mRNA_11114 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|168629
Unique NamemRNA_11114
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A835YX33_9STRA (Activator of Hsp90 ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX33_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.640e-93
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEFNTRDQ 390
            WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEFNTRDQ
Sbjct:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEFNTRDQ 130          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A4D9CR70_9STRA (Aha1_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR70_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.810e-20
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGR----------IHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGT-CKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEF 375
            W K RL +LL       P             I V +V G++GDA+V   RGK++ L+++  T+EWEA    G   KG ++YPDV+ D + +Y+  +EVD  +PP AR  +D F+K  R GL+  + E    F+ +F
Sbjct:  286 WAKGRLQELLGECRFPIPARHFGAGLEEGAVIEVKKVTGLEGDAAVTFVRGKKKYLYDFLFTLEWEAGLAGGAKAKGTLRYPDVTPDNDDEYDTLLEVDQLTPPEARSLIDEFVKSSRTGLQGVVREKLRLFMADF 421          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A024TXV2_9STRA (MYND-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXV2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.020e-13
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAAS-PPNARPYVDIFIKGERAGLRAAINEAFAAFVDEF 375
            W K RL DLL NVE  +    I    V  I GDASV + RGK+R LF++   +EW      G  KG + + D+S+D  G YE AV+       P     + + + G   GLR A+ E  A FV E+
Sbjct:  201 WAKDRLKDLLGNVEATSRSYTIRGGDVKDIKGDASVCVVRGKKRFLFDFEFVIEWTVVGKDGY-KGKLTFQDISND--GDYEIAVQYKKKPVDPLELKELALAVNGPAEGLRHAVLERIATFVTEY 323          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A7S2UKK8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKK8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.320e-13
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGR-------IHVTRVVGI-DGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCE--GKYEFAVEVDAASPPNARPYVDIFIK--GERAGLRAAINEAFAAFVDEF 375
            W    LT  L  V  E P G        + VTRV  + +G ASV   R K+R ++E++V++EWE +    TC+G M +PD+    E    Y+    +    PP+A+P ++ F+K  G R  + AAI+E    F   +
Sbjct:  304 WANDTLTQALKEVTFEFPKGSPAPPGSVVRVTRVKHVSEGHASVATVRSKKRYMYEFHVSIEWELKLGSETCRGSMVFPDIDGTVELGDGYDMTDFITTEGPPDAKPLLERFVKNDGFRTNVHAAIDEWVRLFQSTY 440          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A7S0BWX5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWX5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.370e-12
Identity = 43/138 (31.16%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETP-----PGRI-HVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEW--NCGTCKGVMQYPDVSDDCEGKYE---FAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEFNT 381
            W K+ LT  L + E   P     PG +  +T V  ++G AS+   RGKRR ++E++ T+EWE +   +  TC G +++PD+   C+G+YE   + V+    +   A+  +D F+K    GLR  + E    +   F +
Sbjct:  230 WAKETLTQALLSAEYSLPLSSPQPGAVVKITNVKSLNGHASIASVRGKRRYMYEFSTTLEWEMDIPSDGNTCTGSIEFPDIDGTCDGEYEMTNYTVKSVGTAGGAAKHLLDRFVKN--GGLRDVLTEKLNEWATLFQS 365          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A1V9Y9K8_9STRA (Hsp90-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9K8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.900e-9
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPY-VDIFIKGERAGLRAAINEAFAAFVDEF 375
            W K+RL +L S++EV      I    V  I GDASV + RGK+R LF++  T+EWEA    G  KG ++  D+ +D  G YE     D           +   + G+ +GL   + +    F  +F
Sbjct:  175 WAKERLEELFSSLEVLQSSMTIRTKPVKDIKGDASVCVIRGKKRFLFDFEFTIEWEAVGTLG--KGKLKCHDIGND--GDYEIQCVYDKKPSDTVEAQALHAAVMGKTSGLYYTVVQKVQQFNSDF 296          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A7S3JNR7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNR7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.720e-9
Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPP-GRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDC-EGKYEFAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEFNTR 384
            W   RL   L     + P    I VT V  + G+AS+ +SRGK R +F+Y   +EWEA  +  + KG +  P++S    +G+YE  +++  +S P++       ++      + A+N A   FV E+  R
Sbjct:  130 WVDDRLRHHLGTARCDFPTTNHICVTNVKKLSGEASIAVSRGKSRYIFDYVGKLEWEAVLDGDSYKGSINLPELSSTITDGRYEQQIKIKNSSAPSSPA-----LQAALPKFQDAVNAAICNFVSEYQQR 254          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A067BQU1_SAPPC (MYND-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQU1_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 9.650e-9
Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPY-VDIFIKGERAGLRAAINEAFAAFVDEF 375
            W K RL +LL++VEV      I    V  + GDASV + RGK+R LF++  T+EWEA       KG ++  D+ +D  G YE     D           V   +  + +GL  A+ +    F  +F
Sbjct:  181 WAKGRLEELLASVEVLHSSTTIRTKPVKDLKGDASVCVIRGKKRFLFDFEFTLEWEAVGL--NAKGKLKCHDIGND--GDYEIQCSYDKKPSDTIEAQAVHAAVTSKTSGLHYAVAQKIGQFSTDF 302          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A7S4SFP2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SFP2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.410e-8
Identity = 38/130 (29.23%), Postives = 64/130 (49.23%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEA--EWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVDIFIKGERAGLRAAINEAFAAFVDEFNTR 384
            WC  RL   L + +  +     +V  V G+ GDASV ++ GK+R +F+Y+  VE++   E +C    GV++ PD++  C  + E  ++    SP      V+      R  L   I  +  +FV +FN +
Sbjct:  369 WCTARLKSHLQSTQFTSISHTANVKAVTGMTGDASVAVTGGKKRYIFDYHCEVEYDILDEDDCVVASGVLKLPDINSACLQEMEVEIQGWKKSPTEKVSEVEEC----RNTLVDEIRNSVYSFVSDFNAQ 494          
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Match: A0A1V9Z9M5_9STRA (Hsp90 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9M5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.290e-8
Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 1
Query:    1 WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYNVTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVDIF--IKGERAGLRAAINEAFAAFVDEF 375
            W K+ L +L S VEV      I    +  I GDASV + RGK+R LF++  T+EWEA       KG ++  D+  D  G YE     D   P +A     ++  I    +GL  A+ E    F   F
Sbjct:  165 WAKEHLEELYSKVEVMKSSMTIRTKPIKDIKGDASVCVIRGKKRFLFDFEFTLEWEAVGL--NAKGKLKCHDMGSD--GDYEIQCMYDK-KPSDAIEAQAVYDAIMNNTSGLYFAVVEKMKQFTTNF 286          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168629 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835YX33_9STRA1.640e-93100.00Activator of Hsp90 ATPase n=1 Tax=Tribonema minus ... [more]
A0A4D9CR70_9STRA2.810e-2036.03Aha1_N domain-containing protein n=2 Tax=Monodopsi... [more]
A0A024TXV2_9STRA2.020e-1338.10MYND-type domain-containing protein n=2 Tax=Aphano... [more]
A0A7S2UKK8_9STRA2.320e-1332.85Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0BWX5_9STRA2.370e-1231.16Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1V9Y9K8_9STRA1.900e-932.54Hsp90-like protein n=1 Tax=Achlya hypogyna TaxID=1... [more]
A0A7S3JNR7_9STRA3.720e-930.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A067BQU1_SAPPC9.650e-932.54MYND-type domain-containing protein n=3 Tax=Saprol... [more]
A0A7S4SFP2_9STRA4.410e-829.23Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1V9Z9M5_9STRA8.290e-833.86Hsp90 (Fragment) n=1 Tax=Thraustotheca clavata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_59contigContig_59:291525..292911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|168629|e_gw1.59.34.1
Descriptionpositive regulation of catalytic activity in other organism involved in symbiotic interaction
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0457@1|root,KOG0548@2759|Eukaryota
Evalue1.07e-26
Seed ortholog2880.D7FQZ8
Hectar predicted targeting categoryother localisation
TranscriptId168951
TrackFilteredModels1
ProteinId168629
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168629gene_11114Tribonema minus UTEX_B_3156 geneContig_59 291525..292911 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11114_1exon_11114_1Tribonema minus UTEX_B_3156 exonContig_59 291525..291680 +
exon_11114_2exon_11114_2Tribonema minus UTEX_B_3156 exonContig_59 292675..292911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11114CDS_11114Tribonema minus UTEX_B_3156 CDSContig_59 291525..291680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|168629Trimin1|168629|e_gw1.59.34.1Tribonema minus UTEX_B_3156 polypeptideContig_59 291525..292911 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11114 ID=mRNA_11114|Name=jgi.p|Trimin1|168629|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_59:291525..292911+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGTGTAAGCAGCGCCTGACGGACCTGCTGAGCAATGTTGAAGTTGAGAC
TCCCCCTGGCCGCATACACGTGACGCGTGTGGTTGGCATTGATGGGGACG
CCTCAGTGATGATATCGCGGGGGAAACGCCGGTGCCTGTTTGAGTACAAT
GTCACGGTGGAGTGGGAAGCGGAGTGGAACTGCGGCACGTGCAAGGGCGT
CATGCAGTACCCCGACGTGAGCGACGACTGCGAGGGCAAGTACGAGTTTG
CAGTTGAAGTTGACGCCGCCAGCCCCCCCAACGCGCGCCCCTACGTCGAC
ATCTTCATCAAGGGCGAGAGGGCGGGGCTGCGCGCTGCCATCAACGAGGC
TTTTGCGGCCTTTGTGGACGAATTCAACACCAGAGATCAGTAG
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protein sequence of jgi.p|Trimin1|168629

>Trimin1|168629|e_gw1.59.34.1 ID=Trimin1|168629|e_gw1.59.34.1|Name=jgi.p|Trimin1|168629|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
WCKQRLTDLLSNVEVETPPGRIHVTRVVGIDGDASVMISRGKRRCLFEYN
VTVEWEAEWNCGTCKGVMQYPDVSDDCEGKYEFAVEVDAASPPNARPYVD
IFIKGERAGLRAAINEAFAAFVDEFNTRDQ*
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mRNA from alignment at Contig_59:291525..292911+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11114 ID=mRNA_11114|Name=jgi.p|Trimin1|168629|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1387bp|location=Sequence derived from alignment at Contig_59:291525..292911+ (Tribonema minus UTEX_B_3156 )
TGGTGTAAGCAGCGCCTGACGGACCTGCTGAGCAATGTTGAAGTTGAGAC TCCCCCTGGCCGCATACACGTGACGCGTGTGGTTGGCATTGATGGGGACG CCTCAGTGATGATATCGCGGGGGAAACGCCGGTGCCTGTTTGAGTACAAT GTCACGGTGAGTCACTTTAAGATCAACTTGCGGCACGTTTTAAAGCGCAA AAGGGAGCGTCAATTGGCCTAGGTTGGGTTGAACAGGCGCTGAAGGGTAC ACGTAGCAGGTGCAAGGTCCATGTATATCACAACGTGGTCAGGCCGCTTG CCATCCGCTTGCGCTTTGGAGCTTTAACATGAAAAATGCAGCTGCTCAGT GGCACAATTGGGGCCACACTGAGGTCGCGTGATTTGTGTGCGGCAGTGTT GCACCAGTGTGACTACTGCCAAGCGAACATGCAAGGTACTGCTGGGTAGC TGATGCTTGTGTACAGCAATGCTACCACATCAAACTTGTCCCAGCAAAGT TGTTATGCTCATCACACGTCAGATGGGAACAGCTTGACTATGTACATTGC ATACAAAGCGGAGCAAGGACATGGTTAGGGTGGGGATGTACAATAGGCAT TTTCACTTTCAGCAGTCAAGTTCTTCAATTGCCTTCGAAGTGTTCATAGT CTACATGTCGTTGTGGAATGACTACGTGAATAGCACGATCCTGAGGTCGC CAGTCTGAGTTATCATAGAGCTCATCACCAGCATGCCCACTCTATAGTTG AAGTTCTGAGGTATAGGTTGTCCCCCGTCATGTCCTGGGCAGGGCCATGC GCTGCTAGTGCTACGCCCTCTGTGAGCTACTGGTACGCTGAAAGGCCTGC GTACAACAAGTGTACTACGCCTGCGCACAACAAAGTTTGGTATGCATTGT GCTGCTGACATTACATGTTTTGATTGTCACTTGCACCTGGCGCGGCTGAA GGTGCTGGGACAGCACTCTCACCAGCAGAGTCGCACGACCTTGTCATGCG AGGTGCTTCCCCCTCATTCAGCACCTTTGAGCCAATGGTGATTTCCCTTG CGTCACATGCCAGCTAGGCATATGCATCCCACTAACGCAGCATCGCTGTA CTCAGGCCTGACGACACATGACACACGCATGTGCTGTCCCTGCGGTTCAG GTGGAGTGGGAAGCGGAGTGGAACTGCGGCACGTGCAAGGGCGTCATGCA GTACCCCGACGTGAGCGACGACTGCGAGGGCAAGTACGAGTTTGCAGTTG AAGTTGACGCCGCCAGCCCCCCCAACGCGCGCCCCTACGTCGACATCTTC ATCAAGGGCGAGAGGGCGGGGCTGCGCGCTGCCATCAACGAGGCTTTTGC GGCCTTTGTGGACGAATTCAACACCAGAGATCAGTAG
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Coding sequence (CDS) from alignment at Contig_59:291525..292911+

>mRNA_11114 ID=mRNA_11114|Name=jgi.p|Trimin1|168629|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_59:291525..292911+ (Tribonema minus UTEX_B_3156 )
TGGTGTAAGCAGCGCCTGACGGACCTGCTGAGCAATGTTGAAGTTGAGAC
TCCCCCTGGCCGCATACACGTGACGCGTGTGGTTGGCATTGATGGGGACG
CCTCAGTGATGATATCGCGGGGGAAACGCCGGTGCCTGTTTGAGTACAAT
GTCACGGTGGAGTGGGAAGCGGAGTGGAACTGCGGCACGTGCAAGGGCGT
CATGCAGTACCCCGACGTGAGCGACGACTGCGAGGGCAAGTACGAGTTTG
CAGTTGAAGTTGACGCCGCCAGCCCCCCCAACGCGCGCCCCTACGTCGAC
ATCTTCATCAAGGGCGAGAGGGCGGGGCTGCGCGCTGCCATCAACGAGGC
TTTTGCGGCCTTTGTGGACGAATTCAACACCAGAGATCAGTAG
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