mRNA_9434 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350215
Unique Name	mRNA_9434
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350215 vs. uniprot
Match: A0A836CAZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ7_9STRA)

HSP 1 Score: 453 bits (1166), Expect = 8.140e-158
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 3

Query:   39 MPGSGRRRGSMFVLQALLSFGGMIAVLWLYTTANDGLGDTGAYLSAGALLTTILLVSRNRPRDVAFSGALLALALVKQQILPAAPVSFYAAWCMLESLRRERVDDALAEMSEEEKNIRALLLHHGKSNELHLVDTWLAEYAGRETELYASLSSRYRAERHMPGSPPEAAADAITQPGSPEQGQQRSPPVTAAARRRFSGARARSDAVETARVQALLEQEKNIIARIDKLRERTQRHGLAARG 764
            MPGSGRRRGSMFVLQALLSFGGMIAVLWLYTTANDGLGDTGAYLSAGALLTTILLVSRNRPRDVAFSGALLALALVKQQILPAAPVSFYAAWCMLESLRRERVDDALAEMSEEEKNIRALLLHHGKSNELHLVDTWLAEYAGRETELYASLSSRYRAERHMPGSPPEAAADAITQPGSPEQGQQRSPPVTAAARRRFSGARARSDAVETARVQALLEQEKNIIARIDKLRERTQRHGLAARG
Sbjct:    1 MPGSGRRRGSMFVLQALLSFGGMIAVLWLYTTANDGLGDTGAYLSAGALLTTILLVSRNRPRDVAFSGALLALALVKQQILPAAPVSFYAAWCMLESLRRERVDDALAEMSEEEKNIRALLLHHGKSNELHLVDTWLAEYAGRETELYASLSSRYRAERHMPGSPPEAAADAITQPGSPEQGQQRSPPVTAAARRRFSGARARSDAVETARVQALLEQEKNIIARIDKLRERTQRHGLAARG 242

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350215 vs. uniprot

BLAST of jgi.p|Trimin1|350215 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CAZ7_9STRA	8.140e-158	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_58	contig	Contig_58:755219..760043 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350215\|estExt_Genemark1.C_Ctg_580088
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-10_004450.1
TranscriptId	350537
Track	FilteredModels1
ProteinId	350215

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350215	gene_9434	Tribonema minus UTEX_B_3156	gene	Contig_58 755219..760043 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350215	Trimin1\|350215\|estExt_Genemark1.C_Ctg_580088	Tribonema minus UTEX_B_3156	polypeptide	Contig_58 755704..760005 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9434_5	exon_9434_5	Tribonema minus UTEX_B_3156	exon	Contig_58 755219..755892 -
exon_9434_4	exon_9434_4	Tribonema minus UTEX_B_3156	exon	Contig_58 756813..756972 -
exon_9434_3	exon_9434_3	Tribonema minus UTEX_B_3156	exon	Contig_58 757819..757902 -
exon_9434_2	exon_9434_2	Tribonema minus UTEX_B_3156	exon	Contig_58 758979..759182 -
exon_9434_1	exon_9434_1	Tribonema minus UTEX_B_3156	exon	Contig_58 759914..760043 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9434	UTR3_9434	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_58 755219..755703 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9434	CDS_9434	Tribonema minus UTEX_B_3156	CDS	Contig_58 759914..760005 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_9434	UTR5_9434	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_58 760006..760043 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_58:755219..760043-
coding sequence from alignment at Contig_58:755219..760043-

spliced messenger RNA

>mRNA_9434 ID=mRNA_9434|Name=jgi.p|Trimin1|350215|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1252bp|location=Sequence derived from alignment at Contig_58:755219..760043- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGAGGACTGTGTAGTGACAGCTCACAGAGAGTGGATGCCTGGAAGC
GGGAGACGACGCGGCAGCATGTTCGTGCTCCAGGCCCTGCTGTCTTTCGG
TGGAATGATAGCAGTGCTTTGGCTGTACACCACCGCGAACGACGGACTTG
GCGACACCGGCGCATACCTGAGCGCTGGCGCGCTGCTTACGACCATACTG
CTGGTATCGCGGAACAGGCCGCGCGACGTCGCGTTCAGCGGCGCGCTGCT
TGCGCTGGCGCTGGTCAAGCAGCAGATTCTCCCCGCCGCGCCCGTGTCGT
TCTACGCGGCGTGGTGCATGCTGGAGAGCCTCAGGCGCGAAAGAGTGGAC
GACGCGCTGGCGGAGATGAGCGAGGAGGAGAAGAACATCAGAGCGCTGCT
GCTTCACCACGGCAAAAGCAACGAGCTGCACCTGGTGGACACGTGGCTCG
CGGAGTACGCCGGCCGGGAAACGGAACTGTACGCTAGCCTGAGTTCACGA
TACAGAGCGGAGCGTCACATGCCCGGAAGTCCGCCCGAGGCTGCGGCCGA
CGCAATCACGCAGCCAGGCTCTCCAGAGCAGGGGCAGCAGCGCTCGCCGC
CCGTAACCGCCGCGGCGCGGCGCCGCTTCAGCGGCGCGCGCGCGCGGAGC
GACGCCGTCGAGACGGCGCGCGTGCAGGCGCTGCTCGAGCAGGAGAAGAA
CATCATTGCGCGCATCGACAAGCTGCGCGAGCGCACGCAGCGGCACGGCC
TCGCTGCACGCGGCTGATGCGGCGCGGCGCTGACGCGCTAATGGCGCGGG
GTGCAGCGGCATTATGCGTATGGCGGCAGCAGCAGCAGCAGCACGCACGG
GCGGCAGCGCGCATTGCGCGGCGGCGGTGGCGGCAGCAGGGCTGCCGGCT
GATGTGCAGCGTGTTGTCGCCTTTGTGTGCTGCTGCTGCATGAAGTGCAG
GCTTGAGTTAGGATTGTACACAGGGGGTCGGGCGTATACAGGAAGCTTAC
AAGATGCGGCATCAGCCATGCTGGCGGGACCATGTACACACGCTCTGTCT
GTAGGCGATACGAGGGGAGGGGGGGAGAGTGTCAGACGTGCGGTGACTGG
CACTGGGTGTGAGTACGCGTTCTTGACAATCAATGTGGTTCGCGCGAAGT
GCAGGAGTCAACGGCCGCTCGCATACGACGAGCAGTACCGACATGTGTCA
AGCCCTGTACATACGCGCGTGGTGGTTCAAAATGCATACGTGCGTACTGA
TG

protein sequence of jgi.p|Trimin1|350215

>Trimin1|350215|estExt_Genemark1.C_Ctg_580088 ID=Trimin1|350215|estExt_Genemark1.C_Ctg_580088|Name=jgi.p|Trimin1|350215|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MPGSGRRRGSMFVLQALLSFGGMIAVLWLYTTANDGLGDTGAYLSAGALL
TTILLVSRNRPRDVAFSGALLALALVKQQILPAAPVSFYAAWCMLESLRR
ERVDDALAEMSEEEKNIRALLLHHGKSNELHLVDTWLAEYAGRETELYAS
LSSRYRAERHMPGSPPEAAADAITQPGSPEQGQQRSPPVTAAARRRFSGA
RARSDAVETARVQALLEQEKNIIARIDKLRERTQRHGLAARG*

mRNA from alignment at Contig_58:755219..760043-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9434 ID=mRNA_9434|Name=jgi.p|Trimin1|350215|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4825bp|location=Sequence derived from alignment at Contig_58:755219..760043- (Tribonema minus UTEX_B_3156 )
CAGCAGAGGACTGTGTAGTGACAGCTCACAGAGAGTGGATGCCTGGAAGC
GGGAGACGACGCGGCAGCATGTTCGTGCTCCAGGCCCTGCTGTCTTTCGG
TGGAATGATAGCAGTGCTTTGGCTGTACACGTGAGTGCTAAAACTGGGAT
GCGATGTGGTCGCCTAGTAGCGAGCGGCCGAAGCACCGGCATGCAAGGGA
ATTTCAATCAAGCTTGTCTACGACGGACTCCGTGTTCCTTCACCATGCTG
CACTGGTTCATGTCATAAAACTTCAATCGTTCGACCAGCAAGGTTCCCTT
GATTTGTTGCCCTTGCCCATGCCAGCGTTTTTGACTTTCAATTTAACTCC
AATTCAATTGGACTGCAATTCAAACTAGCATCGCAAGCATAGATTCAACA
GCCCAGGATAGGGTAGCGCTGCATGTCTTACTCCCTGCCATTCTTAGTGC
AGCATCCTGCGATGACCCACAGACTGACCACGGCGGCAAGCCCATCACTT
GTGAACAGCAGTGCGCCATGCATTTTGCGGGACTCTCATTCGCCTTCAAT
GCCTGAGCACGGTGGAGCGCACTTAGGACAAGCGCCACAGTGATTACATG
GCATTTCATCATGGCCGGCACCATCACAACACTCGTTCTCTATTCAGCGC
ACAGGTGCCTGGGCAACGGTAGCTGAAAAATCAAGAGCACCAAACACTCA
ATGGCTTTCACGTCCCGTGTGCCTCCATCCATCCTTCCATGCTTTCCATT
GTCAAAACAGTTATCCACGCTGCGAAGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGTTCCCCCATGACGCACCACCTGCCCTCCCTATCTCCCCACGCCA
CGCGCGCGCAGCACCGCGAACGACGGACTTGGCGACACCGGCGCATACCT
GAGCGCTGGCGCGCTGCTTACGACCATACTGCTGGTATCGCGGAACAGGC
CGCGCGACGTCGCGTTCAGCGGCGCGCTGCTTGCGCTGGCGCTGGTCAAG
CAGCAGATTCTCCCCGCCGCGCCCGTGTCGTTCTACGCGGCGTGGTGCAT
GCTGGAGAGCCTCAGGTGATTGCGCTAAGTGGGTGGGGGGGGGGGGGGGG
GGGCGGGGGAGCGTAGGTATGCTTGGTTGCTGTGAGAGGCTCTAGTGATG
CGTGCGGAGCACTGGGGCGGGGCTGGGTGTGCTGTGGGTAAGTAGGTATG
CCTAGTTGCTGGGGAGCCTCAGGCAATGCCTGAATTATGCCATCGTTCTT
CGCGGCATGGTGCATGCTGGAGAGCCTCAGGTGATTGCGCGAAGTGGGGA
GGCGGGGAGGGGGGGGGGGGGGGGGAAGGGGGCGCTATGGGTATGTTGGT
TGAAACACTGAATCCCGCTGTCGTTCTCTGCGGCGTGGTGCATGCTGGAG
AGCCTCAGCTGATGTACGCACACGCACGGGGGGGGGCTGGTGCGCTGTGG
GTTTGTAGGTATGCTTGGTTGCTGGGGAGCGTCAGGTGATGCGCATGGGG
GCTGGCACGCATGTAGGTATGCCTAGTCGCTGCGGAGCCTCAGGTGATGC
GGGCGCGGAGCACTGATGCAAGCTGATGCGCTGTGGGCATGTAGGTATGC
CTAGGCGCTGTGCGAGGCTCTACTTGTGCACACGCCGAAAACTGCAGCGG
ACTAGTGCGCCGTGCGCATTCGCCTCTGCCGAGCTTGTTGAAGAGCGTCA
GGAGATGCTGCGCACGCTGCCTGCGCCGCACCTGGGACACGGAGAGTTTC
TTCGTGCGATCTGCTGCAGTGATTGCAGCATTGAAACATGCACTCCCTGA
CTCATCCCGCACCTCACCGCGCTCGTTCAACAGCGCGACTTCTCGCCAGC
AACTACGGCATGTCACGGTGCCCTTCACCATGCATGGCCATGCCTGAGGT
TGCTGCTGTTGCCTCAATTAGAACGTAACCCTAACCCTATCTCTCACTTG
ATCAAGATAGCATCACTCATGGCACGGAGCTCTGCGCATCGAGTCGTGGC
CGCCGCCTGCGAGGTGACTGCTTTCAGATGCTGCCACACCGGCACTGCAT
CAAATTCATACATACATACCCCCAATTGTGTGCACGCCGCTCCCATTTTG
ATGCACCCCCGATGGCTGCTGCTCCGCGCTTGTCGCCACAGGCGCGAAAG
AGTGGACGACGCGCTGGCGGAGATGAGCGAGGAGGAGAAGAACATCAGAG
CGCTGCTGCTTCACCACGGCAAAAGGTACGCTCACGCACTGGCACTTGCC
