Trimin1|350205|estExt_Genemark1.C_Ctg_580069 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350205
Unique NameTrimin1|350205|estExt_Genemark1.C_Ctg_580069
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length266
Homology
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BLAST of jgi.p|Trimin1|350205 vs. uniprot
Match: A0A835YPG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPG0_9STRA)

HSP 1 Score: 365 bits (937), Expect = 4.340e-125
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0 
Query:    1 MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLPASLESLTLVGAVVEGEFQSGGGAVGLPEGLEXXXXXXXXXXXXXXXXSTLRRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVLPAFPASLEVLKLPGRYSAPIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLHVVAYEGKTSFNKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDCPQYTHSLGRCPVSWSS 265
            MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLPASLESLTLVGAVVEGEFQSGGGAVGLPEGLEXXXXXXXXXXXXXXXXSTLRRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVLPAFPASLEVLKLPGRYSAPIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLHVVAYEGKTSFNKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDCPQYTHSLGRCPVSWSS
Sbjct:    1 MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLPASLESLTLVGAVVEGEFQSGGGAVGLPEGLEXXXXXXXXXXXXXXXXSTLRRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVLPAFPASLEVLKLPGRYSAPIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLHVVAYEGKTSFNKRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDCPQYTHSLGRCPVSWSS 265
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350205 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPG0_9STRA4.340e-125100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 119..258
e-value: 1.1E-9
score: 39.2
NoneNo IPR availablePANTHERPTHR32134:SF148FNIP REPEAT-CONTAINING PROTEINcoord: 48..254
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 48..254
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 11..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_58contigContig_58:580027..580824 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350205mRNA_9420Tribonema minus UTEX_B_3156 mRNAContig_58 579686..580824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350205|estExt_Genemark1.C_Ctg_580069 ID=Trimin1|350205|estExt_Genemark1.C_Ctg_580069|Name=jgi.p|Trimin1|350205|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=266bp
MATVVQLPAALERINFESSEPSCLPILLWPNSLWDLSLRHCTIWAQYHLP
ASLESLTLVGAVVEGEFQSGGGAVGLPEGLETLTLLDCTVEFQLHLPSTL
RRVVTFGDDPMAEPGAPAHNATCNAFVHLHSPPPRLVELDLRGCGDMFVL
PAFPASLEVLKLPGRYSAPIAALPASLQQLWLGGRFNSALGPLPRQLRQL
HVVAYEGKTSFNKRLAALPDSLQELLLGTAFTQRLGKLPAALRRLHIDCP
QYTHSLGRCPVSWSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf