mRNA_9441 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350219
Unique NamemRNA_9441
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A835YUQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.670e-61
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR 273
            MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR
Sbjct:    1 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR 86
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.300e-31
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            MGGGR FH+PK+VWSPAGGWW  P  W+RNT  AF  I L  +A+  +S   ERRP+AP  HIPSQ WC HA+EDDPSL
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSL 79
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221)

HSP 1 Score: 112 bits (279), Expect = 1.330e-29
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            MGG +KF YPKYVWSPAGGWW  P  W+RNTA+AFG I  + + V  +S  LERR V P++HIPSQ +C HA+EDDPSL
Sbjct:    1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSL 79
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT)

HSP 1 Score: 110 bits (274), Expect = 5.750e-29
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLA 255
            MGGG++F YPKYVWSP+GGWW +P  W+RNTA+ FG I    + +  LS QLERRPVAP++HI SQ +  HA+EDDPSL 
Sbjct:    1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSLT 80
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A196SL48_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL48_BLAHN)

HSP 1 Score: 108 bits (270), Expect = 2.330e-28
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            M GG  F YPKYVWSPAGGWW Q   W+RNT +A   +  L++ VF  S  +ERRP+ P +HIPSQ WC HA+EDDP L
Sbjct:    1 MSGGTPFRYPKYVWSPAGGWWGQNANWRRNTRIAAVVMVALSIPVFIASANMERRPIPPVRHIPSQYWCKHAKEDDPRL 79
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE)

HSP 1 Score: 106 bits (265), Expect = 1.410e-27
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   19 GGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAK 258
            GG ++F YPKYVWSP+GGWW  P  W+RNT +    + L  + V  +S +LERRPVAP++HIPSQ WC +AE DDPSL K
Sbjct:    1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSLQK 80
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: UPI0013901F45 (uncharacterized protein LOC116613693 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901F45)

HSP 1 Score: 106 bits (264), Expect = 5.160e-27
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGW 264
            MGGG+KF YPK+VWSP+GGWW  P  W+RNT +AFG  A + + V  ++ QLERRPV P++HIPSQ    +A+ DDPSL   +
Sbjct:   26 MGGGKKFAYPKFVWSPSGGWWCNPKNWRRNTLIAFGVYAAICIPVAYIALQLERRPVPPYRHIPSQRLAKYAKVDDPSLPDNY 108
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO)

HSP 1 Score: 105 bits (261), Expect = 5.410e-27
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAK 258
            MGGG  ++ PK VWSPAGGWWN P  W+RNT +A   + +L + +F +S   ERRP+ P  HIPSQ WC HA EDDP LAK
Sbjct:    1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRLAK 80
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.480e-25
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSL 252
            MGGGR F++P ++W+P+GGW+  P  W+ NT +  G I +   + F+LS  LERRP+AP  HIPSQ WC HA EDD SL
Sbjct:    1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79
[Close]
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Match: A0A2B4SQG4_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SQG4_STYPI)