CTACCTTTAGGGTTATGACGGGGGCACTCTGGCTGGCGTTGCCTGAACGC
TGAACCTGGGCCAAATATGCCATCATAGTCAGACTGCTGTCAGGGTCGTT
GGCGCTGATATGTATCATTCGTGCACTTCTATGGTTAGCAGCAATGCGAT
CTCCATGGGCTACTGCTGTTTTGTTGTGATGCTGTTTTGTTGTGATGCTG
AGCAGGCACTGGTATTCAAGTTAGGTGAGACTTCCATGATGAGCACACGA
CACGTTTAGAACTTCACTTTGAAGTTGAAGTTGTCCGCCCCCGACAAGTG
AGATGCGCTGCTCAGGTGGACAGGGCATTGATCCAGCTGCCTGCTGCCTC
ATGCATACAAGTTTACAAGCCTTGCCATCATCAGCAGTGCAGCCAGTGTT
GCAGCGATCAGCTTGTCGTCGTTACGCACGGCCGCGGCCGCAGCCGGTGT
TGCTTGCCATACAGTGTCACGAGCGATGCAGGCAGATGCTACCGAAGTGG
CGCACACACATTGCGTGCATTGCCTGCTGTAACAGCAGTGCTCAGTAACG
CTGACCCTAACCCTCTGCACCCATACAGGTTACTGCCTTCTTGTACTGCA
GCGACTTGCCACGCTTTCTTGGGATGACGGCGGCGTCTGCTTCTCATGCC
GTGTTCTCTCTGATAGAGTACTTGACATGCCATGCGTCGTGCGGCAGTCG
AAGCACAGAGCATCACACCGCCATGCGCTGACATGCGGCATGGACAGCTC
ATACATGCCCCCATCAGGAATGCACTCAAATGCACACTTCAACTATGACG
CGTCAACTTCACGTTGCGCAGCAACGAGCTGCACCTGGTGGACACGTGGC
TCGCGGAGTACGCCGGCCGGGAAACGGAACTGTACGCTAGCCTGAGTTCA
CGATACAGAGCGGAGCGTCACATGCCCGGAAGTCCGCCCGAGGCTGCGGC
CGACGCAATCACGCAGCCAGGCTCTCCAGAGGTAAGTAGTGCTCCCCATG
CACAGAAAGTTGAAGTTCATGGCTTCATCGTGTAGCTGCCCTGCGGCTTT
GAGGTGATGCAGTCGGAGTGATGTTGAGGTGTGTGTGCTGTCTGTCCCAC
ATTGCCTGCATCTGTATTTTTTGCCATGAATCACCTCCCCCCCACACACA
CCACCACCACCCCCCTCTGCGCGGAACCCCCTGCGGATTGGAGCACGTTT
GGAAGGAAACAGTCTGTGAGACTAGCCCACCTGATCGCATCTGATTACTG
TTTAGTCAGTGCGTATCTGCACTGGCACAGGGTCGCTGTGCTCAGCCCAG
TGGGAGCCGCAGCAAATCACAAGATCAGAAAAATCGGTGTGTGCCATGAG
TGCATCACCTCTCCCCTCTCACAGTGTCCTGAAGTGCATGCGCCCAGCTG
CCTTTCGGGTGCTCCAGGCATGCTCTTGTGACGGGTATGCACGGTACATC
GCGTGCTGCCTACGGATGTATGATACGGTATCGCGCACGCTGCCTCTCGC
CTCAGGACTCGTCAGCTATGCAACAGTCAAGTGAAACAGTGGCACCATTT
GTTGTATGTTTGTGCTACCATTCAGCGCGACCGTCAGAGCGATGGTTCAG
CCGCATGATGCTTGTCTCTCCACGCCTCGCAGCAGCAGCAGCAGCAGTGC
TCACCACATGCAGATGCCCAACTCGCGTTGTGGTTGCACGGACACGTATG
CACCTTCTCGCGCGTTGCTCAGCCCTGTTGCTGCCGTTGCGCTGCGCGGC
GCAGTCCGTCTGCACCATGACGTCTGCGCGCTTGCCGACACCTCTTGCAA
CGTCACGTCATGCCGACACACCTTCTGACACCTTCCGCGACGTCATGTCA
TGTCCACACACCTTCTGATACTATCTGCGACGCCACGTCTCCGCGGCTCA
GCAGGGGCAGCAGCGCTCGCCGCCCGTAACCGCCGCGGCGCGGCGCCGCT
TCAGCGGCGCGCGCGCGCGGAGCGACGCCGTCGAGACGGCGCGCGTGCAG
GCGCTGCTCGAGCAGGAGAAGAACATCATTGCGCGCATCGACAAGCTGCG
CGAGCGCACGCAGCGGCACGGCCTCGCTGCACGCGGCTGATGCGGCGCGG
CGCTGACGCGCTAATGGCGCGGGGTGCAGCGGCATTATGCGTATGGCGGC
AGCAGCAGCAGCAGCACGCACGGGCGGCAGCGCGCATTGCGCGGCGGCGG
TGGCGGCAGCAGGGCTGCCGGCTGATGTGCAGCGTGTTGTCGCCTTTGTG
TGCTGCTGCTGCATGAAGTGCAGGCTTGAGTTAGGATTGTACACAGGGGG
TCGGGCGTATACAGGAAGCTTACAAGATGCGGCATCAGCCATGCTGGCGG
GACCATGTACACACGCTCTGTCTGTAGGCGATACGAGGGGAGGGGGGGAG
AGTGTCAGACGTGCGGTGACTGGCACTGGGTGTGAGTACGCGTTCTTGAC
AATCAATGTGGTTCGCGCGAAGTGCAGGAGTCAACGGCCGCTCGCATACG
ACGAGCAGTACCGACATGTGTCAAGCCCTGTACATACGCGCGTGGTGGTT
CAAAATGCATACGTGCGTACTGATG

