mRNA_11156 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A836CC47_9STRA (Chaperonin 10-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC47_9STRA) HSP 1 Score: 415 bits (1066), Expect = 1.220e-146 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1
Query: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW
Sbjct: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 207
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: D7G2W2_ECTSI (GroES chaperonin, plastidal n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W2_ECTSI) HSP 1 Score: 206 bits (523), Expect = 6.850e-63 Identity = 95/209 (45.45%), Postives = 151/209 (72.25%), Query Frame = 1
Query: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRI--VRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
++R PL P+ DT++VK+ + K T+GG+FLP M V+ T GTV A G GKRHW+TG P+ V+ G++V++G FDG++V+Y G++HLL+R + L+ YEG+ + TA+M+GDR+L+++ V + + A+GV++A A R + T+G+VVK+GPGR+ P+G +P+ C VGD +K++DFAAE + +E L+ D + V I+N D++AKW
Sbjct: 81 ELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAVGEGKRHWDTGVKIPITVEVGERVVYGNFDGTSVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 289
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC) HSP 1 Score: 171 bits (434), Expect = 4.600e-50 Identity = 85/207 (41.06%), Postives = 140/207 (67.63%), Query Frame = 1
Query: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
+I L P + ++VK+A +++T+GG+ L K++ T GTV++AGPGK H E+G L+PM V+ G V++G++DG+ V+Y+G H L+R DD L+ ++GD + TA ++ D +LV++ + E T ASG+++AA A + K + G VVK+GPGR+A NG+ + + VGD +K+RDFA V +E G++F V++ TD++AK+
Sbjct: 42 EIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEET-ASGLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIE-----GDEFSVVRMTDILAKF 242
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA) HSP 1 Score: 171 bits (433), Expect = 8.940e-50 Identity = 86/207 (41.55%), Postives = 138/207 (66.67%), Query Frame = 1
Query: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
+I PL+P+ + ++VK+ + ++ + GG+ LP K +PT G VVAAGPG++H ET L PM V+PG KVL+G+FDG +V Y+GA H+L+R DD LLT+ G + + + V DRILV++ + E K++G ++ A + + + T GEV+K+GPGRIA G+ ++ GD +KF+DFA +K+ E+++V+ + DV+A+W
Sbjct: 54 EIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQE--KSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGT-----EIKIQDENYLVMYSVDVLARW 253
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.970e-48 Identity = 86/207 (41.55%), Postives = 134/207 (64.73%), Query Frame = 1
Query: 4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAP-SAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
I PL+P+ + I+VK+ + + T GG+FLP K +P+ G VVAAG GK H +TG + P V G +VL+G+FDG++VKY G DH L++ DD LL++ GDA + + V D +LV++ + E T ASG+ +AA + + + T G VVK G GR+A +G +P+ VG+ +KF+D+A +++DGED++V++ D +AKW
Sbjct: 38 IGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEET-ASGIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGA-----DIRLDGEDYIVVRVPDCLAKW 238
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA) HSP 1 Score: 167 bits (423), Expect = 3.700e-48 Identity = 83/206 (40.29%), Postives = 131/206 (63.59%), Query Frame = 1
Query: 4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
IR PL+P+ + I+VK+ + T GG+ LP +P+ G VVA GPG+ H T +L PM V PGQ+V++ ++ G VKY+G DH L+ DD LL YEG+ P+AA +M+ D++LV+I R RT +G+V++A A ++ ++ G+VV +GPGR A NG+ P G+ +KFR++A + +E+ E + V++ D ++KW
Sbjct: 61 IRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTD-TGIVISAQTAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLES-----ESYAVVRMVDCLSKW 260
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS) HSP 1 Score: 164 bits (416), Expect = 2.240e-47 Identity = 82/207 (39.61%), Postives = 138/207 (66.67%), Query Frame = 1
Query: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
+I L P + ++VK+AE +E+T GG+ L K++ T GTV++ GPGK H E+G L+PM V PG V++G++DG+ + Y+G H L+R DD L+ ++G + +V D +LV++ + E T + G+++AA + + K + GEVVK+GPGR+A NG+ + + +VGD++KFRDFA V +++GE++ V++ TD++AK+
Sbjct: 41 EIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDGKL-TLDNVDVVSDNVLVKVNDDQEAT-SGGLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEV-----QIEGEEYAVVRMTDILAKF 240
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A7S2XVL1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XVL1_9STRA) HSP 1 Score: 163 bits (413), Expect = 7.300e-47 Identity = 79/207 (38.16%), Postives = 132/207 (63.77%), Query Frame = 1
Query: 1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
+I LKP + ++VKLA +E T GG+FL K++ T GTV++ GPGK H E+G + M V PG V++G++DG+ ++YN H L+R DD ++ + G+ + + ++ G+ +L+ + + ASG+++AA R K + GE+VK+GPG++A NGK + + VG +KFRDFA +K+DG++F V++ TD++AK+
Sbjct: 45 KIEGELKPTNNFVLVKLAPIEESTSGGIFLTGSAKIEKTEGTVISVGPGKTHTESGVTFDMPVIPGDGVVYGKYDGTELEYNDERHTLIRDDDIMVKFTGEL-TLDSVEVTGENVLIAVKSSDDEESASGLLIAAQTKRGSKPSTGEIVKVGPGKMASNGKLMDMDVEVGAMVKFRDFAGN-----EIKIDGKEFAVVRYTDLLAKF 245
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A7S2KVZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVZ8_9STRA) HSP 1 Score: 155 bits (392), Expect = 7.080e-44 Identity = 77/185 (41.62%), Postives = 119/185 (64.32%), Query Frame = 1
Query: 4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAME 558
I L P + I+VK+AE +++T+GG+ L K + T G VV+ GPG+ H E+G +PM V PG+ VL+G++DG+ + Y+G H L+R D ++ Y GD + + D +LV++ R E ASG+++A+ A+ K + G VVK+GPGR+A NG+ + + AVGD+IKFRDFA V++E
Sbjct: 46 IEGALVPCTNFILVKIAEAEDQTEGGIILSGRAKQKKTEGVVVSIGPGRTHQESGITFPMPVSPGEGVLYGKYDGTELDYDGCKHTLVRDTDIMVKYSGDKMTLENCDVTSDSVLVKVNRSGEEEMASGLLIASSASGNSKPSTGTVVKVGPGRMAQNGEMMDMDVAVGDEIKFRDFAGNEVSIE 230
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.630e-43 Identity = 75/206 (36.41%), Postives = 132/206 (64.08%), Query Frame = 1
Query: 4 IRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVRELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 621
I + L+P+ + ++VKL + +T GG+ +P K +P G VA GPG+ H ETG+L P+ V+ G++V++G + G+ +KYN DH+L+R D+ LL Y GD T + VGD++LV + +E E+ ASG+V++ A++ + G +++ GPGR++ G+ +P+ D+IKFR++ E V ++G +++V++ D++AKW
Sbjct: 38 ITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKE-EKQTASGIVLSPEASKS-RVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEV-----NIEGTEYMVVRANDILAKW 236 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168611 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11156 ID=mRNA_11156|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_59:699639..702843- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGATTCGCGCGCCGCTTAAGCCCATTGGAGACACAATCATAGTAAAGCTback to top protein sequence of jgi.p|Trimin1|168611 >Trimin1|168611|e_gw1.59.97.1 ID=Trimin1|168611|e_gw1.59.97.1|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKback to top mRNA from alignment at Contig_59:699639..702843- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11156 ID=mRNA_11156|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3205bp|location=Sequence derived from alignment at Contig_59:699639..702843- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_59:699639..702843- >mRNA_11156 ID=mRNA_11156|Name=jgi.p|Trimin1|168611|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_59:699639..702843- (Tribonema minus UTEX_B_3156 )back to top |