGCT GCGGGGCCCTGTGAGCGTCTTGTCTCGAACTTCACGTTGGTCTGCACTTT TCCTGCACTGACGCAAGCGTCGATTGCACGCGCACGTCCCCCTTCATAAG ACAGGTGCACCGACCTTTGTCTCACGTTGCTGATGCAAGCACATGCTCAC CCCAGCAACCAGCACCTCTTGACGCTGATGCCAGCGTTCAATCCCCCCCC CCCCCCCCCCTTTGCCCATGAACACAGGTGCAGACCAAAGACACGCTTGC GGCAGCGCTCGACCTCTTCACCTCGGGCGAAACTCTCGACGGCGACAACA AATACCTGTGCGAGCAGTGCGGGCGCAGGGTGGCGGCGCAGCGCCGCTGC GCCATAAAGGATTTGCCGCCGACGCTCATCGTGCACCTCAAGCGCTTCGA GTTCAACCTCGAGACGATGACGCGCCACAAGCTCAACCACCGCTGCGCGT TCCCCATGTGA
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Coding sequence (CDS) from alignment at Contig_59:740429..744039+

>mRNA_11158 ID=mRNA_11158|Name=jgi.p|Trimin1|168669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_59:740429..744039+ (Tribonema minus UTEX_B_3156 )
CTCAACTCGGTGCTGCAGCAGCTGTACCACACGCGCGCGTTCTCGGGGCC
GCTCATGGGCGCCGCGCCGGCGCGCCGCCCGGGACGCGAGCAGGACGAGC
TGCTGTTCAAGCTGCAGGTGCTGTTCGCGTCGCTGCACGTGGGGCAGCGC
CGCTACCACGACACGCGCCCGCTGTGCTCCTCGTTCCTAGACTATGACGG
GCGCCCCATGTCCCTGGCGGAGCAGAAAGACGCCTACGAGTTCTGCAGCA
TGCTTCTGGACAAGCTGGAGCGCAGCAGTGACGCCGCACGGGAGCTCGTC
AAGGCCACCTTTGGTGGCACGCTTCAGTACCAGATTGTGCCGCGCGAGCC
GGGCTGCGCGCATACATCCACGCGCGACGAGCCCTTCTTGATGCTGACCG
CGGAGGTGCAGACCAAAGACACGCTTGCGGCAGCGCTCGACCTCTTCACC
TCGGGCGAAACTCTCGACGGCGACAACAAATACCTGTGCGAGCAGTGCGG
GCGCAGGGTGGCGGCGCAGCGCCGCTGCGCCATAAAGGATTTGCCGCCGA
CGCTCATCGTGCACCTCAAGCGCTTCGAGTTCAACCTCGAGACGATGACG
CGCCACAAGCTCAACCACCGCTGCGCGTTCCCCATGTGA
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