Coding sequence (CDS) from alignment at Contig_58:755219..760043-

>mRNA_9434 ID=mRNA_9434|Name=jgi.p|Trimin1|350215|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_58:755219..760043- (Tribonema minus UTEX_B_3156 )
ATGCCTGGAAGCGGGAGACGACGCGGCAGCATGTTCGTGCTCCAGGCCCT
GCTGTCTTTCGGTGGAATGATAGCAGTGCTTTGGCTGTACACCACCGCGA
ACGACGGACTTGGCGACACCGGCGCATACCTGAGCGCTGGCGCGCTGCTT
ACGACCATACTGCTGGTATCGCGGAACAGGCCGCGCGACGTCGCGTTCAG
CGGCGCGCTGCTTGCGCTGGCGCTGGTCAAGCAGCAGATTCTCCCCGCCG
CGCCCGTGTCGTTCTACGCGGCGTGGTGCATGCTGGAGAGCCTCAGGCGC
GAAAGAGTGGACGACGCGCTGGCGGAGATGAGCGAGGAGGAGAAGAACAT
CAGAGCGCTGCTGCTTCACCACGGCAAAAGCAACGAGCTGCACCTGGTGG
ACACGTGGCTCGCGGAGTACGCCGGCCGGGAAACGGAACTGTACGCTAGC
CTGAGTTCACGATACAGAGCGGAGCGTCACATGCCCGGAAGTCCGCCCGA
GGCTGCGGCCGACGCAATCACGCAGCCAGGCTCTCCAGAGCAGGGGCAGC
AGCGCTCGCCGCCCGTAACCGCCGCGGCGCGGCGCCGCTTCAGCGGCGCG
CGCGCGCGGAGCGACGCCGTCGAGACGGCGCGCGTGCAGGCGCTGCTCGA
GCAGGAGAAGAACATCATTGCGCGCATCGACAAGCTGCGCGAGCGCACGC
AGCGGCACGGCCTCGCTGCACGCGGCTGA