HSP 1 Score: 99.8 bits (247), Expect = 9.510e-25
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   16 MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSRQLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGW 264
            MGG +KF YPKYVWSP GGWW  P  W+RNTA+ F  +  L + V  LS   ERR V P++HIPSQ +  +A+EDDPSL   +
Sbjct:    1 MGGVKKFDYPKYVWSPTGGWWCNPRNWKRNTAICFAVVLGLQIPVALLSWSRERRYVPPYRHIPSQRFARYAKEDDPSLPDNY 83
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350219 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUQ9_9STRA3.670e-61100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G068_ECTSI4.300e-3163.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF0F2211.330e-2963.29uncharacterized protein LOC114956067 n=1 Tax=Acrop... [more]
A0A6S7H709_PARCT5.750e-2961.25Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A196SL48_BLAHN2.330e-2858.23Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A1X7UGN9_AMPQE1.410e-2757.50Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI0013901F455.160e-2755.42uncharacterized protein LOC116613693 n=1 Tax=Nemat... [more]
A0A1Z5JPC4_FISSO5.410e-2756.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A4D9DFY8_9STRA3.480e-2553.16Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2B4SQG4_STYPI9.510e-2554.22Uncharacterized protein n=1 Tax=Stylophora pistill... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:796005..797407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350219|estExt_Genemark1.C_Ctg_580094
Max annot lvl33208|Metazoa
EggNOG OGs2CGJ1@1|root,2S6YK@2759|Eukaryota,3A92W@33154|Opisthokonta,3C3J4@33208|Metazoa
Evalue3.84e-30
Seed ortholog400682.PAC_15716111
Hectar predicted targeting categoryother localisation
TranscriptId350541
TrackFilteredModels1
ProteinId350219
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350219gene_9441Tribonema minus UTEX_B_3156 geneContig_58 796005..797407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350219Trimin1|350219|estExt_Genemark1.C_Ctg_580094Tribonema minus UTEX_B_3156 polypeptideContig_58 796020..797259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9441_1exon_9441_1Tribonema minus UTEX_B_3156 exonContig_58 796005..796094 +
exon_9441_2exon_9441_2Tribonema minus UTEX_B_3156 exonContig_58 796268..796351 +
exon_9441_3exon_9441_3Tribonema minus UTEX_B_3156 exonContig_58 797158..797407 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9441UTR5_9441Tribonema minus UTEX_B_3156 five_prime_UTRContig_58 796005..796019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9441CDS_9441Tribonema minus UTEX_B_3156 CDSContig_58 796020..796094 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9441UTR3_9441Tribonema minus UTEX_B_3156 three_prime_UTRContig_58 797260..797407 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9441 ID=mRNA_9441|Name=jgi.p|Trimin1|350219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=424bp|location=Sequence derived from alignment at Contig_58:796005..797407+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGAAAACAAACACCATGGGTGGCGGCAGGAAATTCCACTACCCTAAGTA
TGTCTGGTCCCCGGCGGGCGGCTGGTGGAATCAGCCCACGGCCTGGCAAC
GGAACACGGCGGTGGCGTTTGGGGCTATAGCGTTGCTCAATCTGGCGGTA
TTCAACCTGTCTCGGCAGCTGGAGCGGCGACCGGTTGCTCCCCACAAGCA
CATACCGAGCCAGCTGTGGTGCACGCACGCGGAGGAAGACGACCCGTCGC
TGGCCAAGGGCTGGGGATCACGCTAGAAAATGCTAGAACACGAGCAGCGA
TAGCTGGGGAACGAAAGGAAGCACTCGAGGTAGCAGGTGTAGGGGTCATG
GGCAGGTGTGTATGGTGCTCTGTCGAAAGGACAGGTGCAGGTGCGGAATG
TAAATGGTCACATATTTTACCATG
back to top

protein sequence of jgi.p|Trimin1|350219

>Trimin1|350219|estExt_Genemark1.C_Ctg_580094 ID=Trimin1|350219|estExt_Genemark1.C_Ctg_580094|Name=jgi.p|Trimin1|350219|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
MGGGRKFHYPKYVWSPAGGWWNQPTAWQRNTAVAFGAIALLNLAVFNLSR
QLERRPVAPHKHIPSQLWCTHAEEDDPSLAKGWGSR*
back to top

mRNA from alignment at Contig_58:796005..797407+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9441 ID=mRNA_9441|Name=jgi.p|Trimin1|350219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1403bp|location=Sequence derived from alignment at Contig_58:796005..797407+ (Tribonema minus UTEX_B_3156 )
GAGAAAACAAACACCATGGGTGGCGGCAGGAAATTCCACTACCCTAAGTA
TGTCTGGTCCCCGGCGGGCGGCTGGTGGAATCAGCCCACGGTGAGCCTGC
GATTCCCGAATCAGACCTATCAGTTCAGACGCAAATAGCAAAGCTTGACA
GCTGCTGCATTGATTTGCGCAGCATGTATTGCTCAATTCGACTACTTGCA
GCAGGCAATCGCACTATCATACCCAGATCGCACAGACTCAAGTTCGACTT
CGCGTGCTGGCAGGCCTGGCAACGGAACACGGCGGTGGCGTTTGGGGCTA
TAGCGTTGCTCAATCTGGCGGTATTCAACCTGTCTCGGCAGCTGGAGGTG
AGTTTCAGTGATGCAGATTTCTTGAGGAGCAAGTTGATATCCAATCACGC
AGAGGTGCAGAACCTACACTGCAGCGACTGTTTCTGGATGTGAGCGCCGC
TAGGCTTTCAAGGCAGCTGATAAGCTAGAAGCTCATCACTTCAGCAGCAG
CTCTAAAATTGCTGTGCTGACAGGACCTAGCTTTCCAATATATCCATCTC
TCATCCCGCTACGCCTGAATGGGTTTGCAGCTGGTGATTGGCAGAAGCAT
GAGTTGAATTCCAAGTGCTGTAGCCACTGAATTGCATTCATGCTCAAAGC
TATCGGCCGTGTAGATTCAACGCGCTGACAACGTGCCTTCACATAATGAC
AGTAGCCTGCCTCCATGCAATGCGGTGCCCTCCAACTGCCGATGCTCATG
TCCTCCTCAGCATCGTTGTGGAACCCACAATACGGATGATTTCCACTGAG
CCTTTGCAAGTGGTGCCGCCGTATGCACGGCACGCAGTGTTAACTCAACA
CAGCGCCATGTCAACATGTATGTGGACCTGGCGCTGACACTGACACTCCA
CAACGTCGTGGATGCGTGTACCACACATTGCATACATGCTTCTTGAAGTA
CATGCGTTGGTGTCGTTCGCTTGTCATGCCAGCTGCGTTTGCCATGCCAG
TGCAACAGTGGAACACTGCAATGAAACTTCAGTGCTGCATTTAAAAAGTA
CGACTCTTGCATTGCGCCCCATCATTCATGTGATTATTCATGATTTTGAA
TCATCGTTTTCATGTGATGTCGCGTGTCGCCCCTCGCGCGTTCCGCTCCG
CAGCGGCGACCGGTTGCTCCCCACAAGCACATACCGAGCCAGCTGTGGTG
CACGCACGCGGAGGAAGACGACCCGTCGCTGGCCAAGGGCTGGGGATCAC
GCTAGAAAATGCTAGAACACGAGCAGCGATAGCTGGGGAACGAAAGGAAG
CACTCGAGGTAGCAGGTGTAGGGGTCATGGGCAGGTGTGTATGGTGCTCT
GTCGAAAGGACAGGTGCAGGTGCGGAATGTAAATGGTCACATATTTTACC
ATG
back to top

Coding sequence (CDS) from alignment at Contig_58:796005..797407+

>mRNA_9441 ID=mRNA_9441|Name=jgi.p|Trimin1|350219|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_58:796005..797407+ (Tribonema minus UTEX_B_3156 )
ATGGGTGGCGGCAGGAAATTCCACTACCCTAAGTATGTCTGGTCCCCGGC
GGGCGGCTGGTGGAATCAGCCCACGGCCTGGCAACGGAACACGGCGGTGG
CGTTTGGGGCTATAGCGTTGCTCAATCTGGCGGTATTCAACCTGTCTCGG
CAGCTGGAGCGGCGACCGGTTGCTCCCCACAAGCACATACCGAGCCAGCT
GTGGTGCACGCACGCGGAGGAAGACGACCCGTCGCTGGCCAAGGGCTGGG
GATCACGCTAG
back to top